prot_S-dermatodea_contig10473.333.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10473.333.1
Unique Nameprot_S-dermatodea_contig10473.333.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length259
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10473.333.1 vs. uniprot
Match: D8LNF2_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 4.960e-63
Identity = 127/223 (56.95%), Postives = 151/223 (67.71%), Query Frame = 0 
Query:    8 PFSKVNRKLTAAMKAFLAPQKRNPAAHRAIVTASLSLLRNSCAASVPSKLSMMAAHALLQAL--------------------------------STANGNTNPGIVLGGEGFPESQIAAFLLDATRVEPPPXXTPPVAVPAHLAVKIIYTFGVGKA----RGNGLEWGSPEVADCLRGSVRRVADKLREQGDWKVVSELVGHMETPRGVDEAESVLGMQLGEM 194
            PF+ V RKL +AMK FLA ++  PAA RA+VTASLS+ R+SCA +VP+KLS MAAHALL+AL                                S + G T   +VLG EGFPESQ+AAFLLD TRVEPPP XTPPVAVPA +A+KII  FGVGKA     G+ LEWG P VAD LRGSVRRVA++L+ +G W +VSELV HMET  GV+E E VLGM+LGE+
Sbjct:   68 PFTVVQRKLASAMKLFLATERLAPAARRAVVTASLSVFRHSCAVTVPAKLSGMAAHALLRALVSVTTGTXXXXXXXXXXXXXXXXXXXHRHRSRSPSTGATGGSLVLGTEGFPESQVAAFLLDVTRVEPPPPXTPPVAVPADVALKIISAFGVGKAGRKGEGHSLEWGGPSVADSLRGSVRRVANRLQREGKWGLVSELVEHMETRGGVEECEGVLGMKLGEV 290
[Close]
BLAST of mRNA_S-dermatodea_contig10473.333.1 vs. uniprot
Match: D7FKA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.940e-14
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 0 
Query:  199 MLVEKWEPAHRLVACAGAGAPRQALARALIPAATVAEAYDVATRLIEENRLQSEFPDYREL 259
            ML E+WEPA RLV+ A AG PRQ LARALIPAAT AEA++ A  LI++N L SEFP+Y  L
Sbjct:    1 MLEEEWEPARRLVSTAAAGLPRQTLARALIPAATDAEAFETAVGLIQDNHLVSEFPNYETL 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10473.333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNF2_ECTSI4.960e-6356.95RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FKA7_ECTSI1.940e-1465.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 36..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..50
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 46..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..259
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10473contigS-dermatodea_contig10473:2698..6142 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10473.333.1mRNA_S-dermatodea_contig10473.333.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10473 2698..6142 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10473.333.1 ID=prot_S-dermatodea_contig10473.333.1|Name=mRNA_S-dermatodea_contig10473.333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp
GTKQSKHPFSKVNRKLTAAMKAFLAPQKRNPAAHRAIVTASLSLLRNSCA
ASVPSKLSMMAAHALLQALSTANGNTNPGIVLGGEGFPESQIAAFLLDAT
RVEPPPPPTPPVAVPAHLAVKIIYTFGVGKARGNGLEWGSPEVADCLRGS
VRRVADKLREQGDWKVVSELVGHMETPRGVDEAESVLGMQLGEMIAAAML
VEKWEPAHRLVACAGAGAPRQALARALIPAATVAEAYDVATRLIEENRLQ
SEFPDYREL
back to top