mRNA_S-dermatodea_contig105.355.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig105.355.1
Unique NamemRNA_S-dermatodea_contig105.355.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig105.355.1 vs. uniprot
Match: D8LN17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN17_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 1.710e-108
Identity = 187/282 (66.31%), Postives = 213/282 (75.53%), Query Frame = 1 
Query:  196 VASSRILLPSLVFHVLVFLCLATEVPVYACRYASGGGFCSVG-----RPLYALHLASYLLLFNAFCVIVTLWSDVAVFEPNEWTVLMNSRSMLVLCLCYLLVTAVAVSVCLGLGGVKYFFSSTVFLLFCAYSIAALLLLGSCFLVLGCLLQRRICRVLVAGSCTATTTARVVRLNVVMLACFVCFTMRAFMLAALVEVQAEGEIDRNFGMGWEKWEWDMRMEWAPHVIPCVAMLYLMRNSGEPASGGSEEARH-------NDEKTELGSVETSGGYGSYGSG 1005
            VASSR+++PSL+FHVLVFLCLA EVPVYACR+ S  G  +VG     R LYALH+ SYLLLF AF V+VTLW+DVAVFEPNE T LMN RSM+ LC+CY+LVT +AVSVCLG+G VKYF SS  FLLFCAYSIA LLLLG+ FLVLGCLLQ+RICRVLV GSCTA  TAR+VRLNVVMLACF CFTMRA MLA L++ QAEGE   N+  GW++ E DMR+EWA HVIPCVAMLYLMR +GEP+S  S  A          DE T     +   GYG    G
Sbjct:   64 VASSRVIVPSLLFHVLVFLCLAVEVPVYACRWLSSSGI-AVGLVQGDRSLYALHMTSYLLLFMAFSVVVTLWNDVAVFEPNECTALMN-RSMVALCVCYVLVTGIAVSVCLGVGNVKYFLSSFAFLLFCAYSIAVLLLLGASFLVLGCLLQQRICRVLVTGSCTARLTARIVRLNVVMLACFTCFTMRALMLAGLIQAQAEGEESGNYASGWKRREQDMRLEWALHVIPCVAMLYLMRKAGEPSSSSSSTATTPAGKEYGGDESTGFSGADVEDGYGEQAPG 343
[Close]
BLAST of mRNA_S-dermatodea_contig105.355.1 vs. uniprot
Match: A0A836C8B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 5.730e-53
Identity = 145/347 (41.79%), Postives = 184/347 (53.03%), Query Frame = 1 
Query:   22 LAGLLTMCVVSAIALVRLVAVLRTFRRQ---RRGLHS--SSNCY----LLPRHDSGNSSVANGAGSSVASSRILLPS-LVFHVLVFLCLATEVPVYACRYASGGG---FCSVGRPLYALHLASYLLLFNAFCVIVTLWSDVAVFEPNEWTVLMNSRSMLVLCLCYLLVTAVAVSVCL-GLGGVKYFFSSTVFLLFCAYSIAALLLLGSCFLVLGCLLQRRICRVL------------------------------------------VAGSCTATTTARVVRLNVVMLACFVCFTMRAFMLAALVEVQAEGEIDRNFGMGWEKWEWDMRMEWAPHVIPCVAMLYLMR 894
            LAGL+T  + +AIA  RL+ VLR   R    RR L    S + Y      P H +           ++     LLP   +FHVLVFLCLA EVPVYA  Y +  G      VGR LYALHL SYLLL  AFC+IV LWS VA FEP+ W +L N R +LVLC+ Y LVTAVAV  CL      + +F+S  F+ FCA+SI ALLLL +CFLVLGCL+Q+RIC  L                                                   T  V+RLN V+L CFVCF+ RA +L  L+ ++  G        GW +W+ ++ +EW P+V+PC+A+LYLMR
Sbjct:    9 LAGLVTTALAAAIAAWRLLVVLRQVWRYGGWRRVLAEPFSKDAYEDLDRQPHHYA-------TQDQTLPQEESLLPQRAMFHVLVFLCLAVEVPVYAYHYVTLRGQDVSFEVGRDLYALHLTSYLLLCAAFCIIVMLWSSVASFEPSAWLLLAN-RLLLVLCVLYFLVTAVAVGRCLCEASSSQSYFTSLPFITFCAFSIGALLLLAACFLVLGCLMQQRICSALGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLTGTVLRLNAVVLTCFVCFSARALLLVRLLRLETAGADALG---GWTRWQQEVYVEWIPNVVPCLALLYLMR 344
[Close]
BLAST of mRNA_S-dermatodea_contig105.355.1 vs. uniprot
Match: A0A7S3XM64_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM64_HETAK)

HSP 1 Score: 113 bits (282), Expect = 1.290e-23
Identity = 80/250 (32.00%), Postives = 123/250 (49.20%), Query Frame = 1 
Query:  211 ILLPSLVFHVLVFLCLATEVPVYACRYASGGGFCSVGRP---------LYALHLASYLLLFNAFCVIVTLWSDVAVFEPNEWTVLMNSRSMLVLCLCYLLVTAVAVSVCLGLGGVKYFFSSTVFLLFCAYSIAALLLLGSCFLVLGCLLQRRICRVLVAGSCTATTT-ARVVRLNVVMLACFVCFTMRAFMLAALVEVQAE-------GEIDRNFGMGWEKWEWDMRMEWAPHVIPCVAMLYLMRNSGEP 909
            ++   L+FH L+ L L  ++P+Y C YA  G   S G           LY +++ SY LLF AFC+++ LW+ + +F      +L+  RS++ +C+ Y L +  A   C+    +  +  S  ++LF    I  L  L   FL++GC+LQ RICR L           A V RLN V+  C + F MRA +L A +   A                +  E W   +  EW PH+ PC+A++YL+RN+  P
Sbjct:   64 VVQQKLLFHQLILLSLMLQIPLYVC-YAIAG---SQGEEDSSERYFEYLYPVNIMSYWLLFCAFCLVINLWASLVIFNTGSRWILVLRRSLVAICILYALASMYACLDCIFSSSLWSWLESGTYVLFDFCCIGVLTFLSGAFLIVGCMLQGRICRALAPQERGRPRFWATVARLNGVIFVCTISFAMRAALLLASLAAGAPYADTVSPAAAAPPAALSVETWL--VLAEWVPHLAPCIALMYLLRNASGP 307
[Close]
BLAST of mRNA_S-dermatodea_contig105.355.1 vs. uniprot
Match: A0A6H5KRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.930e-6
Identity = 28/58 (48.28%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:  835 MRMEWAPHVIPCVAMLYLMRNSGEPASGGSEEARH------NDEKTELGSVETSGGYG 990
            M +EWA HVIPCVAMLYLMR +GEP+S  S  A         +E+T     +   GYG
Sbjct:    1 MMLEWALHVIPCVAMLYLMRKAGEPSSSSSSTATTAGKDYGGNERTGFTGADVEDGYG 58
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig105.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LN17_ECTSI1.710e-10866.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8B0_9STRA5.730e-5341.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XM64_HETAK1.290e-2332.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5KRT8_9PHAE6.930e-648.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig105contigS-dermatodea_contig105:25163..30722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_001030.1
Exons5
Model size2122
Cds size1014
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig105.355.1prot_S-dermatodea_contig105.355.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig105 26271..30722 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.1394348-UTR-S-dermatodea_contig105:25162..262701622924160.1394348-UTR-S-dermatodea_contig105:25162..26270Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig105 25163..26270 -
1694079058.6582444-UTR-S-dermatodea_contig105:25162..262701694079058.6582444-UTR-S-dermatodea_contig105:25162..26270Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig105 25163..26270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.1515956-CDS-S-dermatodea_contig105:26270..264631622924160.1515956-CDS-S-dermatodea_contig105:26270..26463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 26271..26463 -
1694079058.6683536-CDS-S-dermatodea_contig105:26270..264631694079058.6683536-CDS-S-dermatodea_contig105:26270..26463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 26271..26463 -
1622924160.1615558-CDS-S-dermatodea_contig105:27166..272791622924160.1615558-CDS-S-dermatodea_contig105:27166..27279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 27167..27279 -
1694079058.6778646-CDS-S-dermatodea_contig105:27166..272791694079058.6778646-CDS-S-dermatodea_contig105:27166..27279Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 27167..27279 -
1622924160.1822066-CDS-S-dermatodea_contig105:27747..278801622924160.1822066-CDS-S-dermatodea_contig105:27747..27880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 27748..27880 -
1694079058.6873167-CDS-S-dermatodea_contig105:27747..278801694079058.6873167-CDS-S-dermatodea_contig105:27747..27880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 27748..27880 -
1622924160.1923244-CDS-S-dermatodea_contig105:28603..287321622924160.1923244-CDS-S-dermatodea_contig105:28603..28732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 28604..28732 -
1694079058.70042-CDS-S-dermatodea_contig105:28603..287321694079058.70042-CDS-S-dermatodea_contig105:28603..28732Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 28604..28732 -
1622924160.2002184-CDS-S-dermatodea_contig105:30276..307221622924160.2002184-CDS-S-dermatodea_contig105:30276..30722Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 30277..30722 -
1694079058.7136946-CDS-S-dermatodea_contig105:30276..307221694079058.7136946-CDS-S-dermatodea_contig105:30276..30722Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig105 30277..30722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig105.355.1

>prot_S-dermatodea_contig105.355.1 ID=prot_S-dermatodea_contig105.355.1|Name=mRNA_S-dermatodea_contig105.355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=338bp
MREQSLILAGLLTMCVVSAIALVRLVAVLRTFRRQRRGLHSSSNCYLLPR
HDSGNSSVANGAGSSVASSRILLPSLVFHVLVFLCLATEVPVYACRYASG
GGFCSVGRPLYALHLASYLLLFNAFCVIVTLWSDVAVFEPNEWTVLMNSR
SMLVLCLCYLLVTAVAVSVCLGLGGVKYFFSSTVFLLFCAYSIAALLLLG
SCFLVLGCLLQRRICRVLVAGSCTATTTARVVRLNVVMLACFVCFTMRAF
MLAALVEVQAEGEIDRNFGMGWEKWEWDMRMEWAPHVIPCVAMLYLMRNS
GEPASGGSEEARHNDEKTELGSVETSGGYGSYGSGPG*
back to top

mRNA from alignment at S-dermatodea_contig105:25163..30722-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig105.355.1 ID=mRNA_S-dermatodea_contig105.355.1|Name=mRNA_S-dermatodea_contig105.355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5560bp|location=Sequence derived from alignment at S-dermatodea_contig105:25163..30722- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCGAGCAGAGCCTCATCCTGGCGGGCCTGCTGACCATGTGCGTCGT
GTCCGCGATCGCCCTGGTGCGCCTGGTTGCGGTTCTGCGGACCTTCCGCC
GCCAGCGGCGGGGCTTGCATTCCAGCAGCAACTGCTACCTCCTGCCGCGC
CATGACAGCGGGAACAGCAGCGTGGCCAACGGCGCCGGCTCATCTGTGGC
CTCCTCGCGCATACTGCTTCCCTCGCTCGTGTTCCACGTCCTGGTCTTCC
TGTGCCTGGCGACGGAGGTGCCCGTGTACGCGTGCCGCTACGCGTCCGGT
GGCGGATTTTGCAGCGTGGGGCGGCCGCTTTACGCGCTCCACCTGGCGAG
CTACCTGCTGCTGTTCAACGCGTTCTGTGTGATCGTCACGCTCTGGAGCG
ACGTGGCCGTGTTCGAGCCGAACGAGTGGACCGTGCTCATGAACAGGTGC
GTTGGATAGGGGCGGGGACAGCTTCAACTAGAGACGTGCGAGGTGTTTGT
GCACGTTGTTTTTATTGGCTGCTGCTGGGTGCGACTGCTATTCTTCTGCT
GGTATTGCTGTAAAGGTCGTGTGGTGTGCTGGATGGAGTCATGATTTTTT
AGAAATTGAGTGAGTATGGTTGACGTTTCCGTTTCGCAGTAAAATCAAAT
GAATGTCCGCCCGCCCTTTGTTCTCTGTGTCGTTCCATCTTGACCTGTCA
GCAGCAGCAGTATCAGAGAGCTCTATTGTTTTATTTAGTTTTTGTGTCAC
TAGTGACTGCCGCGGCGGCGGGACGGAGCCACAGACAGTTCGCGGTTAGA
TCGAAGGCCTCCTCAACAGTCAGTCCATTCTAAATTCTAGTGAAAGCGTG
CCCGGTGCCACTGCTGCTGTTTGTCGCTGCGGTCGCGCCAGCGCGGCCGT
TGGTTGCGGTGCGTCGGAGATGAAGGAGCACCAACAAAAATAACTCGGAA
CAACAAAGTTACCGGCCTGTACGTTCTTTGAGTCCTTGCGTCCTTTGCAC
CCTTGCTCCCTTTGCCCGCCCCGCGCCTGCCTGCAGTCAATCTTTTTATA
ATAGTTTTTAGAGGATGAGGCAGCAGTGGGGAATGCCCGAGTGCCACAGA
GCTGTGCAGCCTGCTTTTATTCGCGGTTGGACTATAACAGCTCGCGATGC
GACGCTGCTGCTGCTGCTGTCGAGTACTTGTACTGGTAGCTTGCTGTTGT
CCGCTTTTGTTTGCGCCAATTCGCAGTGCTATCATACACAGAATCACACC
ACGGCAACCGAAGCACCTTTTAATTATTCTGTAATGCTGCTCTGTACCTG
TAGAGGTACACTCCGCTGTGGGGTCACTGGCCAAAAGGGTCTGCGGCGAA
CACGGTCGCCTGCTCGGGTAGCCCGCGATTTCACTTGTTATGTTGCAGTT
TACACCTGTATCGTCTTTGGGCAATCCCTCAAGGCCGCCAATCAACACTG
TTTCTAGCGCGAGACTGCTGTCCCCAAAACTTCCTTCGACCACCACATAC
ATGCACCAGGCCATGGGCATGTGCCAGTCTACGGTCTACGGCAGCGCTCG
TAGAGCTGCGTTTCTGTTTATTGTTTATTTGGCCCAAGAACACAGAGTAA
GCGCCCTTGTCTTCTGTACAAGTATTGGATGTACCAGGTAGTAAATAGTA
ATGGCGTTTCCCGTCTGCACACTTGTAGTCGGCTTTTCTTGTGCGAATCA
ATATATTACACCAATCCTATAATATCGAAGGTTTGTACTCGAGCCGTGCG
CCATACGTAGCTTCATTGCAAGAGCGAACAACAAACACTATCCCGCGCCT
CCTCTCGCCTTGGTAGGGCCTGCCTTACCGTGACCCTGGCTGGCAAAATG
TCGACCAACCATATTGCTCTATATACAAGGTACTGTATGCGGCCGACGTC
TTCCGGCTGTCTAGAACTATGCTGTTCTCGCGTGCGGCGGATTGACCTAT
TATATTCTACTATAACGTTTTTTCTCGCGCCAAACTCGAGCAGGTCGATG
CTGGTGCTGTGCCTCTGCTACCTGCTGGTTACGGCGGTCGCTGTCAGCGT
TTGCCTCGGCCTTGGGGGCGTCAAGTATTTCTTCTCCAGCACCGTGTTCC
TGCTCTTCTGCGCTTACAGGTAAGGACGTGGGGCATCGTGCTGTGCGAAG
CACGACTGCTGCCTGTCGCTGTTAGAAGGCCCTCTCACTCTTCTCCTCCC
AGTACCACACGTGTACATGAAGCAGGTATAACAAATACCCGAAACCTCCT
CTCCCGAGTAAGGTTGTGCAGTACAATTACTGTAGAGAAATCGGCACACT
TGCTGTTCGGCTCGGGGATGCTGGCGAGCTTCGTCGTTATTCACCTTGTT
GTACCTGCATCAAAGAAGTACCGTAGAAGAAGTTAACTATATTCCTGGAC
AGGAACGGCACCCAGGGGGAGGGAGGGGGCGGCGCGGATACCGGGACTTC
GGGCCATCGGAAGACGTCACCGCACCCAATCGGCAACCATCTTCAATGTA
GTACATAGGGCAGCTATACAGTAGGCGACCCTAGAACATCATGCATAACG
TAGACCTCCACCGAGTTAGCTTGGGCCATCTTTTACTCCACAAAAAATCT
TGGACCCCAACGTTCGCTCTGTGTTGTATAAATATTTTACTGTTTCAGGG
GGGGGGGAGCGGCGGCTCTGGTTTGTTTCGGACGGTCGACGAAACCAGGT
TATTTTGTTTTCGTACCCAAACACCCCCTGTGTTATCCGCGACGTTTGCG
TCATTGTCATCCTTACCGCACGTTCACGAGTAGTGTACCACCCACACCCC
ACCACCCCTCCCTGTCAAACGGACGACGCACTGCAAATGCAGCATCGCCG
CCTTGCTCCTCCTCGGCTCGTGCTTCCTGGTACTGGGCTGTCTCCTTCAG
CGCCGTATATGCCGTGTGCTGGTGGCCGGCAGCTGTACCGCTACAACAAC
GGCACGGGTGGTTCGTCTCAATGTGGTGAGACTACTATGATGCTGTAATA
CGGCAATGCTGTACAGGTTGCAAGCGTCGCGCAACATCTTAAGCGTGTGT
ATTCATGTAAAATGTCACTTGTCGCTGCCGGGCCGTGCACGTGTGCTTAC
GTGCTGAGCTGTTATCATACACAGTATGTGCGCAAAGGAGTCGTAGTGTT
GTTGCCTTGCCGGTTGTGATGCTCTGCAGCACGTTTGCATCGGAACACGA
GACCGGTAGTAACCAATATCCTCCTCTCGTTAAAGCCGAAGCCGCAACGC
TAGCTACCCTGTCGTAGCGCTTCGGACCATCTCCTGGTACCATACTTGTA
CGAGCGGAGCTACCCACGCCTGCGAGAACCCCCTTGGATACACGCCGCTC
CGCAAGGAAGTGTAAAACCCTTGCGAACCTGCTAGAAGTATGTGTAAAAA
AAAATCGCCCCTCGTTGCGTTCTTGGTCCGATTCACCCCGCAGGTTATGT
TGGCGTGCTTCGTGTGCTTCACGATGAGGGCGTTCATGCTGGCAGCCCTG
GTGGAGGTGCAGGCGGAGGGCGAGATCGACCGGAATTTCGGCATGGGTTG
GGAGAAGTGAGCTATCGCGCAGTTGCTACCGCGGCCGTTACGGCACAAAC
AGTTGCATACTTCTGCCGCGGTTGGACGGGGTATGCTTCTACACTCACAC
ATGATATGATATATACCCGTGCATGTTCCCTGAGGGTAGGGTGCACCCCT
TTCCCGCGCGGTTCGCCTTGGATGGTTCGCCCGCGTCGGAGCGACTCGGA
TATTAGTTCTTGCTTTGCTCAAGTGCTGGCAATATAGGCTCTTCTTTTGT
AAGCTCTGTAGAAGACACCAGTAGTAGCATAGCCACGAACTGTGGTTGCC
TGTGGTGGCTGGCTTGGAGCCCGACCTCGGTGCACGCATGGTCACCAAAT
CCGAACGAGAGCACAGCGCTCGCTTATCACTGCTCGTTTGTGTATAAATG
GCTACTTCCACCTTTGCTGCACCTGTCACCGCCACACACATCCGCACGTA
CCATAGTAGTCGCCACTTTTTCTGTTCTCTGGGGATCTCGCTCTCGTCCC
TCACCGCTACCACCCACCGATGTGAGGGCCGAGCCTCGCCATCCATTGCG
TGCGATAGAAGTAGGCGCTGTTTCTGCGCTTGTGGGGTGCGGCCAGCGCT
TCTACTGTACTGACGTTGAGATCGTTTTCGCCGCAGAATCGACGGAGGCT
TTTTACTCACCTCGTACTACTGTAACCTCTCACCTTTTATTTAACGCGTT
GTTGCTCAGATGGGAGTGGGATATGAGGATGGAGTGGGCACCCCACGTGA
TACCTTGCGTGGCCATGCTGTACCTGATGCGGAACTCCGGGGAGCCGGCA
TCGGGCGGGAGCGAAGAAGCGCGGCATAACGACGAAAAGACCGAACTGGG
CAGCGTGGAGACGTCTGGCGGTTACGGCAGCTACGGCAGCGGTCCCGGCT
GAAACAGCGGCGCTCGAAAAACTTACGTGTCGTATTGTTACGAAAGGAAA
GCAGTGTACAGCGGTGATGCGCTTTTGTTGTTCGGTGAAGCGTGAGCCAG
AACCACGCAGTCAAGTGCCTGTCTTTTCCGTTTTTTAAAAGCGCCCTCCG
AGTCTTTGGGGGGGTAGCGTTTCCTGCAGCTGCGCAGCAGGCGATTCATG
CGCTGCTCGCCCTGCGCAAGTTCTATGTGCTAAATCTATGTTCATAGAAC
TTGCGGGCCGTGTACACTTTTGGATTGCTGGCTCTGCGTCCCATCCCATG
CCGGCTGGAAGTATGTATATATATATACCGTAGTCGCAGATTCGATAGGG
CGCCGCCCACGTTGCTTGCCTCGTATTATTTGACAAGCACCAAAGGCATG
GCTTCTCGGCACACCCAGTCACGGCCGCACTCAGCAACGTGCAGCGACCG
CGCGTACTTTCTATCGTGTAGCATGTCGAAGTAAAGCGAGTGTATTTCAC
AGCGGTTAAAGGGCGTGCGCGCGGGCTTGTCTGAACGATCGAGTTGCAGC
CGTCGCTCATGATTGCCGGGCACGGCCAAGTGCGCCGTCGACAAGTCCGC
CCAAGTATGCACGCCGTTGTGCGCGGCGTAGTTAGTTGCGGGGGGGCGAT
ATGCCCGATGCCGTATGAAGAGGTGCTGTTGAATTTTGCTGTACATGACG
TGCCTTGACGAGCACTAGGGTTCGCGAGAGTGGATGGTGAAAGGCTGTTT
TGGGAGAGGGTTCGGCTTTGGAAAAGCCTAACTGACTTGTTAGATTCTCG
CGTTTGAGTCATTCTCTGGGACGTTTGGACGTTAATGTTCGCAGGCGTTA
GACTTGCTTTTTTTACTGGTCAGCATGTATGTGCGACCTGCTCCAGTGCC
CCCTTTCTTTGCCTGTTGTCTGTGTGCTTGTTTTAGGTTTTGGAACGGTT
GGTGGGGCTTTGTTTTGCCCTCGAGAACAATATATGAGATTTAATTTTTG
TTCCGCGACAGAGATACCGGAGGTGATGATGGCACGGCGAGGAGACGGAG
ACTTTTCACTTACAGATAGATCCCCGCACCGGTTTTCAGCATGTTACAGC
AAGATTCCAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig105:25163..30722-

>mRNA_S-dermatodea_contig105.355.1 ID=mRNA_S-dermatodea_contig105.355.1|Name=mRNA_S-dermatodea_contig105.355.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at S-dermatodea_contig105:25163..30722- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCGAGCAGAGCCTCATCCTGGCGGGCCTGCTGACCATGTGCGTCGT
GTCCGCGATCGCCCTGGTGCGCCTGGTTGCGGTTCTGCGGACCTTCCGCC
GCCAGCGGCGGGGCTTGCATTCCAGCAGCAACTGCTACCTCCTGCCGCGC
CATGACAGCGGGAACAGCAGCGTGGCCAACGGCGCCGGCTCATCTGTGGC
CTCCTCGCGCATACTGCTTCCCTCGCTCGTGTTCCACGTCCTGGTCTTCC
TGTGCCTGGCGACGGAGGTGCCCGTGTACGCGTGCCGCTACGCGTCCGGT
GGCGGATTTTGCAGCGTGGGGCGGCCGCTTTACGCGCTCCACCTGGCGAG
CTACCTGCTGCTGTTCAACGCGTTCTGTGTGATCGTCACGCTCTGGAGCG
ACGTGGCCGTGTTCGAGCCGAACGAGTGGACCGTGCTCATGAACAGATGC
GCGAGCAGAGCCTCATCCTGGCGGGCCTGCTGACCATGTGCGTCGTGTCC
GCGATCGCCCTGGTGCGCCTGGTTGCGGTTCTGCGGACCTTCCGCCGCCA
GCGGCGGGGCTTGCATTCCAGCAGCAACTGCTACCTCCTGCCGCGCCATG
ACAGCGGGAACAGCAGCGTGGCCAACGGCGCCGGCTCATCTGTGGCCTCC
TCGCGCATACTGCTTCCCTCGCTCGTGTTCCACGTCCTGGTCTTCCTGTG
CCTGGCGACGGAGGTGCCCGTGTACGCGTGCCGCTACGCGTCCGGTGGCG
GATTTTGCAGCGTGGGGCGGCCGCTTTACGCGCTCCACCTGGCGAGCTAC
CTGCTGCTGTTCAACGCGTTCTGTGTGATCGTCACGCTCTGGAGCGACGT
GGCCGTGTTCGAGCCGAACGAGTGGACCGTGCTCATGAACAGCAGGTCGA
TGCTGGTGCTGTGCCTCTGCTACCTGCTGGTTACGGCGGTCGCTGTCAGC
GTTTGCCTCGGCCTTGGGGGCGTCAAGTATTTCTTCTCCAGCACCGTGTT
CCTGCTCTTCTGCGCTTACAGCAGGTCGATGCTGGTGCTGTGCCTCTGCT
ACCTGCTGGTTACGGCGGTCGCTGTCAGCGTTTGCCTCGGCCTTGGGGGC
GTCAAGTATTTCTTCTCCAGCACCGTGTTCCTGCTCTTCTGCGCTTACAG
CATCGCCGCCTTGCTCCTCCTCGGCTCGTGCTTCCTGGTACTGGGCTGTC
TCCTTCAGCGCCGTATATGCCGTGTGCTGGTGGCCGGCAGCTGTACCGCT
ACAACAACGGCACGGGTGGTTCGTCTCAATGTGCATCGCCGCCTTGCTCC
TCCTCGGCTCGTGCTTCCTGGTACTGGGCTGTCTCCTTCAGCGCCGTATA
TGCCGTGTGCTGGTGGCCGGCAGCTGTACCGCTACAACAACGGCACGGGT
GGTTCGTCTCAATGTGGTTATGTTGGCGTGCTTCGTGTGCTTCACGATGA
GGGCGTTCATGCTGGCAGCCCTGGTGGAGGTGCAGGCGGAGGGCGAGATC
GACCGGAATTTCGGCATGGGTTGGGAGAAGTTATGTTGGCGTGCTTCGTG
TGCTTCACGATGAGGGCGTTCATGCTGGCAGCCCTGGTGGAGGTGCAGGC
GGAGGGCGAGATCGACCGGAATTTCGGCATGGGTTGGGAGAAATGGGAGT
GGGATATGAGGATGGAGTGGGCACCCCACGTGATACCTTGCGTGGCCATG
CTGTACCTGATGCGGAACTCCGGGGAGCCGGCATCGGGCGGGAGCGAAGA
AGCGCGGCATAACGACGAAAAGACCGAACTGGGCAGCGTGGAGACGTCTG
GCGGTTACGGCAGCTACGGCAGCGGTCCCGGCTGAATGGGAGTGGGATAT
GAGGATGGAGTGGGCACCCCACGTGATACCTTGCGTGGCCATGCTGTACC
TGATGCGGAACTCCGGGGAGCCGGCATCGGGCGGGAGCGAAGAAGCGCGG
CATAACGACGAAAAGACCGAACTGGGCAGCGTGGAGACGTCTGGCGGTTA
CGGCAGCTACGGCAGCGGTCCCGGCTGA
back to top