mRNA_S-ischiensis_contig1.1007.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1007.1
Unique NamemRNA_S-ischiensis_contig1.1007.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: W7TFS2_9STRA (Ankyrin repeat-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFS2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.910e-52
Identity = 91/197 (46.19%), Postives = 125/197 (63.45%), Query Frame = 3
Query:  366 GAAYRRPYTSRSKPSWADPFEKNEASPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWPRLP 956
            GA  +RP    ++P+       NEASP+ FL  +L ERGY T+ L +    + R PTAKQ+TDY   L   +R+GDL  L+    +GR+MDACN+FGES+VH++CR+G  E LRFLL+NGG +   DDLGR PLHD  WA  P F+ +   +++ P L+   D RG TPL YI+R++W  W+ F  + K+ YW  LP
Sbjct:  161 GAGCKRPRKKMTRPASEPALLNNEASPQDFLWGILQERGYETSPLLAKTQAFFRPPTAKQVTDYDIPLVTAVRTGDLGSLRDMAAAGRQMDACNRFGESIVHISCRRGQAETLRFLLENGGRVHMCDDLGRTPLHDACWAKVPVFDCVSAIMDQDPSLIRVVDCRGATPLSYIRREHWPEWREFFDSKKEKYWAPLP 357          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A6H5JAC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC0_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 3.250e-46
Identity = 97/233 (41.63%), Postives = 128/233 (54.94%), Query Frame = 3
Query:  444 PEAFLCSMLAERGY-PTAKLSSLGAGYMRAPTAKQLTDYAS--NLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPE------------------------------------------------------------LLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWPRL 953
            P+A L ++L +RG  P A +SS  AGY   PTAKQ+ DY +  +LSGL R+GD+ GLQ+AV +GR+MDACNKFGESVVH+ACR+G+  LL FL+ NGGSL   DDLGR PLH+V WA++PRF+++ + L    E                                                            +LL  D RGC+PLRY+K ++W AW+ FL  V D +WP L
Sbjct:  138 PDAHLIALLKKRGRTPKAIVSSAEAGYSVPPTAKQIMDYDAQPHLSGLARTGDMEGLQRAVNAGRRMDACNKFGESVVHVACRRGNLPLLLFLVANGGSLTACDDLGRFPLHEVCWAAQPRFDIVRVFLEHERETNXXXXXXXXXXXXXXXATTVSGAXXXXSDGESTXXXXXXXXXXXXXXXXXXXNIVVDLNMLLVTDKRGCSPLRYVKEESWPAWRQFLDEVVDEFWPSL 370          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A835ZH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH90_9STRA)

HSP 1 Score: 163 bits (412), Expect = 6.390e-44
Identity = 79/171 (46.20%), Postives = 109/171 (63.74%), Query Frame = 3
Query:  441 SPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGG--SLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWP 947
            +P  FL + LA RGYPT  + +L + Y   PTAKQ+ DY+ +L   +R+GDL  L++   +G  M+ACNKF ESVVH+A R G  E++ F+++  G  SL  SDD GR PLHD  W S P F+++   L+   E+LL  D RG TPL Y+K++ W AW  F+  +KD YWP
Sbjct:    3 NPHEFLIATLAARGYPTRTVVALESRYATKPTAKQVEDYSIDLVNAVRAGDLDTLREMHAAGCSMNACNKFAESVVHMAARIGAREVMEFMIECTGVESLAISDDYGRTPLHDACWTSEPFFDMVTFILDHEVEMLLVKDKRGFTPLLYVKKELWGAWHTFIDAIKDKYWP 173          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A6H5JNI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI0_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.570e-43
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 3
Query:  429 KNEASPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWPRLP 956
            K   SP+A+L ++L ERGY +   SS   G    PT KQL DY   L   +R  D+  L+     G  M A N+FGES+VHLA R+G   +LRFLL +GGSL   DD G+ PLHD  W + PRFEL+ + L     LL   D RG TPLRY K ++W +W  FL  VKD  WP LP
Sbjct:   93 KGVTSPQAYLEAILLERGYDSTPRSSASDGCRCTPTQKQLDDYQVPLVEAVRRWDMGALEALAADGVDMGASNRFGESIVHLATRRGSTPVLRFLLSHGGSLRICDDYGKTPLHDAFWTAEPRFELVAMMLEMDWGLLRATDVRGATPLRYAKNEHWASWCEFLDRVKDHLWPHLP 268          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A7S2RMJ8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMJ8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.990e-40
Identity = 71/171 (41.52%), Postives = 108/171 (63.16%), Query Frame = 3
Query:  432 NEASPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYW 944
            ++ +P+ F+ S+L  RGY T ++ SL   +   PT KQ+ DY       IR+ + A +Q     GR M+ACNK+GESV+H+ACR+GD +L+ F+++ GG L  +DD GR PLHD  W   P  ++++  LNK   LL   D RG +PL Y++R+++D W  F  ++KDT+W
Sbjct:  279 DKKNPDQFVDSLLVSRGYETTRIPSLQTEFRTVPTPKQIQDYDLAFVDAIRTSNYAAIQSFYDEGRSMNACNKYGESVMHMACRRGDGKLVSFMVELGGLLEITDDYGRTPLHDACWTPEPCLDVVMFLLNKNLRLLHLIDKRGFSPLAYVRREHYDVWTSFFDSMKDTWW 449          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A835ZG28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG28_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.110e-39
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  579 IRSGDLAGLQKAVQS-GRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWP 947
            +R+G +  L + V+  GR + ACNKFGES+ HLACRKG  +++  +L++GGSL   DDLGR+P HD  W SRPR++++ LHL     LLLT D RG TPLRY+KR NW AW+ FL  VKD YWP
Sbjct:    5 VRNGSVQELLRLVEEEGRTLSACNKFGESLAHLACRKGSADVVATILRHGGSLTRCDDLGRVPAHDTCWESRPRWDIVQLHLEADAALLLTRDARGWTPLRYVKRANWAAWRAFLDAVKDRYWP 128          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: B7G9J4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9J4_PHATC)

HSP 1 Score: 154 bits (390), Expect = 1.010e-37
Identity = 73/176 (41.48%), Postives = 105/176 (59.66%), Query Frame = 3
Query:  426 EKNEASPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWPRL 953
            EK   SP+++L  M+A RGY T K  +L   Y   PTA Q   Y   L  L++   +  L+   +SG   + CN FGES++H+ CR+GD +LL+ LL+ G +L  +DD GR PLHD  WA++P F ++ L L + P LL  +D RG  PL Y+++++W  W  +L   K TYWP L
Sbjct:  155 EKQAISPQSYLDDMIAARGYSTEKFKTLQTAYYNKPTALQQASYDVYLIDLVKKNGVETLRNIFKSGVSPNPCNTFGESLLHMICRRGDVDLLKVLLECGTNLQVADDYGRTPLHDACWAAKPAFAVVDLILERDPRLLYMSDCRGALPLSYVRKEHWCEWVPYLEARKHTYWPVL 330          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A7R9ZHX0_9STRA (Hypothetical protein n=6 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHX0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.000e-37
Identity = 80/178 (44.94%), Postives = 98/178 (55.06%), Query Frame = 3
Query:  432 NEASPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWPRLPVAA 965
            N  SP+ FL S+L  RGY TA   SL  GY   PT  Q   Y   L   +RS D   L   + SG   + CN FGES+VH+ CR+GD  LLR +L  G +L  SDD GR PLHD  W + P FE + L L +   LL   D RG +PL Y K+++W  W  +L   KDTYWP   V A
Sbjct:  390 NMVSPQTFLDSLLKTRGYSTASYCSLETGYYSKPTPYQKASYGLALVRAVRSSDGPTLSSMLASGLSRNPCNAFGESLVHMVCRRGDHGLLRVMLDRGATLQVSDDFGRTPLHDACWTAEPSFECVDLILERDVRLLRILDCRGSSPLSYAKKEHWSEWIEYLERKKDTYWPARDVKA 567          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A7S2M5W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M5W4_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.090e-35
Identity = 69/169 (40.83%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  441 SPEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAWKGFLATVKDTYWP 947
            SP  F  + L  RGYP     SL  GY   PT  Q + Y  +L+  IRS D   +Q  + +G   +ACNKFGES++H  CR+GD ++LR L                PLHD  W + P FE + L L K P LL   D RG TPL Y+++ +W  W GFL  + D YWP
Sbjct:  149 SPNDFFTAKLRSRGYPATTFCSLKGGYHSTPTTHQTSSYGISLTRAIRSSDKPQVQTLLSTGLNPNACNKFGESIIHAVCRRGDHDMLRILXXXXXXXXXXXXXXXXPLHDACWTASPNFETISLLLEKDPWLLSITDCRGSTPLGYVRKAHWAVWNGFLGAIIDRYWP 317          
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Match: A0A7S0SWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWK6_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.510e-35
Identity = 65/155 (41.94%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  444 PEAFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLAGLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDDLGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNWDAW 908
            P+ FL  +L+ RGY    + ++ + Y +AP+ KQ+ DY ++L   IR  DL+ L+  V  G  M ACN++ ES+VH+ACR+ DP ++ FLL+NGG    +DD GR PLHD  W   PRF+++ + L+    LL  AD RG  PL Y+++++W  W
Sbjct:  149 PDQFLLRLLSCRGYDYNLIPAVQSSYYKAPSEKQINDYTNDLINAIRYSDLSKLKALVDQGYSMSACNRYSESIVHMACRRSDPAVVDFLLKNGGDYYITDDFGRTPLHDACWRLDPRFDIVTMLLDNDLTLLRLADIRGSIPLCYVRQEHWAKW 303          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TFS2_9STRA4.910e-5246.19Ankyrin repeat-containing protein n=3 Tax=Monodops... [more]
A0A6H5JAC0_9PHAE3.250e-4641.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZH90_9STRA6.390e-4446.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNI0_9PHAE7.570e-4347.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RMJ8_9STRA6.990e-4041.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835ZG28_9STRA1.110e-3954.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7G9J4_PHATC1.010e-3741.48Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7R9ZHX0_9STRA2.000e-3744.94Hypothetical protein n=6 Tax=Pseudictyota dubia Ta... [more]
A0A7S2M5W4_9STRA2.090e-3540.83Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S0SWK6_9STRA3.510e-3541.94Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6965488..6967276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue6.4e-35
Seed eggNOG ortholog2850.Phatr39760
EggNOG free text desc.ankyrin repeats
EggNOG OGs2C0FJ@1,2S48R@2759,2XCZU@2836
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005070.2
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1624
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1007.1prot_S-ischiensis_contig1.1007.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6965787..6966665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.5111587-UTR-S-ischiensis_contig1:6965487..69657861622815475.5111587-UTR-S-ischiensis_contig1:6965487..6965786Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6965488..6965786 +
1695739723.1694083-UTR-S-ischiensis_contig1:6965487..69657861695739723.1694083-UTR-S-ischiensis_contig1:6965487..6965786Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6965488..6965786 +
1622815475.609834-UTR-S-ischiensis_contig1:6966665..69672761622815475.609834-UTR-S-ischiensis_contig1:6966665..6967276Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6966666..6967276 +
1695739723.2160826-UTR-S-ischiensis_contig1:6966665..69672761695739723.2160826-UTR-S-ischiensis_contig1:6966665..6967276Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6966666..6967276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.5256014-CDS-S-ischiensis_contig1:6965786..69661371622815475.5256014-CDS-S-ischiensis_contig1:6965786..6966137Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6965787..6966137 +
1695739723.1870348-CDS-S-ischiensis_contig1:6965786..69661371695739723.1870348-CDS-S-ischiensis_contig1:6965786..6966137Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6965787..6966137 +
1622815475.590744-CDS-S-ischiensis_contig1:6966302..69666651622815475.590744-CDS-S-ischiensis_contig1:6966302..6966665Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6966303..6966665 +
1695739723.2018416-CDS-S-ischiensis_contig1:6966302..69666651695739723.2018416-CDS-S-ischiensis_contig1:6966302..6966665Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6966303..6966665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1007.1

>prot_S-ischiensis_contig1.1007.1 ID=prot_S-ischiensis_contig1.1007.1|Name=mRNA_S-ischiensis_contig1.1007.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=238bp
MRYPGGGPLGRKRCRPTVDRRQGAAYRRPYTSRSKPSWADPFEKNEASPE
AFLCSMLAERGYPTAKLSSLGAGYMRAPTAKQLTDYASNLSGLIRSGDLA
GLQKAVQSGRKMDACNKFGESVVHLACRKGDPELLRFLLQNGGSLMCSDD
LGRLPLHDVLWASRPRFELLLLHLNKRPELLLTADNRGCTPLRYIKRQNW
DAWKGFLATVKDTYWPRLPVAAPTATAVAAAAKGCSS*
back to top

mRNA from alignment at S-ischiensis_contig1:6965488..6967276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1007.1 ID=mRNA_S-ischiensis_contig1.1007.1|Name=mRNA_S-ischiensis_contig1.1007.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1789bp|location=Sequence derived from alignment at S-ischiensis_contig1:6965488..6967276+ (Schizocladia ischiensis KU_0333)
AGGCGGTCCAACAAGCATAGGTGCGGGGCGCGCGGCCCGGCGCTCTGACA AGGCATTCAACAAAAAGAAAAACGCTTGGGCAAGAGTTAAGCAAAAGCCT GTTCCGGGCTAGCCTTGTCATTCAGTTTCTGAACAGGACCCAATAGTTGT CACGGCAATGGATCAACGCCTCGTTGTCTGGTTGGGTGACACGGGGCTCT TATCGTGCCGCGTGGCCGTTTGTCAACACGGCCGTGGCACCTTGGCCTTG CCCACCCCAGGTGGCCTGTTCCCGGCCACTCGGGAGCGAAGGTGGGGCCA TGAGGTACCCGGGAGGCGGGCCGCTTGGCCGAAAACGGTGCCGCCCTACC GTAGACCGTCGACAGGGGGCAGCCTATCGACGCCCTTATACCAGCCGGAG CAAGCCGAGCTGGGCGGACCCGTTTGAAAAGAATGAGGCCTCCCCCGAAG CCTTCTTGTGCAGTATGTTGGCCGAAAGGGGGTATCCGACGGCCAAGTTG TCCTCTCTGGGCGCAGGCTATATGCGAGCACCCACGGCGAAGCAGCTGAC GGACTACGCGAGCAACCTGAGCGGACTCATCCGCAGCGGGGACTTGGCCG GGCTCCAGAAGGCCGTCCAAAGTGGACGGAAGATGGACGCTTGCAACAAA GTGAGAGCGAGGAAAGCTTTTAATATGGCCCACGTCGCTCGGCGTTGGAC GCTTGACGCGGAGAACAGCCGGTATCTTTTGGAACACAGCTCCACTAGTT GGTTGGATGAGCAGCGGAAGTTAACCTTTGCCCTTCCCCCTTGTTCCCCC TTGGTGTGCGCGCAGTTCGGGGAGTCTGTCGTGCACTTGGCGTGCCGGAA GGGCGACCCGGAGCTGCTCCGATTCCTGCTGCAGAACGGGGGCTCCCTCA TGTGCTCGGACGACCTCGGCCGCCTGCCCCTGCACGACGTGCTGTGGGCG TCCCGCCCGCGGTTTGAGCTCTTGCTGCTCCACCTGAACAAGCGGCCGGA GCTCCTGCTCACCGCGGACAACCGCGGGTGCACCCCCTTGCGCTACATCA AGAGACAGAACTGGGACGCCTGGAAGGGATTCCTCGCCACCGTCAAGGAC ACCTACTGGCCACGTCTGCCTGTGGCGGCGCCGACGGCGACGGCGGTAGC GGCAGCAGCCAAGGGCTGCTCCTCGTGAGGCGCGACTTGCTTGGCCGCCT CGGCGGCCCCGTGAGCATGTCCTCAAGGACCGTATGAAGTGCCTGCGTGG CTGGACGGGGTATGCATGTCTCGCGGGAAAAGCGCGGGGCCAGAGACTGG CTTTCGGCGCCCGCCTCTGCGCGCTCTCGGTGTCCGACGTTGTTTGTTGG CTGATTTTTTTGTCTGTCCTGTCTGTCTTGTGTGGCATGTGTGGCGCGCA AACGTGCTCGAGGCTATAGAGTACTCGTACCATGTGGGTTTTGGGCGCGC TGGAGTGCTTTGGAAGCACAGCACAGTATGCAGCGGTGAAGTACATACAC GCCTTCCGGGCTCCTTGTACAGTACCGTACGGTAAAAATTTTGGCATGTT TATTCTTTGATGTTTTTGGGCACAGCGCTGGCGGCCGAATAATCGCCCGA TTGTTGTGCCCCCGGTTCCTGGCGCCCGGCCGCCTTGGCCCGGGCCCGTG GGGAAGGAAGGAAGGCCTTGCAGTTTTGTTCCGTGGCCGACGCGCGCGTC TTTCTGGGCAGGCCGGGGCGTCCGAGACTGGATGAGATGTTTTATTAAAA ACAAAAGCGCGTACAGTCTTAATGCAATCGTGGTGGCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:6965488..6967276+

>mRNA_S-ischiensis_contig1.1007.1 ID=mRNA_S-ischiensis_contig1.1007.1|Name=mRNA_S-ischiensis_contig1.1007.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1428bp|location=Sequence derived from alignment at S-ischiensis_contig1:6965488..6967276+ (Schizocladia ischiensis KU_0333)
ATGAGGTACCCGGGAGGCGGGCCGCTTGGCCGAAAACGGTGCCGCCCTAC
CGTAGACCGTCGACAGGGGGCAGCCTATCGACGCCCTTATACCAGCCGGA
GCAAGCCGAGCTGGGCGGACCCGTTTGAAAAGAATGAGGCCTCCCCCGAA
GCCTTCTTGTGCAGTATGTTGGCCGAAAGGGGGTATCCGACGGCCAAGTT
GTCCTCTCTGGGCGCAGGCTATATGCGAGCACCCACGGCGAAGCAGCTGA
CGGACTACGCGAGCAACCTGAGCGGACTCATCCGCAGCGGGGACTTGGCC
GGGCTCCAGAAGGCCGTCCAAAGTGGACGGAAGATGGACGCTTGCAACAA
AATGAGGTACCCGGGAGGCGGGCCGCTTGGCCGAAAACGGTGCCGCCCTA
CCGTAGACCGTCGACAGGGGGCAGCCTATCGACGCCCTTATACCAGCCGG
AGCAAGCCGAGCTGGGCGGACCCGTTTGAAAAGAATGAGGCCTCCCCCGA
AGCCTTCTTGTGCAGTATGTTGGCCGAAAGGGGGTATCCGACGGCCAAGT
TGTCCTCTCTGGGCGCAGGCTATATGCGAGCACCCACGGCGAAGCAGCTG
ACGGACTACGCGAGCAACCTGAGCGGACTCATCCGCAGCGGGGACTTGGC
CGGGCTCCAGAAGGCCGTCCAAAGTGGACGGAAGATGGACGCTTGCAACA
AATTCGGGGAGTCTGTCGTGCACTTGGCGTGCCGGAAGGGCGACCCGGAG
CTGCTCCGATTCCTGCTGCAGAACGGGGGCTCCCTCATGTGCTCGGACGA
CCTCGGCCGCCTGCCCCTGCACGACGTGCTGTGGGCGTCCCGCCCGCGGT
TTGAGCTCTTGCTGCTCCACCTGAACAAGCGGCCGGAGCTCCTGCTCACC
GCGGACAACCGCGGGTGCACCCCCTTGCGCTACATCAAGAGACAGAACTG
GGACGCCTGGAAGGGATTCCTCGCCACCGTCAAGGACACCTACTGGCCAC
GTCTGCCTGTGGCGGCGCCGACGGCGACGGCGGTAGCGGCAGCAGCCAAG
GGCTGCTCCTCGTGATTCGGGGAGTCTGTCGTGCACTTGGCGTGCCGGAA
GGGCGACCCGGAGCTGCTCCGATTCCTGCTGCAGAACGGGGGCTCCCTCA
TGTGCTCGGACGACCTCGGCCGCCTGCCCCTGCACGACGTGCTGTGGGCG
TCCCGCCCGCGGTTTGAGCTCTTGCTGCTCCACCTGAACAAGCGGCCGGA
GCTCCTGCTCACCGCGGACAACCGCGGGTGCACCCCCTTGCGCTACATCA
AGAGACAGAACTGGGACGCCTGGAAGGGATTCCTCGCCACCGTCAAGGAC
ACCTACTGGCCACGTCTGCCTGTGGCGGCGCCGACGGCGACGGCGGTAGC
GGCAGCAGCCAAGGGCTGCTCCTCGTGA
back to top