prot_S-ischiensis_contig1.119.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig1.119.1
Unique Nameprot_S-ischiensis_contig1.119.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length333
Homology
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BLAST of mRNA_S-ischiensis_contig1.119.1 vs. uniprot
Match: A0A6H5L288_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 8.140e-45
Identity = 118/317 (37.22%), Postives = 173/317 (54.57%), Query Frame = 0 
Query:   14 ASASAQVLTSLFLPSWEWGEVNIAATALNIVGAALAGLTKG--LAADGGCGQWLDSFHN----GFIAVFTSLAFTMEHAAHLVAVSSLGAGILYLVGSLVGGTAVYIVAFRIGRA--LSGPVSGAAKRSSVLP---VVRASAIPGLAALVVGCYVKARMPKTEWEDAFGWDARGEVSVEGAASDEAHELLWGVSMAIVGAQLGTAFSDLDFGAGAPGRIRWGTWRSNALAFAGVVTAHRTLVGWAPSARARVLRSAPFTAMVSAGLGAVSGFADTAGDAGELVMEGDLRGASANLALNAGTAAFAALVRMRSELLLV 319
            A+A+A +LT   +P WEW  V+++AT LNI G+  AGL  G  +A +      + + ++    GF+AV+TSLAF +EH AHL  V+SL AG+ YL+ S++ G  VY+ A R GR   +S      AKR  +       + + +  +AA+  G ++  + P                          H+L WG+ MA++G  +G  FS L+   GA GRI WG WR NAL+FAGV+TA R      P  R   L SA F A+V+ G G +SGF+D + DAG+L ++GD  GA+AN+ LN  TA  A   R ++  + +
Sbjct:   11 AAATAFLLTDALVPVWEWNGVDVSATLLNISGSFFAGLANGGGMAPEDSKNSEVRAANSIVISGFLAVWTSLAFVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWGSWMAGQHP--------------------------HKLGWGIIMAVMGGIIGNWFSTLN--GGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMLLNIATAVVALFARFKAAKIFI 299
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BLAST of mRNA_S-ischiensis_contig1.119.1 vs. uniprot
Match: A0A5D6Y272_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y272_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.060e-6
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 0 
Query:   12 LLASASAQVLTSLFLPSWEWGEVNIAATALNIVGAALAGLTKGLAA---DGGCGQWLDSFHNGFIAVFTSLAFTMEHAAHLVAVSSLGAGILYLVGSLVGGTAVY------IVAFRIGRALSGPVSGAAKRSSVLP 138
            L  +A+A+ +T+   P W    VN+ ATALNIVG  L GL+ G+ A    G        F + F+ VFTS  F ++HA  L A S++  G LY+ GS+    A +      +      RA++ PV   A RS  LP
Sbjct:   66 LALAATAECITTCVWPQWRGARVNVGATALNIVGPFLDGLSYGVEALPKRGAPSVACLQFRSAFLGVFTSFPFMVDHAGDLSARSAV-LGPLYICGSVAAACAAFHAGCSVVQPLATSRAVANPVRALA-RSKRLP 199
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L288_9PHAE8.140e-4537.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6Y272_9STRA3.060e-636.03Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..332
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 120..138
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..98
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 99..119
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..92
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableTMHMMTMhelixcoord: 98..120
NoneNo IPR availableTMHMMTMhelixcoord: 34..56
NoneNo IPR availableTMHMMTMhelixcoord: 71..93
NoneNo IPR availableTMHMMTMhelixcoord: 10..27
NoneNo IPR availableTMHMMTMhelixcoord: 135..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:786239..789614 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.119.1mRNA_S-ischiensis_contig1.119.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig1 786214..790542 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig1.119.1 ID=prot_S-ischiensis_contig1.119.1|Name=mRNA_S-ischiensis_contig1.119.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=333bp
MSPLSSQRILTLLASASAQVLTSLFLPSWEWGEVNIAATALNIVGAALAG
LTKGLAADGGCGQWLDSFHNGFIAVFTSLAFTMEHAAHLVAVSSLGAGIL
YLVGSLVGGTAVYIVAFRIGRALSGPVSGAAKRSSVLPVVRASAIPGLAA
LVVGCYVKARMPKTEWEDAFGWDARGEVSVEGAASDEAHELLWGVSMAIV
GAQLGTAFSDLDFGAGAPGRIRWGTWRSNALAFAGVVTAHRTLVGWAPSA
RARVLRSAPFTAMVSAGLGAVSGFADTAGDAGELVMEGDLRGASANLALN
AGTAAFAALVRMRSELLLVGLGGGSDSESRHD*
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