mRNA_S-dermatodea_contig10650.452.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10650.452.1
Unique NamemRNA_S-dermatodea_contig10650.452.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A6S7NPF6_LACSI (Histone H4 n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NPF6_LACSI)

HSP 1 Score: 209 bits (531), Expect = 2.480e-67
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   16 IQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            + PPLQ L+L    N  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   35 VSPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: W7TR01_9STRA (Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR01_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.740e-67
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:   49 HPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            HP +QIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   17 HPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A2J6KUW8_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6KUW8_LACSA)

HSP 1 Score: 209 bits (531), Expect = 4.050e-67
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   16 IQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            + PPLQ L+L    N  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   50 VSPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 169
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A453CQE5_AEGTS (Histone H4 n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CQE5_AEGTS)

HSP 1 Score: 207 bits (526), Expect = 1.380e-66
Identity = 110/124 (88.71%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:   16 IQPPLQH----LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            I P LQH    L+LP P    MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   32 IHPKLQHPHHSLLLPDP--STMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 153
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A5D2RII0_GOSTO (Histone H4 n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2RII0_GOSTO)

HSP 1 Score: 204 bits (519), Expect = 6.260e-66
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 1 
Query:    1 PPSHNIQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            PPS  +Q  +QHL      +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 PPSDTVQ--IQHLF----DSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 124
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS)

HSP 1 Score: 203 bits (516), Expect = 1.430e-65
Identity = 106/116 (91.38%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:   28 LQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            L H   P  P  IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 LLHFQTPSAP-PIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.740e-65
Identity = 104/113 (92.04%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:   37 LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
             +  + P   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 FVSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A0V0JCE2_SCHSO (Histone H4 (Fragment) n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0JCE2_SCHSO)

HSP 1 Score: 201 bits (512), Expect = 5.120e-65
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:   37 LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            L LP P   +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 LDLPFP--TVMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 113
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: UPI001600ADDD (histone H4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600ADDD)

HSP 1 Score: 202 bits (513), Expect = 6.670e-65
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:   31 QHLILPHPPNQI--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            Q  + PH   Q+  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 QSPVRPHSSTQLIKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132
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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A7S3KWS3_9STRA (Histone H4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWS3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.300e-65
Identity = 105/113 (92.92%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:   37 LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            L L +    IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   12 LFLRNQHQFIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7NPF6_LACSI2.480e-6790.00Histone H4 n=1 Tax=Lactuca saligna TaxID=75948 Rep... [more]
W7TR01_9STRA2.740e-6797.25Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 Re... [more]
A0A2J6KUW8_LACSA4.050e-6790.00Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID... [more]
A0A453CQE5_AEGTS1.380e-6688.71Histone H4 n=3 Tax=Aegilops tauschii subsp. strang... [more]
A0A5D2RII0_GOSTO6.260e-6686.40Histone H4 n=1 Tax=Gossypium tomentosum TaxID=3427... [more]
A0A453N2X0_AEGTS1.430e-6591.38Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R... [more]
A0A3L6V663_9STRA3.740e-6592.04Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A0V0JCE2_SCHSO5.120e-6592.92Histone H4 (Fragment) n=1 Tax=Schistocephalus soli... [more]
UPI001600ADDD6.670e-6589.74histone H4-like n=1 Tax=Branchiostoma floridae Tax... [more]
A0A7S3KWS3_9STRA7.300e-6592.92Histone H4 n=1 Tax=Amphora coffeiformis TaxID=2655... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10650contigS-dermatodea_contig10650:2482..2859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score204.1
Seed ortholog evalue3.7e-50
Seed eggNOG ortholog9818.XP_007955096.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
EggNOG free text desc.protein heterodimerization activity
EggNOG OGs39ZTV@33154,3BPDH@33208,3D6BK@33213,48E1W@7711,494V8@7742,COG2036@1,KOG1745@2759,KOG3467@2759
COG Functional cat.B
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.6085396-CDS-S-dermatodea_contig10650:2481..28591622924167.6085396-CDS-S-dermatodea_contig10650:2481..2859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 2482..2859 -
1694079063.9068758-CDS-S-dermatodea_contig10650:2481..28591694079063.9068758-CDS-S-dermatodea_contig10650:2481..2859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10650 2482..2859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10650.452.1prot_S-dermatodea_contig10650.452.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10650 2482..2859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10650.452.1

>prot_S-dermatodea_contig10650.452.1 ID=prot_S-dermatodea_contig10650.452.1|Name=mRNA_S-dermatodea_contig10650.452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
PPSHNIQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQ
GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAR
RKTVTAMDVVYALKRQGRTLYGFGG*
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mRNA from alignment at S-dermatodea_contig10650:2482..2859-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10650.452.1 ID=mRNA_S-dermatodea_contig10650.452.1|Name=mRNA_S-dermatodea_contig10650.452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig10650:2482..2859- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCCTCTCACAATATACAACCACCTCTCCAACACCTCATTCTACCTCA
CCCACCAAACCAAATCATGTCTGGACGCGGAAAGGGCGGCAAGGGTCTGG
GCAAGGGCGGTGCCAAGCGCCACCGCAAGGTACTCCGTGACAACATCCAG
GGCATCACCAAGCCCGCGATCCGCCGCCTGGCTCGCCGCGGCGGTGTCAA
GCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGT
TCCTTGAGAACGTGATCCGCGACTCGGTCACCTACACCGAGCACGCCCGC
CGGAAGACCGTGACCGCGATGGATGTGGTGTACGCCCTCAAGCGCCAGGG
CCGCACTCTCTACGGGTTCGGCGGCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10650:2482..2859-

>mRNA_S-dermatodea_contig10650.452.1 ID=mRNA_S-dermatodea_contig10650.452.1|Name=mRNA_S-dermatodea_contig10650.452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig10650:2482..2859- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCACCCTCTCACAATATACAACCACCTCTCCAACACCTCATTCTACCTCA
CCCACCAAACCAAATCATGTCTGGACGCGGAAAGGGCGGCAAGGGTCTGG
GCAAGGGCGGTGCCAAGCGCCACCGCAAGGTACTCCGTGACAACATCCAG
GGCATCACCAAGCCCGCGATCCGCCGCCTGGCTCGCCGCGGCGGTGTCAA
GCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGT
TCCTTGAGAACGTGATCCGCGACTCGGTCACCTACACCGAGCACGCCCGC
CGGAAGACCGTGACCGCGATGGATGTGGTGTACGCCCTCAAGCGCCAGGG
CCGCACTCTCTACGGGTTCGGCGGCTAACCACCCTCTCACAATATACAAC
CACCTCTCCAACACCTCATTCTACCTCACCCACCAAACCAAATCATGTCT
GGACGCGGAAAGGGCGGCAAGGGTCTGGGCAAGGGCGGTGCCAAGCGCCA
CCGCAAGGTACTCCGTGACAACATCCAGGGCATCACCAAGCCCGCGATCC
GCCGCCTGGCTCGCCGCGGCGGTGTCAAGCGCATCTCCGGGCTCATCTAC
GAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGATCCGCGA
CTCGGTCACCTACACCGAGCACGCCCGCCGGAAGACCGTGACCGCGATGG
ATGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACTCTCTACGGGTTCGGC
GGCTAA
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