mRNA_S-ischiensis_contig1.1198.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1198.1
Unique NamemRNA_S-ischiensis_contig1.1198.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1198.1 vs. uniprot
Match: D8LTA4_ECTSI (Transmembrane protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTA4_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 2.410e-45
Identity = 104/231 (45.02%), Postives = 138/231 (59.74%), Query Frame = 1 
Query:  361 WPARAALKCLLDDPRKVRWADTVRAARDTAVACQAGPRELVPVHWVEELMARLRRHWGHAKAEGSVLEPALRGGLEGLALVHQESSPASLLPGEGGPLAAALE----DGATIAGMRRRKHAQVLVGDRNRRILLKLLAVSAFLKDRTARNLKPSPDMLARLHAETEEALRPPLRADCQGALKTLCSQWKKVIQKWERDFARANGRPPGLEEKEEVAGDWYAAYRRLHFALD 1041
            WP RA L  L  +PR+  W D +R A++    C+  PR L PV  +E  M  +R  W  AKAE S LEPAL   LE LALVH     A  +  EGG L  ALE    D   +AGM+RR+ AQ L+ DR +R+++KL AVSAFL  R  R+   S   + RL  ETE     PL AD + ++KT+C QWK++IQK ER++  A+G PP L +KEE + +WY  Y++L  AL+
Sbjct:  486 WPTRATLIALASNPRRREWVDAIRKAKEFRFQCEMCPRGLEPVRALEAFMRHVRAIWAEAKAEDSALEPALGAALERLALVHARM--AYRVKQEGGGLTEALEEALLDPTVVAGMQRRRRAQALMTDRQKRVMIKLFAVSAFLNHRDFRD--SSAASVLRLRDETERIFSQPLTADSRASVKTICMQWKRLIQKSEREYEEAHGHPPLLSDKEENS-EWYGFYKKLRAALE 711
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BLAST of mRNA_S-ischiensis_contig1.1198.1 vs. uniprot
Match: A0A7S3YHH5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHH5_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 2.970e-7
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 3 
Query:   42 QKLALLLIYLSMRTSQASQAVFFCTVVSGWTLWSCSRP---PFRCRSSNVVHVLLQAALWATSFLGMMTGYGVRSSLLVAYTQFQSLSVLNG 308
            +K  L+++Y   R+S+  QA+    V + +T+    R    P+RC SSNV++++ +A L     LGMMTGYGV+SS+LVA  Q   L  +NG
Sbjct:   28 EKALLVMVYCYARSSKKHQAILMWAVFTFFTVHQVFRRGFGPYRCLSSNVLNLICRAGLLMDYTLGMMTGYGVQSSMLVASNQSIWLFAVNG 119
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BLAST of mRNA_S-ischiensis_contig1.1198.1 vs. uniprot
Match: A0A835YV13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV13_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-6
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:    6 AAHTFRRVAMLAQKLALLLIYLSMRTSQASQAVFFCTVVSGWTLWSCS-RPPFRCRSSNVVHVLLQAALW--ATSFLGMMTGYGVRSSLLVAYTQFQSLSVLNGAA 314
            AAH   R++    KL LL ++ ++R    +QA+ F  V++ WT W  + R P+RC SSN +     A +W  A SF GM+TGYGVRSS LVA  Q   L ++  AA
Sbjct:  296 AAH--HRLSTSTLKLTLLAVFAALRFRPRAQALLFWGVLTPWTAWVAALRRPYRCASSNAL-----ATIWFGALSF-GMLTGYGVRSSALVASAQAYWLGLIAAAA 393
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTA4_ECTSI2.410e-4545.02Transmembrane protein, putative n=2 Tax=Ectocarpus... [more]
A0A7S3YHH5_HETAK2.970e-740.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YV13_9STRA1.040e-642.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:8107258..8110861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D8LTA4
EggNOG OGs28N4Y@1,2QUQ3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontransmembrane protein, putative
Ec32 orthologEc-12_005820.1
Exons4
Model size1110
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1198.1prot_S-ischiensis_contig1.1198.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 8107803..8110861 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.2387073-UTR-S-ischiensis_contig1:8107257..81075831622815490.2387073-UTR-S-ischiensis_contig1:8107257..8107583Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8107258..8107583 +
1695739731.6704152-UTR-S-ischiensis_contig1:8107257..81075831695739731.6704152-UTR-S-ischiensis_contig1:8107257..8107583Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8107258..8107583 +
1622815490.2521095-UTR-S-ischiensis_contig1:8107621..81078021622815490.2521095-UTR-S-ischiensis_contig1:8107621..8107802Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8107622..8107802 +
1695739731.6803477-UTR-S-ischiensis_contig1:8107621..81078021695739731.6803477-UTR-S-ischiensis_contig1:8107621..8107802Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 8107622..8107802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815490.2648146-CDS-S-ischiensis_contig1:8107802..81080091622815490.2648146-CDS-S-ischiensis_contig1:8107802..8108009Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8107803..8108009 +
1695739731.6987622-CDS-S-ischiensis_contig1:8107802..81080091695739731.6987622-CDS-S-ischiensis_contig1:8107802..8108009Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8107803..8108009 +
1622815490.2786767-CDS-S-ischiensis_contig1:8108753..81090511622815490.2786767-CDS-S-ischiensis_contig1:8108753..8109051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8108754..8109051 +
1695739731.7126114-CDS-S-ischiensis_contig1:8108753..81090511695739731.7126114-CDS-S-ischiensis_contig1:8108753..8109051Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8108754..8109051 +
1622815490.2914274-CDS-S-ischiensis_contig1:8110763..81108611622815490.2914274-CDS-S-ischiensis_contig1:8110763..8110861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8110764..8110861 +
1695739731.721591-CDS-S-ischiensis_contig1:8110763..81108611695739731.721591-CDS-S-ischiensis_contig1:8110763..8110861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 8110764..8110861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1198.1

>prot_S-ischiensis_contig1.1198.1 ID=prot_S-ischiensis_contig1.1198.1|Name=mRNA_S-ischiensis_contig1.1198.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=201bp
MARLRRHWGHAKAEGSVLEPALRGGLEGLALVHQESSPASLLPGEGGPLA
AALEDGATIAGMRRRKHAQVLVGDRNRRILLKLLAVSAFLKDRTARNLKP
SPDMLARLHAETEEALRPPLRADCQGALKTLCSQWKKVIQKWERDFARAN
GRPPGLEEKEEVAGDWYAAYRRLHFALDRARALLVDPLTARRAAARLVGV
G
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mRNA from alignment at S-ischiensis_contig1:8107258..8110861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1198.1 ID=mRNA_S-ischiensis_contig1.1198.1|Name=mRNA_S-ischiensis_contig1.1198.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3604bp|location=Sequence derived from alignment at S-ischiensis_contig1:8107258..8110861+ (Schizocladia ischiensis KU_0333)
GCCTGGCCGCACACACGTTCCGCAGGGTTGCCATGCTGGCCCAGAAACTG
GCGCTGCTCCTCATCTACCTCTCCATGAGGACGTCCCAGGCCTCGCAGGC
GGTCTTCTTCTGCACGGTTGTATCGGGCTGGACACTGTGGTCGTGCTCCC
GGCCCCCCTTCCGCTGCCGCTCGTCCAACGTCGTGCACGTCTTGCTGCAG
GCCGCCCTGTGGGCCACCTCCTTCCTGGGCATGATGACCGGGTACGGCGT
CCGCAGCAGCCTCCTTGTGGCCTACACGCAGTTCCAGAGCCTGTCCGTCC
TCAACGGGGCGGCGATCGGCGGCGCGGCCCTCTACCTGGCCGCCTTGCTT
GCCTTTGACCGGAGGCGCCAACGCCTGGGCCAGGAGCGCGTCCACATCTG
GCCGGCGCGGGCTGCCCTGAAATGTCTCCTCGACGACCCTCGGAAGGTGC
GCTGGGCGGACACCGTGAGAGCGGCCAGGGACACCGCCGTGGCCTGCCAG
GCGGGGCCACGGGAGCTCGTGCCGGTGCACTGGGTGGAGGAGCTTATGGC
CCGGTTACGGCGCCACTGGGGCCACGCCAAGGCAGAGGGCAGCGTGCTGG
AGCCGGCGCTGCGGGGGGGCCTTGAAGGGCTGGCCTTGGTGCACCAGGAG
AGCTCCCCGGCCTCCCTGCTGCCGGGCGAGGGCGGGCCCCTGGCCGCGGC
GCTGGAGGACGGGGCCACCATCGCCGGGATGAGGAGGCGCAAGCACGCTC
AGGTGGGCGGGGGGGGGGGGGTAGTGTCATGCCCAACTCCCAATTAAGTT
TCGTTATATATTGATGGACTCAGTGAGTTACAATTCGTGAGGTTAATGGT
AAGACCATGCCTATTGTAGGACTTTGCCACACTTGAGTATTTGGAAGAAC
TGAGGCATGTGCTTGTCAATGCTCGCACTGTGCTGTTGTAGAGCTAGAGT
AGTTAAACATTGATGCTCTGCACTGGGGCCGGCGGATCTGTTGCGGCCTA
TTGGTGCACTTCAAGCTGCCACCACTGTAGTATGACCACACTTGGCCCAT
GTACGATACTCCGTCAGGGTGTTCACCGGTGCAACGCCACAGACATCCCA
AGTACGTCCAGCACCTACAGGTGCACACGCTGGTCGCTCAATATGCCCTT
CGCGCTCAGCACATTACCCGAATGCGGTCGTACGAGTGCTTCTCCAGCAC
TCTATGATCACTCGGCTTACCAGACGGTATCCAGTACACTACTGTACAGT
GCATGCGTATTCGAGTAGCACTTCCTCCGTTGAAACTCTCTTGGCTGACC
AGAGTGGGGGCTACATGCATATGTACGAGTACAGCAGGACTATGGCATCG
TGTACTCTCGAGTATGTATTCCGGATACCTACGTGCCAAACTACTGTGCA
GTACACCGCTATGGTAGTGTACACTCTACAGTCACACCTGAACGTTGCCT
CTACTCCCAATCCCGGCCCGCCGGCCCCACCTGCCCCGGCTACCAGGTGC
TGGTCGGCGATCGCAATCGCCGCATCCTCCTCAAGCTCCTGGCCGTTTCA
GCCTTCCTCAAGGACCGCACTGCCAGAAACCTAAAGCCCTCCCCGGACAT
GCTGGCGCGCCTACACGCGGAGACGGAAGAGGCGCTAAGGCCGCCGCTGC
GGGCCGATTGCCAGGGCGCCCTGAAGACGCTCTGCTCGCAGTGGAAGAAA
GTCATCCAGAAGTGGGAGCGGGATTTTGCGCGCGCCAACGGCCGGCCCCC
GGGCCTGGAGGAGAAGGAGGAGGTGGCGGGCGACTGGTATGCAGGTGTGT
GTGTGTGTGGGAGAGAGAGAGGGGCGGGGGTGTACGACAAGAGGAGGGGA
GGGCTAGGTGTGGGGGAATGCACGAGATCCCTGGATCTCCCAAGCACTTT
CAAGGACGCGCGGATGCTTTGCAGTATTATACAAGCACTTCCGGAAGTAC
TAACCATTAGCTTGCCTCACTCAGCCCGAACACAGACAGCACAGACCGCT
CCGACTCTGCAAACGGTCACTGTGTAAATAGCTTGTCGGAAGGTCGTGAC
CTAGTGCGAGCAAGAGCAAGAGCCTACCACAGATGGCACCGCGGGCCTGA
GATCATATGCCCTGGCACGATCACGTATGTACAGTAGATGTCATCTCCAA
AGGATGCAGGTTCTCTCGGAGTTGTTGACTGTGACGCACCGCTCAGGCTA
AGGCTAGAACATGCAATAGGCCGAGTCGGGGCCATGAGGCATGCATGAGC
TTGCAGGAGCGCTCAAGTGTCGGAAAAATGGACATCAGGCAAGGTGTACT
TCGAAGTACGAGTAAGAGCATTGCGCAAAGCTTTCAGGCATCAGTGAGGT
CGTGACGCACACTCCAGTACTTCGTATTATGCTAGTACAGTTTCTGGGTG
GCCCCTCCCTCCCACCGTGGCTTGCGTGCGAGGGTGGAAGGGAGCGAGAT
TGCTCCGCCGTCAAGGTTGCGTGGTCAATGGTCTCTGGACTACGGCAAGC
ACTGTTAGGTGTGAGTACATAATGCAGTTTCTGGCGGGCATCTGTGGCCT
GCGATGCCCCCCCACGTGTTAAAAGGCGCCGCTGCCGCCGCTGGCCGTGC
TTCTCTCAGGCAGCCCCCGACTTTGCCTGTCACATGTACTTGGAAGTACT
TGGAAGTACTTGGAATTACGACTGCTTCATCAATTACAATACACCTCACC
TGGGGCTTACTGCAGTGGTATCTACAGTAAGGCACACCTGTGGTACTCTG
CATGCAGAGGGTCACCACTGCGTACCGCAACTGCTGGGGTGCCCCGGGGC
CCACACATGCACCACACACACACACACACACACACACACGTGTACGCGTA
CACACACATGTGTGTGCTCGAGTATGCATGCAGTACACACACAAAGTACT
TCCACCTACGCCCCGCAGCCGCCAACAGGTGGGCTTGCGGGCCCACAACA
TGCCCTTCCCTTGTCCAGAGAGGTACTCTATACTTGGAAGTACCTACACA
ACAGAGAGGTACATTTGGAATTGCCTACACCAAGCCTCCGAGTCCGCCGC
CTGCTGGCCCGGGCTTCCGCCCCAGGGCTTGGCCAGTCGCTCCCAGGCTG
GGCACCCCTGGGTTCCCCCGGCCTGACACTGACAAATCTCGCCCCCCTTT
CAGTAGAGCTCAACCGGCATGGCCCAAACAATGCGCCCGCCCATCCGCCC
ACCCGCCCACCCCCCCCTAGCATTTTCGGCTCTTCTGTGTCGTAGGCGTA
GTAGGTATAGCCCTATGTGCATGCAGAGTATGAGGAGCAAGTACAGTAGA
GTATCTTACCTAGATGCCACTTTGTACGCCAAGCGAGGCGTTCACTTTTA
ACGGGCAAAGCAACAGCTGTACTTCCTGAGGTGTTGACTAGCCAATGAGT
ACAGTAGTTGGGGAGACCTGAGTTTCGATAACCCAAGTACTGTAGCTAGG
GGGCTGAGTTTCAGGATACCCAAGTAGCTATCAACGATTGTCCCCGCACT
GGCCAGCCTACCGCAGGTTGCACTTTGCGCTGGACCGCGCCCGGGCGCTG
CTGGTGGACCCGCTCACGGCGCGCCGGGCGGCGGCAAGGCTCGTCGGTGT
GGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:8107258..8110861+

>mRNA_S-ischiensis_contig1.1198.1 ID=mRNA_S-ischiensis_contig1.1198.1|Name=mRNA_S-ischiensis_contig1.1198.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1206bp|location=Sequence derived from alignment at S-ischiensis_contig1:8107258..8110861+ (Schizocladia ischiensis KU_0333)
ATGGCCCGGTTACGGCGCCACTGGGGCCACGCCAAGGCAGAGGGCAGCGT
GCTGGAGCCGGCGCTGCGGGGGGGCCTTGAAGGGCTGGCCTTGGTGCACC
AGGAGAGCTCCCCGGCCTCCCTGCTGCCGGGCGAGGGCGGGCCCCTGGCC
GCGGCGCTGGAGGACGGGGCCACCATCGCCGGGATGAGGAGGCGCAAGCA
CGCTCAGATGGCCCGGTTACGGCGCCACTGGGGCCACGCCAAGGCAGAGG
GCAGCGTGCTGGAGCCGGCGCTGCGGGGGGGCCTTGAAGGGCTGGCCTTG
GTGCACCAGGAGAGCTCCCCGGCCTCCCTGCTGCCGGGCGAGGGCGGGCC
CCTGGCCGCGGCGCTGGAGGACGGGGCCACCATCGCCGGGATGAGGAGGC
GCAAGCACGCTCAGGTGCTGGTCGGCGATCGCAATCGCCGCATCCTCCTC
AAGCTCCTGGCCGTTTCAGCCTTCCTCAAGGACCGCACTGCCAGAAACCT
AAAGCCCTCCCCGGACATGCTGGCGCGCCTACACGCGGAGACGGAAGAGG
CGCTAAGGCCGCCGCTGCGGGCCGATTGCCAGGGCGCCCTGAAGACGCTC
TGCTCGCAGTGGAAGAAAGTCATCCAGAAGTGGGAGCGGGATTTTGCGCG
CGCCAACGGCCGGCCCCCGGGCCTGGAGGAGAAGGAGGAGGTGGCGGGCG
ACTGGTATGCAGGTGCTGGTCGGCGATCGCAATCGCCGCATCCTCCTCAA
GCTCCTGGCCGTTTCAGCCTTCCTCAAGGACCGCACTGCCAGAAACCTAA
AGCCCTCCCCGGACATGCTGGCGCGCCTACACGCGGAGACGGAAGAGGCG
CTAAGGCCGCCGCTGCGGGCCGATTGCCAGGGCGCCCTGAAGACGCTCTG
CTCGCAGTGGAAGAAAGTCATCCAGAAGTGGGAGCGGGATTTTGCGCGCG
CCAACGGCCGGCCCCCGGGCCTGGAGGAGAAGGAGGAGGTGGCGGGCGAC
TGGTATGCAGCCTACCGCAGGTTGCACTTTGCGCTGGACCGCGCCCGGGC
GCTGCTGGTGGACCCGCTCACGGCGCGCCGGGCGGCGGCAAGGCTCGTCG
GTGTGGGCCCTACCGCAGGTTGCACTTTGCGCTGGACCGCGCCCGGGCGC
TGCTGGTGGACCCGCTCACGGCGCGCCGGGCGGCGGCAAGGCTCGTCGGT
GTGGGC
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