prot_S-dermatodea_contig10650.452.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig10650.452.1
Unique Name	prot_S-dermatodea_contig10650.452.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	126

Homology

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A6S7NPF6_LACSI (Histone H4 n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NPF6_LACSI)

HSP 1 Score: 209 bits (531), Expect = 2.480e-67
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0

Query:    6 IQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            + PPLQ L+L    N  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   35 VSPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: W7TR01_9STRA (Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR01_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.740e-67
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0

Query:   17 HPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            HP +QIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   17 HPNSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A2J6KUW8_LACSA (Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID=A0A2J6KUW8_LACSA)

HSP 1 Score: 209 bits (531), Expect = 4.050e-67
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 0

Query:    6 IQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            + PPLQ L+L    N  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   50 VSPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 169

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A453CQE5_AEGTS (Histone H4 n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CQE5_AEGTS)

HSP 1 Score: 207 bits (526), Expect = 1.380e-66
Identity = 110/124 (88.71%), Postives = 113/124 (91.13%), Query Frame = 0

Query:    6 IQPPLQH----LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            I P LQH    L+LP P    MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   32 IHPKLQHPHHSLLLPDP--STMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 153

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A5D2RII0_GOSTO (Histone H4 n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2RII0_GOSTO)

HSP 1 Score: 204 bits (519), Expect = 6.260e-66
Identity = 108/125 (86.40%), Postives = 113/125 (90.40%), Query Frame = 0

Query:    1 PPSHNIQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            PPS  +Q  +QHL      +  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    6 PPSDTVQ--IQHLF----DSSKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 124

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A453N2X0_AEGTS (Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A453N2X0_AEGTS)

HSP 1 Score: 203 bits (516), Expect = 1.430e-65
Identity = 106/116 (91.38%), Postives = 108/116 (93.10%), Query Frame = 0

Query:   10 LQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            L H   P  P  IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 LLHFQTPSAP-PIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 117

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.740e-65
Identity = 104/113 (92.04%), Postives = 106/113 (93.81%), Query Frame = 0

Query:   13 LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
             +  + P   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 FVSSNKPTSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A0V0JCE2_SCHSO (Histone H4 (Fragment) n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0JCE2_SCHSO)

HSP 1 Score: 201 bits (512), Expect = 5.120e-65
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 0

Query:   13 LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            L LP P   +MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 LDLPFP--TVMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 113

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: UPI001600ADDD (histone H4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600ADDD)

HSP 1 Score: 202 bits (513), Expect = 6.670e-65
Identity = 105/117 (89.74%), Postives = 109/117 (93.16%), Query Frame = 0

Query:   11 QHLILPHPPNQI--MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            Q  + PH   Q+  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   16 QSPVRPHSSTQLIKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 132

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BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Match: A0A7S3KWS3_9STRA (Histone H4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWS3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 7.300e-65
Identity = 105/113 (92.92%), Postives = 107/113 (94.69%), Query Frame = 0

Query:   13 LILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125
            L L +    IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   12 LFLRNQHQFIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 124

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10650.452.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6S7NPF6_LACSI	2.480e-67	90.00	Histone H4 n=1 Tax=Lactuca saligna TaxID=75948 Rep...	[more]
W7TR01_9STRA	2.740e-67	97.25	Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 Re...	[more]
A0A2J6KUW8_LACSA	4.050e-67	90.00	Histone H4 n=1 Tax=Lactuca sativa TaxID=4236 RepID...	[more]
A0A453CQE5_AEGTS	1.380e-66	88.71	Histone H4 n=3 Tax=Aegilops tauschii subsp. strang...	[more]
A0A5D2RII0_GOSTO	6.260e-66	86.40	Histone H4 n=1 Tax=Gossypium tomentosum TaxID=3427...	[more]
A0A453N2X0_AEGTS	1.430e-65	91.38	Histone H4 n=2 Tax=Mesangiospermae TaxID=1437183 R...	[more]
A0A3L6V663_9STRA	3.740e-65	92.04	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A0V0JCE2_SCHSO	5.120e-65	92.92	Histone H4 (Fragment) n=1 Tax=Schistocephalus soli...	[more]
UPI001600ADDD	6.670e-65	89.74	histone H4-like n=1 Tax=Branchiostoma floridae Tax...	[more]
A0A7S3KWS3_9STRA	7.300e-65	92.92	Histone H4 n=1 Tax=Amphora coffeiformis TaxID=2655...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 111..122 score: 97.79 coord: 42..61 score: 93.38 coord: 84..98 score: 91.96 coord: 99..111 score: 90.05 coord: 62..82 score: 93.56 coord: 27..38 score: 95.59
IPR001951	Histone H4	SMART	SM00417	h44	coord: 38..112 e-value: 1.8E-29 score: 113.9
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 58..118 e-value: 3.6E-8 score: 33.5
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 24..125 e-value: 4.6E-60 score: 202.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..122
None	No IPR available	PANTHER	PTHR10484:SF171		coord: 14..125
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 14..125
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 37..41

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10650	contig	S-dermatodea_contig10650:2482..2859 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10650.452.1	mRNA_S-dermatodea_contig10650.452.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig10650 2482..2859 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig10650.452.1 ID=prot_S-dermatodea_contig10650.452.1|Name=mRNA_S-dermatodea_contig10650.452.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
PPSHNIQPPLQHLILPHPPNQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQ
GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAR
RKTVTAMDVVYALKRQGRTLYGFGG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001951	Histone_H4
IPR035425	CENP-T/H4_C
IPR009072	Histone-fold
IPR019809	Histone_H4_CS