mRNA_S-ischiensis_contig1.1043.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1043.1
Unique NamemRNA_S-ischiensis_contig1.1043.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1043.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.440e-13
Identity = 43/89 (48.31%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:  214 ACDSCSCPVPPEDAFYLETCGHKLCPRCVSDHVVAKPDVPVCPCADCGTPVSPRDISLVLGEEAWEAFQDWRLADFRLRLAKGARCSNC 480
            AC SCS  V   + F LE CGH LCP C+     A      CP   CG PVS RD++L+L E AW   Q  R+A FR R  KGARC  C
Sbjct:  123 ACSSCSKEV--RNPFPLERCGHTLCPGCLLTRASASE----CPVDGCGKPVSVRDLALILDENAWVDLQVKRVAAFRARARKGARCPKC 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A1_ECTSI4.440e-1348.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7223749..7224278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue7.4e-12
Seed eggNOG ortholog2880.D7G0A1
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
EC2.3.2.23,6.2.1.45
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.4255683-CDS-S-ischiensis_contig1:7223748..72242761622815478.4255683-CDS-S-ischiensis_contig1:7223748..7224276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7223749..7224276 +
1695739724.9288983-CDS-S-ischiensis_contig1:7223748..72242761695739724.9288983-CDS-S-ischiensis_contig1:7223748..7224276Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7223749..7224276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1043.1prot_S-ischiensis_contig1.1043.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7223749..7224276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1043.1

>prot_S-ischiensis_contig1.1043.1 ID=prot_S-ischiensis_contig1.1043.1|Name=mRNA_S-ischiensis_contig1.1043.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
EEEEGKAHRREARPSRVQERDGMGSEDEDALARVAGSGPRESPSLPVASS
GNAADRPVAGSTSGSSSRAGVACDSCSCPVPPEDAFYLETCGHKLCPRCV
SDHVVAKPDVPVCPCADCGTPVSPRDISLVLGEEAWEAFQDWRLADFRLR
LAKGARCSNCSLCLDPPPVPCAAASV
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mRNA from alignment at S-ischiensis_contig1:7223749..7224278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1043.1 ID=mRNA_S-ischiensis_contig1.1043.1|Name=mRNA_S-ischiensis_contig1.1043.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=530bp|location=Sequence derived from alignment at S-ischiensis_contig1:7223749..7224278+ (Schizocladia ischiensis KU_0333)
GAAGAAGAGGAGGGCAAGGCGCACCGCCGGGAGGCCCGGCCTTCAAGAGT
TCAGGAGAGGGACGGGATGGGCTCGGAGGATGAGGACGCGCTGGCGAGGG
TGGCTGGCAGCGGCCCGCGGGAGTCCCCCTCCCTGCCCGTCGCCAGCTCA
GGAAACGCTGCCGACCGGCCGGTAGCAGGATCCACGTCCGGCTCCTCCTC
GCGCGCTGGAGTGGCGTGTGATTCTTGCTCATGCCCTGTGCCGCCGGAGG
ACGCATTCTACCTGGAAACGTGCGGCCACAAGCTGTGCCCCCGCTGCGTG
AGCGACCACGTCGTGGCCAAGCCCGACGTGCCGGTCTGCCCGTGCGCGGA
CTGTGGCACGCCCGTGTCCCCGCGGGACATCTCGCTCGTCCTGGGCGAGG
AAGCCTGGGAGGCTTTTCAAGACTGGCGCCTGGCTGACTTCCGCCTTCGC
CTCGCCAAGGGCGCTCGTTGCTCCAACTGTAGCCTCTGCCTCGACCCCCC
CCCGGTGCCCTGCGCTGCTGCATCCGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7223749..7224278+

>mRNA_S-ischiensis_contig1.1043.1 ID=mRNA_S-ischiensis_contig1.1043.1|Name=mRNA_S-ischiensis_contig1.1043.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig1:7223749..7224278+ (Schizocladia ischiensis KU_0333)
GAAGAAGAGGAGGGCAAGGCGCACCGCCGGGAGGCCCGGCCTTCAAGAGT
TCAGGAGAGGGACGGGATGGGCTCGGAGGATGAGGACGCGCTGGCGAGGG
TGGCTGGCAGCGGCCCGCGGGAGTCCCCCTCCCTGCCCGTCGCCAGCTCA
GGAAACGCTGCCGACCGGCCGGTAGCAGGATCCACGTCCGGCTCCTCCTC
GCGCGCTGGAGTGGCGTGTGATTCTTGCTCATGCCCTGTGCCGCCGGAGG
ACGCATTCTACCTGGAAACGTGCGGCCACAAGCTGTGCCCCCGCTGCGTG
AGCGACCACGTCGTGGCCAAGCCCGACGTGCCGGTCTGCCCGTGCGCGGA
CTGTGGCACGCCCGTGTCCCCGCGGGACATCTCGCTCGTCCTGGGCGAGG
AAGCCTGGGAGGCTTTTCAAGACTGGCGCCTGGCTGACTTCCGCCTTCGC
CTCGCCAAGGGCGCTCGTTGCTCCAACTGTAGCCTCTGCCTCGACCCCCC
CCCGGTGCCCTGCGCTGCTGCATCCGTGGAAGAAGAGGAGGGCAAGGCGC
ACCGCCGGGAGGCCCGGCCTTCAAGAGTTCAGGAGAGGGACGGGATGGGC
TCGGAGGATGAGGACGCGCTGGCGAGGGTGGCTGGCAGCGGCCCGCGGGA
GTCCCCCTCCCTGCCCGTCGCCAGCTCAGGAAACGCTGCCGACCGGCCGG
TAGCAGGATCCACGTCCGGCTCCTCCTCGCGCGCTGGAGTGGCGTGTGAT
TCTTGCTCATGCCCTGTGCCGCCGGAGGACGCATTCTACCTGGAAACGTG
CGGCCACAAGCTGTGCCCCCGCTGCGTGAGCGACCACGTCGTGGCCAAGC
CCGACGTGCCGGTCTGCCCGTGCGCGGACTGTGGCACGCCCGTGTCCCCG
CGGGACATCTCGCTCGTCCTGGGCGAGGAAGCCTGGGAGGCTTTTCAAGA
CTGGCGCCTGGCTGACTTCCGCCTTCGCCTCGCCAAGGGCGCTCGTTGCT
CCAACTGTAGCCTCTGCCTCGACCCCCCCCCGGTGCCCTGCGCTGCTGCA
TCCGTG
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