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Homology
BLAST of mRNA_S-dermatodea_contig10060.46.1 vs. uniprot
Match: D7FUI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI3_ECTSI) HSP 1 Score: 154 bits (390), Expect = 3.250e-40 Identity = 105/193 (54.40%), Postives = 123/193 (63.73%), Query Frame = 3
Query: 75 MDDSDDTP--DEELYASLRARLEELEKRV------PSREVQSES---GTETPRARE-FTIPGESRAPPPQSPEERKRSIALLTVQSVGVISIALSFGTAALYWLAGEYFVHLGPRDFPGSLSNRGKGLSS--IERTVEGAE-EGEAPAAPP--RRTMGGSTTREAFDFEGFPDAA----------RTVVPPDF 572
MD SDDT D E+YASLR RLEELEK+V P +VQ + + R RE FTIP ES PE+++RS ALLT+QSVGVIS ALSFGT ALYWLAG FVHLGPR++PGS+S+RG ++ IER G + G A AP RR MGGS+TREAF FEGFPD + VVPPDF
Sbjct: 1 MDPSDDTSEGDAEMYASLRKRLEELEKQVGTSAPAPQEQVQEPAVAANNKGAREREWFTIPKES-------PEDKRRSRALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSMSSRGGASTAPGIERIAAGEDGNGGAQQAPQTKRRAMGGSSTREAFQFEGFPDVGGSGGGSGGVGKGVVPPDF 186
BLAST of mRNA_S-dermatodea_contig10060.46.1 vs. uniprot
Match: A0A6H5KW30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW30_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.150e-39 Identity = 107/205 (52.20%), Postives = 126/205 (61.46%), Query Frame = 3
Query: 48 AGDGE-GGFNMDDSDDTP--DEELYASLRARLEELEKRVPSRE--VQSESGTETP--------RARE-FTIPGESRAPPPQSPEERKRSIALLTVQSVGVISIALSFGTAALYWLAGEYFVHLGPRDFPGSLSNRGKGLSS--IERTVEGAEEGEAPAAPPR---RTMGGSTTREAFDFEGFPDAA-----------RTVVPPDF 572
AG+G G NMD SDDT D E+YASLR RLEELE RV + Q E G E R RE FTIP E+ PE+++RS+ALLT+QSVGVIS ALSFGT ALYWLAG FVHLGPR++PGS+S+RG ++ ER V G +E P+ R MGGS+TREAF FEGFPD + VVPPDF
Sbjct: 67 AGEGXXGSANMDPSDDTSEGDAEMYASLRKRLEELENRVETSAPAAQEEQGQEPAVTANNRGAREREWFTIPKEA-------PEDKRRSLALLTIQSVGVISAALSFGTLALYWLAGAAFVHLGPREYPGSVSSRGSAGTAPGFERIVVGEDENGGAQQVPQTQGRAMGGSSTREAFQFEGFPDVGGGGSXXXXXXXKGVVPPDF 264
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_003820.1 |
| Exons | 2 |
| Model size | 1849 |
| Cds size | 501 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10060.46.1 >prot_S-dermatodea_contig10060.46.1 ID=prot_S-dermatodea_contig10060.46.1|Name=mRNA_S-dermatodea_contig10060.46.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=167bp
MDDSDDTPDEELYASLRARLEELEKRVPSREVQSESGTETPRAREFTIPG ESRAPPPQSPEERKRSIALLTVQSVGVISIALSFGTAALYWLAGEYFVHL GPRDFPGSLSNRGKGLSSIERTVEGAEEGEAPAAPPRRTMGGSTTREAFD FEGFPDAARTVVPPDF* back to topmRNA from alignment at S-dermatodea_contig10060:841..8230+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10060.46.1 ID=mRNA_S-dermatodea_contig10060.46.1|Name=mRNA_S-dermatodea_contig10060.46.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7390bp|location=Sequence derived from alignment at S-dermatodea_contig10060:841..8230+ (Saccorhiza dermatodea SderLu1190fm monoicous) GCTGCATCAGCAATCGGCGTGGCAGGGGCGTGGCGAGGGGATCCAGCGCG
GGGGATGGTGAGGGTGGCTTTAACATGGACGACTCTGACGACACACCGGA
CGAGGAGCTGTACGCCTCGCTCCGTGCTCGGCTGGAGGAGCTGGAGAAGA
GGGTTCCCTCGAGGGAGGTTCAATCAGAGTCAGGCACTGAAACGTGAGAG
AGACAAGAGATGGGAGGATTGAGATACACTGCTGTGCGTAGTGCCTGTGT
GGGTCCGATGCTGTGTTCAGGTGCGATTGGCGATGAAGAGGTGGATAGAG
GGGAGCGTTCCGGGTGGTGTTGCTTGAGGTGGTGGTGGTGGTGGTGGCAG
GTGCGCCTCTCTGGCACGTGCCCTCGACCCTGCATGTGACGTGTTTCTGG
GAAAAGGGCGCAGGCGCTGCGCGCGAAAAAAACAATTGCGCCGCGCTTTT
TGGTTTCTGTCGAGCATGCAGCATGCATCGTTCCTTTCCCGATTTGACCC
TGTGCCCAAAGGTGACAAACATGTGCAGTATGTCTCTCATGTGCACGCGT
TGCCAGTGCAATGCATCGCCAGCCGACTGCTGGGTCAACGCAGCGAGACG
CCATCACCACGTGGCACGGCTCTATAAAAAATAACATATAATATGATACA
ATACTTGTATGTATCATACTTGTACAGGAATTTTTGAAGGCCGAAGTAAA
GTACGCGAATTTCCGCGCAATAATATTTTCACTTGCTCGCAGAGTCAGAC
ACAAACACGCGAGCTTTTATTTTGTCGCCATCGTACTTGTAGCAGTTTTT
TCGCCCTGTTCGCGAGTACAGAGAGCCGATACATTTGGTGGGGGAGGGGG
ACGGGGAGGGGCGGGGGGAGGGTTCTCACAGCGATGCACACCACACGGGC
GTAGCCGTGGCTCCCTATTAATACTACAAGTATGATGGACACCTATTGAT
ACTATATATGTAAATTATTGGAAACTGATTCCGTAAATGTTGTTCGCTAA
AAACCAGTGAGTTCGGGTCCACCGCTCGATTGTTGGGTGAAGTGGAGGAT
GTCTCAGGGCCCCCCGCGCCCCCCGCCGACCCGCCCGCCGAGATGCCTCA
GCAATGGCGTCATGTGTGTGTGTTCTCGATTGCACGGCGATCGTCGTACA
CTAAACTATTAGATTGTATGATAGAGGCATGTGTTTTAGCTCGGGGCCTG
GACAGGTTTGCCGGGGGTCAAGGGCGGCGAATCCCGGCCGGGGTTAAAGA
CAATCACCTAATAAAAGCCTTGATACCCACCGAACAGGTTATCTTTTGTA
TACATCCTTGCGCACCCTTGCCCCCCAGCAAGAAAGTTGTATGCTTACAA
GGTCTCTTTGGCTGACGTCGCAACGCTCATCGAGCGCCATCGCCAAGGCC
AACGATTTTTTAAGACGCCAGACGATAGGCATGGGTTTCAATATATACTG
GGAGGTGGAACGTCGTGAAGAGGGTTGCGGTAGATCATGATGGCGGTATG
AATAAGCCTTTATTGTGTAATTTTATCGCGTTGTATTTAGTCGTTTACAA
ATGATGAACACATTCTCCCAGCAGGACAAGAGTATCTATTTCCGTAATGG
ACTACCGGGTTTCGGGCGAAGCCAAGCACGTTCGGCAGAGTTAAATAAAA
AGTAGACGGAAGTACACTGCTGTAACTAGCATTAGACCGCACGACTCGTG
GCAAGACTATGATACAGACGTGAAGCGAGGTAAAGCCAGCACAGAGACGT
ATATAGAACACAGTGAAGTAGAAATGCAGAGGGAAAAATATGACGGCAGT
GTCGAAGGTTTCACTGGTTGCGACCCACACACGACATAGGACATAATCAA
ACTCCAGCGAAACAATTTATTAATATTATTTTAGTTGTGTCTAAAGGGGT
AAGGGTCACAACGAGGTGGGCGCGTCGGGGGCGGGAAGTGGAGGTCTCGC
AGCGCTCAAGAGCAGCGCTCGAGTGAGGGTTAAAAAAGTGTATCTCAGGC
GCCTATAGCCTATAGCCTATAATATTGATATTAATATTAATATTAATATT
AATATTAATAGAGCGAACTATAAACTCCTGCCAACGTATTAATACATAGT
ATTATGAATATTAATAGGATACTTGTACAGTCAACGTAGAACTGCGGGGA
ACCAAGTATGGATAAATGGTGTCGAAAGGTACGGGCGAGATAGGGACCCA
TCAACACGATATACAGACAGTATATATTGATACTATAAATAGGTAAATGG
AACTGGAACGTAAAGGCGGGAACAATGAAAGCACCAACGAAATGAGATCG
GCGCGCAGATCGCTTGGAGCAATGAGATGGCAGATGGCAGATGGCGCATC
GGGGTTCGAGAAATGGAGGCCCCACAGCCCTGGAGACAGGGGGTGAAAAA
GTTCTCTCAGGCGCCGAGAGCATGTCGGCGCCATGGTTGACGGAGCGCTG
TGAGGAAAAATAAGATAAATCGTTGAAATATTTATTACAGATACACACAC
GCACTCGTGTTGCAGATCACGGGGTTATGACGTCGAAAAACGAAAAATTA
CCAATCCAAGCAAGCGAAACCTCCAGGCTTTATTTATATTTGCCCGGAGA
TGACCGGAGCGGCGCAGCCCCTTCGCTTAGCAGAGGTGTCTTGGTATGGC
CATGATCGCGAAAATCTACTGCTGTACTGAACCTTGGGCCACCTTCGTGG
GTGTCCCGCGACGGCTGAAGTCATTGAGGAGCTCGCTGGGTGATTTTCAT
GGTTGTTCGGATCGAAACCAGAGAGCAATCGATGCGGAAGTAAATTTTGA
ACAACGGCGTCTTAGCTCCGCAAACCACCCCTGAGGCAACCCTGAGGTAC
TGACCTAAATGCGACCCGCCCAAACTGAGTTCGAAGCCAAATCGACTTTA
CGTCGGAAATCATGGATAGGACCGGTAGGTGAATAGGTTCCGCGAGGGGC
CAATTTAGGATTAAATGTGGTCGTCTCACAATCCAGCATTGTGCTCCGAG
ACTCCCAGGGAAAAGCCTGGAGCATCCCCGGGGTAGCCCCGGGGTAGACC
AAACCACTATGCACATTTTGGCACATTTTGGTTTGGCCACCTCAGGGCGC
GCGAGCGAAAAATTCTTGGTGAGGAGGGGTCTTCACACTGCTGCTGAGCC
ATGACCAACGTTTGGGCGCTCGGACAAGTCTGTATGGAGATATACTTGCA
CTGCCAGCACCAGCTACCATCAGGCTCGCGCAGCTCTGCCAGTTTCCTGT
TTTTTTTACACGAAACCAGCCGTTACAAAGCAGTTGGGTGGGCGTCCCCT
TGACTTCATTTCTTGTTGATTTTTTCCTAAGGAGGCGAACTTTGAAGTGA
CCCGCCCACTCTGGTTTCTGCACCGACTGCGATGGGAATGATCTTGCTAA
GCATGTCCTGAGCTATGGTGCACCCAGCGCACTTGGGGCCATTTTATGAT
CAAAGGTCTGTGCAGGCGAAAAGGGCGCCGAACAGTGGTGCGGAGCGGTT
TTCCCTAAGGAAATCTTGGGCGTATGACAGGATGTATAAAGAATAATGCC
CCCTTTCCTGTGGGAATTTTTTAGTGGAAAACCACGTCTGCAACACGGAT
GCACAGTAATCAGGGCCAAACATGCCAAACAGGTTATGATACCAAACACA
ATAAACCCAAAATCAATCTGCCTTACGATATCAGATCTGCGATCGATACG
GCCTGAAATGCCTCATCAAAAGCAAAGAAAATATTTCAAGGCGCTCCGGC
CAACGTAAAAAAAAAACGGACTTGAATACCTGTACGCGCACGGAATTCAG
TGGAAATTGAGTCCTGGTTGCTGCAACATTGGACTGTTAGTATTAATATA
GTTACCTCTTGGTTGACCAAGCAATATTACCCTGGAGGTTGTTTTACGAC
TACCCAATTTCCGAGTCTGCACATTGTCGGAGGGCAAATTAATAAATTAA
CATTATTATTAACACAGCAGTAGGTGTGTACCTCCGGAGTAAAATACAGT
TTTGAACCCCGTCCCCCGCCCAGAAAACGGCCGGGATAGGAGATGGAGAT
GGAGATGGAGATGCATGATCAAAACGCAGAAAAATGTACCTGGTACTGTG
GCCATCCTCAGACTACAACGACTACAACTGGCTGCAGCAGTATTAAAATA
CTACTATCATAGTACAGTATGTCCTCCGTCGGTTTGTTTTCACCCTTGTG
TGACAAAATTATTTCCCGAGGCTACTTCACACCGCCGTGGAAAACCTTGG
TTGGAAGACAACTTCTTGGCGCAGATTCTTCAGCTGCCGTGGCTCCTTCT
CTCTGAGACGCCTTTGTTTCCAAGAGCCAGATCGGGGATTGCCCTGTACA
CGATTTCTGCCCATTACCTGCGATTCCTTTGGCCACGTATTATACCTTTA
TTCTGGTACAAATTCGAACAAAATTCCAATCGCCGAAGAACGCTCCTCCA
GCCGCAGATGGGTCAATCCGTGGTATGTATCACGTTGCTCACCGCATCTC
TGATAGTGAGAGCCACGGCCGCCGAAGGGTTTCTTCATCAAGCAGTGCCC
TCATAAAAAAACACTCGCCGCGGAATGCAGCGACCTCGATCCCATGACTA
TTAATACTGCACTGTGTGTGGTTCGTTTGGCGTGGCTCATGTCAAGACCA
GGCTGTGATTGGCCCGCTCTACGTCAAAAGCGGCTTCTGATTGGCCCATG
CCAATACGGCAGAGCACAATCAACAGTCCCAGATATTGAGTCGTTGGTAC
ACCACCGATCATTGCGACTCTCGAATTTTTTTCTTCGGAGGTTTGTTTTT
CGTTTCCGCAGCAGTTACGATATGAGAGTAGCAGTACAATCCAGGAGTCT
TGGTCGAAGGATTGCAGATGTTGTCATGGGGCTCTTGATTAAGGCCAGAC
AGTTTTTTCAACTTTGGTTTTGTTAGTGAGGAATAACTTTCGTAGATTCG
GTCCACACTGTCACGGAGGCACATACAAGAAACTAGTAGTAGTATAATAG
TAGTAGTAGTAATCAGGACCTAGTTTGTGCTGACTGGCGTATTCAAGTCG
TGTGTGTGTGTGTGTGTGTGTGTTTGTTTTTGTTTTTTTTTCACGGTTTT
GCCCGAACACCTCGTAATATTTTATGAATGTGATAGTTTTTTGTTTTTTG
AATTTTTTTAGGCCGGAAGATCGAAAACGTTGCATCTAATATTTACGTTA
TGAAGGATTGATTTCTGGTTTGTGTTTTTGGGCGTATCATACTGTTTGTT
TGACACATTCGGTCCTGATTAGTACTACACTATACTATACTATACTATAC
TATTATATACTATAATACTGCCTTGTACAATTACCCTCTGCAATAGGAGC
TTTAATCCTCCGAACTTACATACGAAATTATATCAATAAATCGATTCTGT
CCCACAGCCAAGAAACACTCGCCCAAGTACAATATTTGACGAGAGATACC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTGCTTCGCTCCCCC
CCCCCCCTCCTCTTCCCTTCCCCCCCCCCCCCCCCGCCCCCCACCCCCCC
CCCCCGCGCCACGACCCCCCCCCCCCNNNNNNNNNNAAAAATATATAAAA
AAAACTTTTTCCCTCCACAACCCCAAACCCCCCCCCCCCAAAAAAAATTT
GTCAGAAAAACCCCCCCCCCCCCCCCCCCCCCATCCTTGTCGTCCGTTGC
GTGCTTGCCCTAACTGCCCTTTTCTTCTGCGCAGCCCTCGAGCACGGGAA
TTCACGATCCCCGGCGAAAGCAGGGCACCTCCACCACAGTCGCCCGAGGA
GCGGAAACGCTCCATCGCCTTGCTCACCGTCCAGAGCGTGGGCGTCATCT
CGATCGCGCTGTCCTTCGGAACCGCCGCGCTCTACTGGCTAGCCGGGGAG
TATTTCGTACACCTTGGCCCTCGCGATTTCCCCGGCTCGCTTTCGAATCG
AGGGAAGGGGTTATCGAGCATTGAGCGCACCGTGGAGGGCGCGGAGGAGG
GGGAAGCGCCGGCGGCGCCGCCTCGACGTACCATGGGAGGCAGCACCACC
AGGGAAGCGTTTGACTTCGAGGGGTTCCCGGATGCGGCGAGAACCGTCGT
GCCGCCGGACTTTTGAGAGGGTAAATGGCGGGGGCTCTTGGGCGTGGGGC
GTCTGTTGGAGCGCTTCTCGGGCCGACCACGAATATACTGCATGTATAGT
ATACCGCACCTGTTTTGTTCGCCCCTGGTATGTATTGGTATGATGCGAGA
AAATGCTCTCGATCTTAGGGACTGCTGCCATAGATACCAGGCCGGGCGGA
CGAGTTGCCCGGGGGAAGTCTTACGCTGCTTTCGGGAAACAAATAACTTT
CCAGCCGAGGTTGAATTTTCAGCTCAACGTGCGCATTTACTTATGAATAA
TGACGTGGGTACTGACTGCTGTTATCACTTTCGTACGGGCTCTCCGCGCG
AGACAGAATCGTGGCACGACGCTTATCGTGGGAACTTAGATGTCGGGTTC
AAAAATCGAAAAACGCCTCGTGTGTGCGTGTTGGGCTCAGCGGCCTGCTC
AATCGCGTCGACGCGTAGGAAAGCTGGGCGTCTGTCTCCCCCGGATCGGT
GGGAGCGTGCATCATATGAACCCCGCCTGACACCGTGCAGCTGAAAACAA
GCCGCGGAGAAGTGAAGCGATTTGGTCGCTACTGTCGTGTTGACATTCGA
TGTGCGGCCTTAGCAGCTCGGCAAAGGTTAGCATCTGCTACACGGTAGGT
ATGGTGGTCTTTTCGAGCAGAAGAGGGGCTAGAGGGTACGTGCGTGGTCC
GTGTTCTCGGCCGAGGTGGGCGGAATTCAAATTGTCCCGAGTTGGCTGTG
GTTGGGTGGGTGGTTAGAAGGGTGAAAGCATTTAGAGCTCGGGTCGGGAG
GCCCGATTGGGGCGGCTGGCGTCGGTCTTAGTCTGGCTATTGACAAGGAG
AAGCAGCTGAGCGTCTCACGTCGCTCCTTCCGAAGGCCCGGTAGCCGAGC
CGTGTCGGCAAGGGCGCTGAGCGTCCCTGCCTACCTTTCGGAAAAATGCT
ACTGTATGTAGTCGCCTACCTTTCGGAAAAATATTTTTTGACAATTAAGC
TTTTTTGTTGTTTATCCGTTCACGACTACTCCCCACCAACACCAACACCA
ACCCAAACCCTCACGCTTACTGTACACTTTTTGACCCGAAGGTTCCCATA
AGAATTGGGCAAATGCCCTGCTTGGGTGTAGGGTGGGTACGTGCAGAATC
AGTGTGGCCAGTTACGTTGCTTTAACGCTACTATTACTAACTACACTGTA
ATACCGTGTGGTAATGTTCTCATGGCAAACACCTGATCCGCCGGCGGGAC
ACTCAGGAGATGCCCATCCATTGCCGAAAATCGACTGCAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10060:841..8230+ >mRNA_S-dermatodea_contig10060.46.1 ID=mRNA_S-dermatodea_contig10060.46.1|Name=mRNA_S-dermatodea_contig10060.46.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at S-dermatodea_contig10060:841..8230+ (Saccorhiza dermatodea SderLu1190fm monoicous) ATGGACGACTCTGACGACACACCGGACGAGGAGCTGTACGCCTCGCTCCG TGCTCGGCTGGAGGAGCTGGAGAAGAGGGTTCCCTCGAGGGAGGTTCAAT CAGAGTCAGGCACTGAAACATGGACGACTCTGACGACACACCGGACGAGG AGCTGTACGCCTCGCTCCGTGCTCGGCTGGAGGAGCTGGAGAAGAGGGTT CCCTCGAGGGAGGTTCAATCAGAGTCAGGCACTGAAACCCCTCGAGCACG GGAATTCACGATCCCCGGCGAAAGCAGGGCACCTCCACCACAGTCGCCCG AGGAGCGGAAACGCTCCATCGCCTTGCTCACCGTCCAGAGCGTGGGCGTC ATCTCGATCGCGCTGTCCTTCGGAACCGCCGCGCTCTACTGGCTAGCCGG GGAGTATTTCGTACACCTTGGCCCTCGCGATTTCCCCGGCTCGCTTTCGA ATCGAGGGAAGGGGTTATCGAGCATTGAGCGCACCGTGGAGGGCGCGGAG GAGGGGGAAGCGCCGGCGGCGCCGCCTCGACGTACCATGGGAGGCAGCAC CACCAGGGAAGCGTTTGACTTCGAGGGGTTCCCGGATGCGGCGAGAACCG TCGTGCCGCCGGACTTTTGACCCTCGAGCACGGGAATTCACGATCCCCGG CGAAAGCAGGGCACCTCCACCACAGTCGCCCGAGGAGCGGAAACGCTCCA TCGCCTTGCTCACCGTCCAGAGCGTGGGCGTCATCTCGATCGCGCTGTCC TTCGGAACCGCCGCGCTCTACTGGCTAGCCGGGGAGTATTTCGTACACCT TGGCCCTCGCGATTTCCCCGGCTCGCTTTCGAATCGAGGGAAGGGGTTAT CGAGCATTGAGCGCACCGTGGAGGGCGCGGAGGAGGGGGAAGCGCCGGCG GCGCCGCCTCGACGTACCATGGGAGGCAGCACCACCAGGGAAGCGTTTGA CTTCGAGGGGTTCCCGGATGCGGCGAGAACCGTCGTGCCGCCGGACTTTT GA back to top
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