prot_S-ischiensis_contig1.1043.1 (polypeptide) Schizocladia ischiensis KU_0333

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-ischiensis_contig1.1043.1
Unique Nameprot_S-ischiensis_contig1.1043.1
Typepolypeptide
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Sequence length176
Homology
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BLAST of mRNA_S-ischiensis_contig1.1043.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.440e-13
Identity = 43/89 (48.31%), Postives = 49/89 (55.06%), Query Frame = 0 
Query:   72 ACDSCSCPVPPEDAFYLETCGHKLCPRCVSDHVVAKPDVPVCPCADCGTPVSPRDISLVLGEEAWEAFQDWRLADFRLRLAKGARCSNC 160
            AC SCS  V   + F LE CGH LCP C+     A      CP   CG PVS RD++L+L E AW   Q  R+A FR R  KGARC  C
Sbjct:  123 ACSSCSKEV--RNPFPLERCGHTLCPGCLLTRASASE----CPVDGCGKPVSVRDLALILDENAWVDLQVKRVAAFRARARKGARCPKC 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1043.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A1_ECTSI4.440e-1348.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 67..148
e-value: 6.4E-9
score: 37.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 91..100
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 71..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7223749..7224276 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1043.1mRNA_S-ischiensis_contig1.1043.1Schizocladia ischiensis KU_0333mRNAS-ischiensis_contig1 7223749..7224278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-ischiensis_contig1.1043.1 ID=prot_S-ischiensis_contig1.1043.1|Name=mRNA_S-ischiensis_contig1.1043.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
EEEEGKAHRREARPSRVQERDGMGSEDEDALARVAGSGPRESPSLPVASS
GNAADRPVAGSTSGSSSRAGVACDSCSCPVPPEDAFYLETCGHKLCPRCV
SDHVVAKPDVPVCPCADCGTPVSPRDISLVLGEEAWEAFQDWRLADFRLR
LAKGARCSNCSLCLDPPPVPCAAASV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS