mRNA_S-dermatodea_contig10710.491.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10710.491.1
Unique NamemRNA_S-dermatodea_contig10710.491.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.320e-49
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  842 KSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            KSVEERLPKI+ FH+RFR+LL EP R  A   +  S  +  A+   RDPKYG+FQL ERWNVDQV L  V G  ST    G  R+ ISQPF GLEKRQCT+Q   GPG + +  ++IFRG G RIS VE AAY K V VFFQ+ AWAD +FC  WAKR YR+GL+   G
Sbjct:  318 KSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRG 486          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 4.680e-49
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  842 KSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            KSVEERLPKI+ FH+RFR+LL EP R  A   +  S  +  A+   RDPKYG+FQL ERWNVDQV L  V G  ST    G  R+ ISQPF GLEKRQCT+Q   GPG + +  ++IFRG G RIS VE AAY K V VFFQ+ AWAD +FC  WAKR YR+GL+   G
Sbjct:  250 KSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRG 418          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5KH13_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH13_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 5.450e-49
Identity = 95/169 (56.21%), Postives = 114/169 (67.46%), Query Frame = 2
Query:  842 KSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            KSVEERLPKI+ FH+RFR+LL EP R  A   +  S  +  A+   RDPKYG+FQL ERWNVDQV L  V G  ST    G  R+ +SQPF GL KR+CT+Q   GPG + +  ++IFRG G RIS VE AAY K V VFFQ+ AWAD +FC  WAKR YR+GL+   G
Sbjct:   88 KSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAVSQPFAGLGKRKCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRG 256          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.400e-48
Identity = 97/169 (57.40%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  842 KSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            KSVEERLPKI+ FH+RFR+LL EP R  A   +  S  +  A+   RDPKYG+FQL ERWNVDQV L  V G  ST    G  R+ ISQPF GLEKRQCT+Q   GPG + +   +I RG G RIS VE AAY K V VFFQ+ AWAD +FC  WAKR YR+GL+   G
Sbjct:  278 KSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRILVILRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRG 446          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 2.850e-48
Identity = 98/169 (57.99%), Postives = 115/169 (68.05%), Query Frame = 2
Query:  842 KSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            KSVEERLPKI+ FH+RFR+LL EP R  A   +  S  +  A+   RDPKYG+FQL ERWNVDQV L  V G  ST    G  R+ ISQPF GLEKRQCT+Q   GPG + +  ++IFRG G RIS VE AAY K V VFFQ+ AWAD +FC  WAKR YR+GL+   G
Sbjct:  432 KSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRG 600          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.130e-47
Identity = 135/334 (40.42%), Postives = 168/334 (50.30%), Query Frame = 2
Query:  359 LAASRRSCTSREKASAIMQLRELESWSLEAWEWHGMSPLQYSSLKTGVPNANTSKWQNERRTFRQGGDKG-GDEWPDEKDAKQRLVSEGGGGVVSDVPASTPEEEAQGIR--RCGCRSHSANCF*RTGRTMRERAGFRGLSSLGQTSGPISTTCLVGEIATQTTKSVEERLPKIREFHKRFRQLLNEPRR-EEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            LA+ R S   REK S + QLRELES + E      ++PL Y S KTG+  AN SKWQ E     +   K    +  D K   +R   E    + +       ++     R      R   A  +    R    RA +R              +  +   +    KS EERLPKI  + KR+R+LL EPRR     V      P  A+       K+GRF   ER N DQV    V GQ  +    G +R+ I QPFPGLEKRQCTVQP  GPGG+V+ CA+IFRG G  ISKVE AAYDK V VFFQ  AWAD  FC  W +RC+R  L+AA+G
Sbjct: 1327 LASPRGSYDPREKLSVVEQLRELESRAQEVRAHFNLTPLGYLSNKTGIAVANISKWQREEEKLLEVAAKSVKKKLFDTKSRPKRWFPEAEQALYTMYRERRKKKVRVSTRWLTVTFRKLLAEKYPEDPRAKTFRASYRWAQKWAHRH-----SLSMRRKSNGKNKSSEERLPKINAWLKRYRELLREPRRCGGELVPWPQQVPQEASGDLQAHHKWGRFLPDERLNTDQVPTGFVNGQVDSWEQTGARRVHIMQPFPGLEKRQCTVQPTFGPGGKVMKCAIIFRGKGTGISKVEKAAYDKRVDVFFQPKAWADDNFCMQWLERCFRPSLMAASG 1655          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5JWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ4_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.170e-46
Identity = 127/329 (38.60%), Postives = 166/329 (50.46%), Query Frame = 2
Query:  362 AASRRSCTSREKASAIMQLRELESWSLEAWEWHGMSPLQYSSLKTGVPNANTSKWQNERRTFRQGGDKGGDEWPDEKDAKQRLVSEGGGGVVSDVPASTPEEEAQGIRRCGCRSHSANCF*RTGRTMRERAGFRGLSSLGQTSGPISTTCLVGEIATQTTKSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            A  RR    R KA+A+ QLR LE  +   W+    +PLQY      V  +N  KW  + +          ++ P  K   ++  +E        +     E   + ++       +A  F  + R  R+ A    LS   +T+                 K+VEERLPKI+ FH+ FR+LL EP R  A      S     A+R  R PKYG+F L ERWNVDQV LA V G   T  +R  KR+ ISQPFPGLEKRQCTV    GPG   +  ++IFRG+G RIS VE AAY + V VFFQ+ AWAD + C  WAKR Y +GL+   G
Sbjct:  121 APKRRRYDYRFKANAVSQLRILEGNAAYLWKKEERTPLQYLEDGLKVHYSNIVKWTKDEKAIVAAAADDANKSPLAKQQPKQWFAE----AQKRLYKMFVERRKRKLKMYPGDQRAA-AFSASFRWARKWAKRHNLSKRRRTN--------------LKNKTVEERLPKIQRFHRLFRKLLQEPVRYRAPDELDLSAITTFAERESRVPKYGQFLLWERWNVDQVPLAFVNGLLDTWEERVAKRVAISQPFPGLEKRQCTVLVIFGPGETTLRISVIFRGMGKRISPVEKAAYHEDVDVFFQENAWADQKICMEWAKRSYLEGLMRGRG 430          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5K4R4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R4_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.060e-44
Identity = 94/170 (55.29%), Postives = 114/170 (67.06%), Query Frame = 2
Query:  839 TKSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            +KSV+ERLPKI+ FH+RFR+LL EP R  A   +  S  +  A+   RDPKYG+FQL ERWNVDQV L  V G  ST    G  R+ ISQPF GLEKR+CT+Q   GPG + +  ++IFRG G RIS VE AAY K V VFFQ+ A A  +FC  WAKR YR+GL+   G
Sbjct:  718 SKSVKERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDPKYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRKCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENALAHQKFCMEWAKRSYREGLIRGRG 887          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5JV77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV77_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 4.440e-44
Identity = 127/335 (37.91%), Postives = 166/335 (49.55%), Query Frame = 2
Query:  362 AASRRSCTSREKASAIMQLRELESWSLEAWEWHGMSPLQYSSLKTGVPNANTSKWQNERRTFRQGGDKGGDEWPDEKDAKQRLVSEGGGGVVSDVPASTPEEEAQGIRRCGCRSHSANCF*RTGRTMRERAGFRGLSSLGQTSGPISTTCLVGEI------ATQTTKSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLLAANG 1348
            A  RR    R KA A+ QLR  +  + + W+    +PLQ+   +  +P +N  KW                     K+ K+ +     G   S +    P+    G  +   R +        G   R +   + L +L  T   I+   LV E+      A  +  S   RLPKI+ FH+ FR+LL EP R  A   +  S     A+R  R PKYG+FQL ERWNVDQV+LA V G   T   RG  R+ ISQPF GLEKRQCT+Q   GPG + +   +IFRG G RIS VE AAY + V VFFQ  AWAD +FC   AKR YR+GL+   G
Sbjct:  273 APKRRRYDFRFKAHAVNQLRIFQDNAEDLWKEEQRTPLQFLEGRLKIPYSNIVKWA--------------------KNEKELVAVAADGVKKSLLAKQQPQRSFPGAEK---RLYK-------GFVERRKRKLK-LPTLWLT---ITFRKLVREMYPGDQRAASSRASFRRRLPKIQRFHRLFRKLLQEPVRYRAPDESDVSAVTTVAERESRVPKYGQFQLWERWNVDQVSLAFVNGLLETWDKRGALRVAISQPFAGLEKRQCTMQVTFGPGEKTMRILVIFRGTGKRISPVEKAAYHEDVDVFFQDNAWADQKFCMERAKRSYREGLMRGRG 573          
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Match: A0A6H5JXZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ1_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 5.730e-43
Identity = 91/165 (55.15%), Postives = 109/165 (66.06%), Query Frame = 2
Query:  842 KSVEERLPKIREFHKRFRQLLNEPRREEAAVTASASPPAVAAQRPVRDPKYGRFQLAERWNVDQVALALVTGQGSTLADRGNKRIVISQPFPGLEKRQCTVQPCIGPGGRVILCALIFRGLGLRISKVELAAYDKHVVVFFQKCAWADVEFCTAWAKRCYRKGLL 1336
            K VEERLPKI+ FH+ FR LL EP R  A   +  S     A+R  R PK G+FQL ERWNVDQV LA V G   T  +RG   + ISQPFPGLEKRQ TVQ  +GPG + +  ++IFRG G RIS VE AAY K V +FF++ AW D +FC  WAKR YR+ L+
Sbjct:  268 KFVEERLPKIQRFHRLFRMLLQEPVRYRAPDESDVSAITTVAERESRVPKNGQFQLWERWNVDQVPLAFVNGLLDTWEERGANDVAISQPFPGLEKRQFTVQVILGPGEKTLRISVIFRGTGKRISPVEKAAYHKDVDLFFEENAWTDQKFCMEWAKRSYRESLM 432          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10710.491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDV1_9PHAE4.320e-4957.99C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JKG3_9PHAE4.680e-4957.99DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KH13_9PHAE5.450e-4956.21DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KZ92_9PHAE1.400e-4857.40DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JFX9_9PHAE2.850e-4857.99C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5JH58_9PHAE1.130e-4740.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWQ4_9PHAE2.170e-4638.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4R4_9PHAE1.060e-4455.29C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JV77_9PHAE4.440e-4437.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ1_9PHAE5.730e-4355.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10710contigS-dermatodea_contig10710:5956..7339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-00_006820.1
Exons2
Model size1348
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10710.491.1prot_S-dermatodea_contig10710.491.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10710 6010..6333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.2677932-UTR-S-dermatodea_contig10710:5955..60091622924170.2677932-UTR-S-dermatodea_contig10710:5955..6009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10710 5956..6009 +
1694079065.7520761-UTR-S-dermatodea_contig10710:5955..60091694079065.7520761-UTR-S-dermatodea_contig10710:5955..6009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10710 5956..6009 +
1622924170.2883193-UTR-S-dermatodea_contig10710:6333..68741622924170.2883193-UTR-S-dermatodea_contig10710:6333..6874Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10710 6334..6874 +
1694079065.7684853-UTR-S-dermatodea_contig10710:6333..68741694079065.7684853-UTR-S-dermatodea_contig10710:6333..6874Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10710 6334..6874 +
1622924170.297754-UTR-S-dermatodea_contig10710:6910..73391622924170.297754-UTR-S-dermatodea_contig10710:6910..7339Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10710 6911..7339 +
1694079065.7764416-UTR-S-dermatodea_contig10710:6910..73391694079065.7764416-UTR-S-dermatodea_contig10710:6910..7339Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10710 6911..7339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.2790666-CDS-S-dermatodea_contig10710:6009..63331622924170.2790666-CDS-S-dermatodea_contig10710:6009..6333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10710 6010..6333 +
1694079065.7604673-CDS-S-dermatodea_contig10710:6009..63331694079065.7604673-CDS-S-dermatodea_contig10710:6009..6333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10710 6010..6333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10710.491.1

>prot_S-dermatodea_contig10710.491.1 ID=prot_S-dermatodea_contig10710.491.1|Name=mRNA_S-dermatodea_contig10710.491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MQDLGVHQRVHHPNPDRSAGVRPRRALMSSGVTTVPLPWDGNPIGRCWKV
RFHHKTTGVDPTRRVVGTVAFELQPMSEGDQGIIADDFTPEPLKQGPGAC
GASCFPS*
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mRNA from alignment at S-dermatodea_contig10710:5956..7339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10710.491.1 ID=mRNA_S-dermatodea_contig10710.491.1|Name=mRNA_S-dermatodea_contig10710.491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1384bp|location=Sequence derived from alignment at S-dermatodea_contig10710:5956..7339+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCTTCTTCGCCGAGTTTGCAGTGCCCCCACTGCACGCGCCGCTTCCA CAACATGCAAGACCTCGGGGTCCACCAAAGAGTTCACCACCCTAACCCTG ATCGGAGCGCTGGGGTGAGGCCGAGGCGCGCCCTGATGAGCAGTGGCGTC ACAACCGTCCCATTGCCATGGGATGGTAACCCCATTGGGCGATGCTGGAA GGTGAGGTTTCACCACAAGACCACTGGCGTGGACCCCACGCGCCGCGTCG TTGGCACTGTTGCGTTCGAGCTTCAGCCGATGTCCGAGGGTGACCAGGGC ATCATCGCCGACGACTTCACACCGGAGCCTCTGAAGCAAGGGCCCGGCGC TTGTGGAGCTAGCTGCTTCCCGTCGTAGTTGTACTTCCCGGGAGAAGGCC AGCGCCATCATGCAGCTGCGAGAGCTGGAGAGTTGGTCGCTGGAGGCGTG GGAGTGGCACGGCATGTCGCCGCTTCAGTATTCGTCGCTTAAGACTGGAG TGCCCAACGCCAACACCAGCAAGTGGCAGAACGAAAGAAGAACGTTTCGT CAAGGAGGCGACAAAGGAGGTGACGAGTGGCCTGATGAAAAAGACGCGAA GCAACGGCTGGTTTCAGAAGGAGGAGGCGGAGTTGTATCGGATGTTCCAG CATCGACGCCAGAAGAAGAAGCTCAAGGTATTCGACGCTGTGGGTGTCGG TCACATTCCGCAAACTGCTTCTGAAGAACCGGCCGAACGATGCGAGAGCG CGCGGGCTTTCGCGGGCTCTCGTCGCTGGGCCAAACAAGTGGGCCAATAA GCACAACGTGCCTCGTAGGAGAAATAGCAACTCAAACAACAAAGTCTGTG GAGGAACGCCTGCCGAAAATCCGGGAGTTCCACAAGAGGTTTCGTCAGTT GCTCAACGAACCAAGGCGTGTGGCAGGGCAGGTTGTAGGAGCAGAGCCGC AACAGGAGGAGGCGGCTGTCACCGCATCCGCGTCGCCACCGGCCGTTGCC GCACAGCGCCCCGTGAGAGACCCCAAATACGGGCGCTTCCAACTGGCGGA GCGGTGGAACGTCGATCAGGTTGCGCTCGCGTTGGTGACCGGCCAGGGAT CTACGTTGGCTGATAGAGGCAACAAGCGCATCGTCATTTCGCAACCCTTT CCGGGTTTGGAGAAGCGCCAGTGCACGGTTCAACCGTGTATTGGACCAGG GGGGAGAGTGATATTGTGCGCCCTCATATTCCGGGGTTTAGGCTTGCGCA TCTCAAAGGTGGAGCTGGCGGCGTACGACAAGCATGTGGTTGTGTTCTTC CAGAAGTGCGCGTGGGCGGATGTAGAGTTCTGTACGGCGTGGGCTAAGCG CTGCTACCGCAAGGGCCTATTGGCCGCGAACGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10710:5956..7339+

>mRNA_S-dermatodea_contig10710.491.1 ID=mRNA_S-dermatodea_contig10710.491.1|Name=mRNA_S-dermatodea_contig10710.491.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig10710:5956..7339+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAAGACCTCGGGGTCCACCAAAGAGTTCACCACCCTAACCCTGATCG
GAGCGCTGGGGTGAGGCCGAGGCGCGCCCTGATGAGCAGTGGCGTCACAA
CCGTCCCATTGCCATGGGATGGTAACCCCATTGGGCGATGCTGGAAGGTG
AGGTTTCACCACAAGACCACTGGCGTGGACCCCACGCGCCGCGTCGTTGG
CACTGTTGCGTTCGAGCTTCAGCCGATGTCCGAGGGTGACCAGGGCATCA
TCGCCGACGACTTCACACCGGAGCCTCTGAAGCAAGGGCCCGGCGCTTGT
GGAGCTAGCTGCTTCCCGTCGTAGATGCAAGACCTCGGGGTCCACCAAAG
AGTTCACCACCCTAACCCTGATCGGAGCGCTGGGGTGAGGCCGAGGCGCG
CCCTGATGAGCAGTGGCGTCACAACCGTCCCATTGCCATGGGATGGTAAC
CCCATTGGGCGATGCTGGAAGGTGAGGTTTCACCACAAGACCACTGGCGT
GGACCCCACGCGCCGCGTCGTTGGCACTGTTGCGTTCGAGCTTCAGCCGA
TGTCCGAGGGTGACCAGGGCATCATCGCCGACGACTTCACACCGGAGCCT
CTGAAGCAAGGGCCCGGCGCTTGTGGAGCTAGCTGCTTCCCGTCGTAG
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