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Homology
BLAST of mRNA_S-ischiensis_contig1.119.1 vs. uniprot
Match: A0A6H5L288_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE) HSP 1 Score: 164 bits (416), Expect = 2.620e-42 Identity = 118/317 (37.22%), Postives = 173/317 (54.57%), Query Frame = 2
Query: 65 ASASAQVLTSLFLPSWEWGEVNIAATALNIVGAALAGLTKG--LAADGGCGQWLDSFHN----GFIAVFTSLAFTMEHAAHLVAVSSLGAGILYLVGSLVGGTAVYIVAFRIGRA--LSGPVSGAAKRSSVLP---VVRASAIPGLAALVVGCYVKARMPKTEWEDAFGWDARGEVSVEGAASDEAHELLWGVSMAIVGAQLGTAFSDLDFGAGAPGRIRWGTWRSNALAFAGVVTAHRTLVGWAPSARARVLRSAPFTAMVSAGLGAVSGFADTAGDAGELVMEGDLRGASANLALNAGTAAFAALVRMRSELLLV 982
A+A+A +LT +P WEW V+++AT LNI G+ AGL G +A + + + ++ GF+AV+TSLAF +EH AHL V+SL AG+ YL+ S++ G VY+ A R GR +S AKR + + + + +AA+ G ++ + P H+L WG+ MA++G +G FS L+ GA GRI WG WR NAL+FAGV+TA R P R L SA F A+V+ G G +SGF+D + DAG+L ++GD GA+AN+ LN TA A R ++ + +
Sbjct: 11 AAATAFLLTDALVPVWEWNGVDVSATLLNISGSFFAGLANGGGMAPEDSKNSEVRAANSIVISGFLAVWTSLAFVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWGSWMAGQHP--------------------------HKLGWGIIMAVMGGIIGNWFSTLN--GGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMLLNIATAVVALFARFKAAKIFI 299
BLAST of mRNA_S-ischiensis_contig1.119.1 vs. uniprot
Match: A0A5D6Y272_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y272_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 5.900e-6 Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 2
Query: 35 LSSQRILTLLASASAQVLTSLFLPSWEWGEVNIAATALNIVGAALAGLTKGLAA---DGGCGQWLDSFHNGFIAVFTSLAFTMEHAAHLVAVSSLGAGILYLVGSLVGGTAVY------IVAFRIGRALSGPVSGAAKRSSVLP 439
L++ + L +A+A+ +T+ P W VN+ ATALNIVG L GL+ G+ A G F + F+ VFTS F ++HA L A S++ G LY+ GS+ A + + RA++ PV A RS LP
Sbjct: 58 LNATYLWLLALAATAECITTCVWPQWRGARVNVGATALNIVGPFLDGLSYGVEALPKRGAPSVACLQFRSAFLGVFTSFPFMVDHAGDLSARSAV-LGPLYICGSVAAACAAFHAGCSVVQPLATSRAVANPVRALA-RSKRLP 199
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-01_006830.2 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Model size | 1952 |
| Cds size | 999 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815387.6564271-UTR-S-ischiensis_contig1:786213..786238 | 1622815387.6564271-UTR-S-ischiensis_contig1:786213..786238 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 786214..786238 + |
| 1695739674.519301-UTR-S-ischiensis_contig1:786213..786238 | 1695739674.519301-UTR-S-ischiensis_contig1:786213..786238 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 786214..786238 + |
| 1622815387.7458851-UTR-S-ischiensis_contig1:789614..790542 | 1622815387.7458851-UTR-S-ischiensis_contig1:789614..790542 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 789615..790542 + |
| 1695739674.5880167-UTR-S-ischiensis_contig1:789614..790542 | 1695739674.5880167-UTR-S-ischiensis_contig1:789614..790542 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 789615..790542 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815387.6762495-CDS-S-ischiensis_contig1:786238..786600 | 1622815387.6762495-CDS-S-ischiensis_contig1:786238..786600 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 786239..786600 + |
| 1695739674.5359755-CDS-S-ischiensis_contig1:786238..786600 | 1695739674.5359755-CDS-S-ischiensis_contig1:786238..786600 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 786239..786600 + |
| 1622815387.6947494-CDS-S-ischiensis_contig1:786755..786994 | 1622815387.6947494-CDS-S-ischiensis_contig1:786755..786994 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 786756..786994 + |
| 1695739674.5458128-CDS-S-ischiensis_contig1:786755..786994 | 1695739674.5458128-CDS-S-ischiensis_contig1:786755..786994 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 786756..786994 + |
| 1622815387.708979-CDS-S-ischiensis_contig1:787315..787379 | 1622815387.708979-CDS-S-ischiensis_contig1:787315..787379 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 787316..787379 + |
| 1695739674.555451-CDS-S-ischiensis_contig1:787315..787379 | 1695739674.555451-CDS-S-ischiensis_contig1:787315..787379 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 787316..787379 + |
| 1622815387.7198887-CDS-S-ischiensis_contig1:788211..788404 | 1622815387.7198887-CDS-S-ischiensis_contig1:788211..788404 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 788212..788404 + |
| 1695739674.5653036-CDS-S-ischiensis_contig1:788211..788404 | 1695739674.5653036-CDS-S-ischiensis_contig1:788211..788404 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 788212..788404 + |
| 1622815387.734116-CDS-S-ischiensis_contig1:789473..789614 | 1622815387.734116-CDS-S-ischiensis_contig1:789473..789614 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 789474..789614 + |
| 1695739674.5767815-CDS-S-ischiensis_contig1:789473..789614 | 1695739674.5767815-CDS-S-ischiensis_contig1:789473..789614 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 789474..789614 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.119.1 >prot_S-ischiensis_contig1.119.1 ID=prot_S-ischiensis_contig1.119.1|Name=mRNA_S-ischiensis_contig1.119.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=333bp
MSPLSSQRILTLLASASAQVLTSLFLPSWEWGEVNIAATALNIVGAALAG LTKGLAADGGCGQWLDSFHNGFIAVFTSLAFTMEHAAHLVAVSSLGAGIL YLVGSLVGGTAVYIVAFRIGRALSGPVSGAAKRSSVLPVVRASAIPGLAA LVVGCYVKARMPKTEWEDAFGWDARGEVSVEGAASDEAHELLWGVSMAIV GAQLGTAFSDLDFGAGAPGRIRWGTWRSNALAFAGVVTAHRTLVGWAPSA RARVLRSAPFTAMVSAGLGAVSGFADTAGDAGELVMEGDLRGASANLALN AGTAAFAALVRMRSELLLVGLGGGSDSESRHD* back to topmRNA from alignment at S-ischiensis_contig1:786214..790542+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig1.119.1 ID=mRNA_S-ischiensis_contig1.119.1|Name=mRNA_S-ischiensis_contig1.119.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4329bp|location=Sequence derived from alignment at S-ischiensis_contig1:786214..790542+ (Schizocladia ischiensis KU_0333) GCGGCCAGCGGGAGGAAGAGGGGCAATGTCGCCACTATCTTCGCAGCGAA
TACTCACGTTATTGGCTTCAGCGTCGGCTCAAGTGCTGACAAGCCTCTTC
CTCCCCTCTTGGGAATGGGGCGAGGTGAACATCGCCGCCACAGCCTTAAA
CATCGTGGGGGCTGCTTTGGCTGGGTTGACGAAAGGTTTGGCGGCGGACG
GTGGCTGTGGCCAGTGGCTGGACAGCTTCCACAACGGCTTTATCGCCGTA
TTTACCAGCCTTGCCTTCACCATGGAGCACGCCGCACACCTGGTGGCCGT
CTCCTCTTTGGGCGCTGGGATCCTCTACCTCGTGGGCTCGCTGGTTGGGG
GGACGGCGGTGTACATCGTCGCATTCAGGATCGGCAGGTGAGGCATTGGC
CACCAAAAAGCCATGCAAGACGACCACAAGACGCACAGGCAGTGCAGCAT
GTCCGTTTGCCACGCAGCTTGTTCGCTTGCCCCGAGCGCCCACGCCGTGC
CCCTAACGCGTACCCGTGCTGCACTCCCTGACACCACGATAGGGCACTCT
CTGGCCCGGTGTCTGGGGCTGCGAAACGCAGCAGCGTACTCCCCGTCGTG
CGAGCATCTGCCATCCCGGGCCTCGCGGCATTGGTCGTGGGGTGCTACGT
GAAGGCTCGCATGCCCAAGACAGAGTGGGAGGATGCCTTCGGCTGGGATG
CCCGGGGAGAGGTGTCGGTTGAGGGTGCGGCCTCCGACGAGGCTCATGAG
CTCTTGTGGGGCGTGTCCATGGCAATTGTCGGTGAGACACAGGCAGAGCC
GTTTTTGAAGCTGCGCGCTCTAGACATGGGCTTGTACTGTACCTGTACTT
CAAGGTATACACTGTAGGTATTTGTACATGAGTGTGTATACTTCAAAGTA
CACACTGTACTCGAGTACATCTTTTCGACGAAGCACTGCAATAGCACTGT
GCATTAAAGCCTGTAGCTCTGCTGGCCTTGCTCGCGCCGCCCGTGCACTT
GCGGCACACCCCCTTCTCTGCCTCCGTCCTACCCACTTACCCCCCACCCA
AACACGCACACACACAAACACATGGGTGTACGCCTCGCCCTGTGGGAGCA
AGGCGCTCAACTGGGAACCGCCTTCTCGGACCTGGACTTCGGCGCCGGCG
CCCCAGGCCGCATCAGGCGAGTCCCGTGGGCCGCCGCGGCTTTGGCGCAA
AACGACCGCGATGCTGCACCGCGGCAATTCCCTATTCTTCTTCCTCTGTG
CCTGCTTGTCTGTCTCTGCGTCCGCCTATATCTGCCTGTCTGCCTGTCTA
CCCGTCTGCCCGGCGGACTGGCTGGCCCAGGGTTGGCACCTAGAGGTTAA
CTAGGGCTTAATTAGCCTTAATTTTAGGTCTAATTACCCCGAATTACCTC
TAATTAGGGGCCTAAAAGGGCACCACTGAGGGGTTAAGTGCCAACCCTGG
GTTGGCCGGCTGCCTGCTCCTGCTCCGGCCCGCCCGTCCGTCTGCCTGGC
CTGTCTGTCTGTCCGCCATCTGTCCTTCCATTTGCCTTGTCTGCCTGCCT
GCCTGCCTGCCTGCTACAAGTACGACCAAAAACACATGGGACATGATAGA
CTCTGACAACCCGCAGCAGGCAAGTGAAAGACTACATGCATCTGCCTGCA
TGGTCCCTGTGCCTCCCCCCACCCCCCCTCCCCCCACCACCCACTGTACT
GTAGTAATTGCAGCCTGAGTATTATTTGACGTCCGCTCTCGACTCAGTTG
TGGCGAATTCTCCTCAACCCGTCCTGGCCAGGTTGGGAAGCTGAGAGAGA
CAACCCGAGCCTCCCCCCCCAACCAACAGCAATTGACCGCGAAGAAAAAA
CAAGAACGCAAACAGAAAATAACACGGACTTGTAAGAAGGGCTTCTGGTG
AGGTCCCCACCTTAGAGTAGGTTGGTGGGACGGTGCCCGGAACTCACATA
CTGTCACAATGCTTACCTTAAATAAAAGAACACGGACTCGTCTGCCAGGT
GGGGCACCTGGAGGTCCAACGCGCTCGCCTTCGCAGGCGTTGTCACGGCC
CACCGCACGCTGGTCGGCTGGGCCCCCTCGGCCCGGGCCCGGGTCCTGCG
CAGCGCCCCCTTCACGGCCATGGTGTCTGCGGGGCTCGGGGCGGTGTCTG
GCTTCGCGGACACGGCCGGCGACGCCGGGGAGCTTGTCATGGTGCGTGCT
TTAAACACAAAAAATACTCTGCCAGGGGAGGGAGGGGTCCTGCTCCGTCT
CGACCGAGGCGCGTGGTCAATGATCTCGGGACTACGGCAAGCACAACGTG
AGTAGGTACATATACTCGAGTATATATATATATATATATATATATATATA
TGTGTTGTGATGGTATGCGAGTTCCGGGCCCCGTCCCAACAACCTAAGGT
GGCGACCTCACCAGTAGCCCTTCTTTGCACCCGCAGGGCACAAAAATCAA
GCAAAGAGGCAATAGACAAAGGCAATGCAGGGTGGTCTCTCTCGTGCCGC
TTTATTTTGGTGCTTCCACTCATGCTCGAGTTGCCCTGGCTCGCCGCACC
AGGCCCTCAGGCTGGCTTTATCGACGAATACTGTGAACAGTAGACTTTTT
TCAGTACTCTGCAAAATTACTGTTTCCCTCAGGGCTTTACGGTACGCAAT
AAACTTTCAAGATGAATGTGTATGGTACGAAGTACGTACTGTGAGAGTAT
TGTTGGCTATTGCTGTACGAGTAGTCTTTAATTGCCCCTGCACCATATAG
TACTTTTTGCCCCTGCAACATACTATTACGAGAACAGTCAATCACACACA
CGTGCGATTGTACCTCGTTACAATTTATATGAATCACTGCCCCTGCACCA
AGTCAGTTGGCAACTGTGTAGAATATGTAATATGTACTTCAAGTACTGTA
TCAGTTGCCACCTGATGTGGTGCAGGGGTAGTTGAAAAGACTACGAGCAC
ACTACCGTAACAAATAGCCTGACCGCAAAGTTCTTGCTACAGACAAATGC
ACAGCAATTGCTGCATCCAAATTACTCCAATCACCGTACGAGTCTCGAGT
ACTCTTATGCTAGTTACCACGGGTCAGAAACCTACCCACGGTTGACCCCT
GCTGTCTCATCCGTCCCTCCGCCTGTCTGCCTGGCGCTTCGATCATCCAT
GTCTGCATCCCCCCCCGCCCCCCTCGCCACACGTGCCCTGCACCCCGTTA
ACACTTTTTTTGCAACGGCCCGGCCCGGCCCGGCCCGGGGGCGCGTGCAC
ACACTGTCAGGAAGGCGACCTGCGCGGGGCGTCAGCAAACCTGGCCCTCA
ATGCGGGGACGGCGGCGTTCGCCGCCTTGGTGCGCATGCGGTCAGAGCTG
CTCTTGGTAGGACTCGGGGGAGGCTCCGACTCTGAGTCGCGGCACGATTA
GCATTTCAAGTTAAATCAACGGCACGGGTGAATTTAAGAGAGAAGTATAT
TATATATATACTCAAGCACTGGAGTACACGAAATTAATAGAGAAGTATAC
ATTTTGAGTGGTAGAAGAGCGGCGAGTTCCAGGCCCCGTGCCGAAAGGCT
CGTCCCCAAACTATATATATATGTGTGTGTGTGTATATGTACTCACGTGG
TGCTTGCCGTAGTCCCGAGACCATTGACCCCGCGCTTCGTGCGAGGCGGA
GGAGTAGAGTAGGTAATCATCGTGGACATCTCCGTTGCATGCGGACCCCC
AGGCATCCTCCCACCTCCAGGGCGGGGTCGCGGTGGCGGCACTCTGACGG
CACCGAGTTGTTCAAGCGTTGAACGTACGCTCAGTGACACCCCAACCTTC
CGAGTCGTCCTTCTTCCGAGTACGTTCAATTTCAATGGGTGGGTGTCTGT
ACCAGCTTGACTTGACCCCGGTTGCGGCGGGAAGCTTTGGGCGACTTCGC
GTACCGCATTGAAGAGCCTAGGAGGACCCGTAGAAACAATTTTTTTTTCT
CGAGAACTTACGAAAGCTGCCAGTGGCTTTGAAAGACAAAACCATGCAAG
ACATGTGTGCAGTAGCTTTACCTGTAACAACAGGTTGCCCGCCGTTATCA
ATGCCCGCCGGCCATCCACGTCGAGCCTTCTGAATCAGCGGCTATGGTAA
CCGTGCCGGCAGATTTTGTCCATGCGCTTGCTTGTAGTTCGAGCACAAGT
TGCTGCATCTCGCCGTGCGCAACTGTTACAGTCCCTCCGGCCAGGTGTCA
CAACAGTAACTACATATGTGTGTCACCGGGGTCGCAGCGTAGCTCGTGGT
CTGGTGGCTACTTGGGACACCCTGCCAGAGTGATGTTGTCTTGATATTCA
GAAGCCTTGTCTGTACTGTGAGACATACG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig1:786214..790542+ >mRNA_S-ischiensis_contig1.119.1 ID=mRNA_S-ischiensis_contig1.119.1|Name=mRNA_S-ischiensis_contig1.119.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1998bp|location=Sequence derived from alignment at S-ischiensis_contig1:786214..790542+ (Schizocladia ischiensis KU_0333) ATGTCGCCACTATCTTCGCAGCGAATACTCACGTTATTGGCTTCAGCGTC GGCTCAAGTGCTGACAAGCCTCTTCCTCCCCTCTTGGGAATGGGGCGAGG TGAACATCGCCGCCACAGCCTTAAACATCGTGGGGGCTGCTTTGGCTGGG TTGACGAAAGGTTTGGCGGCGGACGGTGGCTGTGGCCAGTGGCTGGACAG CTTCCACAACGGCTTTATCGCCGTATTTACCAGCCTTGCCTTCACCATGG AGCACGCCGCACACCTGGTGGCCGTCTCCTCTTTGGGCGCTGGGATCCTC TACCTCGTGGGCTCGCTGGTTGGGGGGACGGCGGTGTACATCGTCGCATT CAGGATCGGCAGATGTCGCCACTATCTTCGCAGCGAATACTCACGTTATT GGCTTCAGCGTCGGCTCAAGTGCTGACAAGCCTCTTCCTCCCCTCTTGGG AATGGGGCGAGGTGAACATCGCCGCCACAGCCTTAAACATCGTGGGGGCT GCTTTGGCTGGGTTGACGAAAGGTTTGGCGGCGGACGGTGGCTGTGGCCA GTGGCTGGACAGCTTCCACAACGGCTTTATCGCCGTATTTACCAGCCTTG CCTTCACCATGGAGCACGCCGCACACCTGGTGGCCGTCTCCTCTTTGGGC GCTGGGATCCTCTACCTCGTGGGCTCGCTGGTTGGGGGGACGGCGGTGTA CATCGTCGCATTCAGGATCGGCAGGGCACTCTCTGGCCCGGTGTCTGGGG CTGCGAAACGCAGCAGCGTACTCCCCGTCGTGCGAGCATCTGCCATCCCG GGCCTCGCGGCATTGGTCGTGGGGTGCTACGTGAAGGCTCGCATGCCCAA GACAGAGTGGGAGGATGCCTTCGGCTGGGATGCCCGGGGAGAGGTGTCGG TTGAGGGTGCGGCCTCCGACGAGGCTCATGAGCTCTTGTGGGGCGTGTCC ATGGCAATTGTCGGGCACTCTCTGGCCCGGTGTCTGGGGCTGCGAAACGC AGCAGCGTACTCCCCGTCGTGCGAGCATCTGCCATCCCGGGCCTCGCGGC ATTGGTCGTGGGGTGCTACGTGAAGGCTCGCATGCCCAAGACAGAGTGGG AGGATGCCTTCGGCTGGGATGCCCGGGGAGAGGTGTCGGTTGAGGGTGCG GCCTCCGACGAGGCTCATGAGCTCTTGTGGGGCGTGTCCATGGCAATTGT CGGCGCTCAACTGGGAACCGCCTTCTCGGACCTGGACTTCGGCGCCGGCG CCCCAGGCCGCATCAGGCGCTCAACTGGGAACCGCCTTCTCGGACCTGGA CTTCGGCGCCGGCGCCCCAGGCCGCATCAGGTGGGGCACCTGGAGGTCCA ACGCGCTCGCCTTCGCAGGCGTTGTCACGGCCCACCGCACGCTGGTCGGC TGGGCCCCCTCGGCCCGGGCCCGGGTCCTGCGCAGCGCCCCCTTCACGGC CATGGTGTCTGCGGGGCTCGGGGCGGTGTCTGGCTTCGCGGACACGGCCG GCGACGCCGGGGAGCTTGTCATGGTGGGGCACCTGGAGGTCCAACGCGCT CGCCTTCGCAGGCGTTGTCACGGCCCACCGCACGCTGGTCGGCTGGGCCC CCTCGGCCCGGGCCCGGGTCCTGCGCAGCGCCCCCTTCACGGCCATGGTG TCTGCGGGGCTCGGGGCGGTGTCTGGCTTCGCGGACACGGCCGGCGACGC CGGGGAGCTTGTCATGGAAGGCGACCTGCGCGGGGCGTCAGCAAACCTGG CCCTCAATGCGGGGACGGCGGCGTTCGCCGCCTTGGTGCGCATGCGGTCA GAGCTGCTCTTGGTAGGACTCGGGGGAGGCTCCGACTCTGAGTCGCGGCA CGATTAGGAAGGCGACCTGCGCGGGGCGTCAGCAAACCTGGCCCTCAATG CGGGGACGGCGGCGTTCGCCGCCTTGGTGCGCATGCGGTCAGAGCTGCTC TTGGTAGGACTCGGGGGAGGCTCCGACTCTGAGTCGCGGCACGATTAG back to top
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