mRNA_S-dermatodea_contig10473.333.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10473.333.1
Unique NamemRNA_S-dermatodea_contig10473.333.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10473.333.1 vs. uniprot
Match: D8LNF2_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF2_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 4.960e-63
Identity = 127/223 (56.95%), Postives = 151/223 (67.71%), Query Frame = 1 
Query:   22 PFSKVNRKLTAAMKAFLAPQKRNPAAHRAIVTASLSLLRNSCAASVPSKLSMMAAHALLQAL--------------------------------STANGNTNPGIVLGGEGFPESQIAAFLLDATRVEPPPXXTPPVAVPAHLAVKIIYTFGVGKA----RGNGLEWGSPEVADCLRGSVRRVADKLREQGDWKVVSELVGHMETPRGVDEAESVLGMQLGEM 582
            PF+ V RKL +AMK FLA ++  PAA RA+VTASLS+ R+SCA +VP+KLS MAAHALL+AL                                S + G T   +VLG EGFPESQ+AAFLLD TRVEPPP XTPPVAVPA +A+KII  FGVGKA     G+ LEWG P VAD LRGSVRRVA++L+ +G W +VSELV HMET  GV+E E VLGM+LGE+
Sbjct:   68 PFTVVQRKLASAMKLFLATERLAPAARRAVVTASLSVFRHSCAVTVPAKLSGMAAHALLRALVSVTTGTXXXXXXXXXXXXXXXXXXXHRHRSRSPSTGATGGSLVLGTEGFPESQVAAFLLDVTRVEPPPPXTPPVAVPADVALKIISAFGVGKAGRKGEGHSLEWGGPSVADSLRGSVRRVANRLQREGKWGLVSELVEHMETRGGVEECEGVLGMKLGEV 290
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BLAST of mRNA_S-dermatodea_contig10473.333.1 vs. uniprot
Match: D7FKA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA7_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.940e-14
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:  595 MLVEKWEPAHRLVACAGAGAPRQALARALIPAATVAEAYDVATRLIEENRLQSEFPDYREL 777
            ML E+WEPA RLV+ A AG PRQ LARALIPAAT AEA++ A  LI++N L SEFP+Y  L
Sbjct:    1 MLEEEWEPARRLVSTAAAGLPRQTLARALIPAATDAEAFETAVGLIQDNHLVSEFPNYETL 61
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10473.333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNF2_ECTSI4.960e-6356.95RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FKA7_ECTSI1.940e-1465.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10473contigS-dermatodea_contig10473:2698..6142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue3.9e-54
Seed eggNOG ortholog2880.D8LNF2
KEGG koko:K15304,ko:K20282
KEGG Pathwayko05166,map05166
GOsGO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031224,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033036,GO:0033043,GO:0033044,GO:0033157,GO:0033365,GO:0033554,GO:0033750,GO:0034504,GO:0034599,GO:0034613,GO:0042221,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0060341,GO:0060968,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070887,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0090316,GO:1901181,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:1903827,GO:1903829,GO:1904951,GO:2000112,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsCOG5171@1,KOG0864@2759,KOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size779
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10473.333.1prot_S-dermatodea_contig10473.333.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10473 2698..6142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.7254357-CDS-S-dermatodea_contig10473:2697..30601622924158.7254357-CDS-S-dermatodea_contig10473:2697..3060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10473 2698..3060 +
1694079057.832614-CDS-S-dermatodea_contig10473:2697..30601694079057.832614-CDS-S-dermatodea_contig10473:2697..3060Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10473 2698..3060 +
1622924158.7358756-CDS-S-dermatodea_contig10473:3527..37431622924158.7358756-CDS-S-dermatodea_contig10473:3527..3743Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10473 3528..3743 +
1694079057.8445525-CDS-S-dermatodea_contig10473:3527..37431694079057.8445525-CDS-S-dermatodea_contig10473:3527..3743Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10473 3528..3743 +
1622924158.747316-CDS-S-dermatodea_contig10473:5944..61421622924158.747316-CDS-S-dermatodea_contig10473:5944..6142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10473 5945..6142 +
1694079057.856988-CDS-S-dermatodea_contig10473:5944..61421694079057.856988-CDS-S-dermatodea_contig10473:5944..6142Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10473 5945..6142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10473.333.1

>prot_S-dermatodea_contig10473.333.1 ID=prot_S-dermatodea_contig10473.333.1|Name=mRNA_S-dermatodea_contig10473.333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp
GTKQSKHPFSKVNRKLTAAMKAFLAPQKRNPAAHRAIVTASLSLLRNSCA
ASVPSKLSMMAAHALLQALSTANGNTNPGIVLGGEGFPESQIAAFLLDAT
RVEPPPPPTPPVAVPAHLAVKIIYTFGVGKARGNGLEWGSPEVADCLRGS
VRRVADKLREQGDWKVVSELVGHMETPRGVDEAESVLGMQLGEMIAAAML
VEKWEPAHRLVACAGAGAPRQALARALIPAATVAEAYDVATRLIEENRLQ
SEFPDYREL
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mRNA from alignment at S-dermatodea_contig10473:2698..6142+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10473.333.1 ID=mRNA_S-dermatodea_contig10473.333.1|Name=mRNA_S-dermatodea_contig10473.333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3445bp|location=Sequence derived from alignment at S-dermatodea_contig10473:2698..6142+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTACGAAGCAAAGCAAGCACCCGTTCAGCAAGGTCAACCGCAAGCTCAC
CGCCGCGATGAAGGCGTTCCTGGCGCCTCAGAAACGGAACCCGGCCGCCC
ACCGAGCTATCGTAACCGCCTCCCTCAGCCTCCTGCGGAACTCCTGCGCC
GCCAGTGTTCCGTCAAAGCTATCCATGATGGCGGCGCACGCCCTGCTTCA
GGCGCTTAGCACGGCCAACGGCAACACCAACCCAGGCATAGTGCTCGGTG
GGGAGGGTTTCCCGGAGTCGCAGATAGCGGCGTTCTTGCTTGATGCGACG
AGGGTCGAACCGCCCCCTCCGCCAACGCCGCCCGTCGCCGTGCCTGCTCA
CTTGGCCGTTAAGGTGCGACGGGGGATGGTTGGCGGGGTTCTTGTGTTTA
ACGCATGTCGTAGTATATTATATCCGAACGGGTATAGACCACGTAGCGAG
GGGGGGGGAGGGAGTATGGTTCCGGGGATGTTGGTTCCTATGTTTGATGG
TATGTAGTCCATGTCTTCACAGCAGGGAGGGGTGGGGGGTGGGTTCTGGA
GAACGCGCTCACCTTCACTGTTCACACTCACTGTTACCCTCGAGGGGGTG
CGCCCTTGCATTGTCGAGCGCACGATATGCATACGGATATCAGACCAAAT
CGCCCACCGTGGTCCTTAGTCCTTAATCATCCCGCCTTTGGACACTACAG
CCGCCATGAACTGCATCGTGTAACCCCCCCCCCCCCCACCTTCACCGGTG
GAACGCCTTGAAACCCTTGTCCCCCTCGGCGCACGCCGACACGCCTGCCG
CCACCCCCTGGTATTGAATCGTTTCGATAGATCATCTACACCTTTGGTGT
TGGGAAAGCCCGGGGGAACGGGCTGGAATGGGGTAGTCCCGAGGTCGCCG
ACTGCCTCCGCGGCTCTGTCCGACGAGTGGCCGATAAGCTGAGGGAGCAG
GGGGACTGGAAGGTGGTGTCAGAGCTGGTTGGGCACATGGAGACGCCACG
AGGCGTCGACGAGGCTGAGAGCGTGCTTGGGATGCAGCTCGGAGAGGTAA
TTTGTGGAGGGCGAGGGGGGGGGGGGGGCGTACTTGTGTTAAACCAATAT
TGGATTCAGACGGATACATACCATGCGTCCCAACGATACCGGAACGGAGC
GATTTGCAGTGTTTTCACCGGCCAGGCTGCGTTTCACAAGGATGATACCG
GCTCCTAGCCATCATCCTTGCGTTTGCGACGCCAACCGATGTGCCATGGG
TTGATTGAGCATTCCGGGCAAGCAAATGTTGCACATTCAGTAGGCGCGAC
TATACTCCGAGTACCTCAAAGGGACTATACTATACTATACTATACTCCCA
TCTCCGTGCGAACACAAAAGCGCCGCACGCACACAACATACACGACGGTG
TAGGTGTGATACACTCAAGACGATGATCTGCTTACGAGCACTCCTGGCGG
AGTACCAACCATACGTCGGAGTACGATAGTTTAGTGTGCTCTATTGCGGT
GGACCACAATTATCAGTTCCAAATTCGTCACAAATCCCACCTTGAAAAAA
ACGTCTAGGCCAGAAATGATCGGGTAGTTCATGGTTGATGTTGATATATA
GACCAGACCTCGCGTTTTTGTTTTCATAAGGTAAAATATGTTGTTTGGGC
ATTCATGGCTTGCACGGTTGGGCATGCATGGTCGTCACATTTGGCCATGA
TGTCCTAATTACTTGATTATAGTGTACCTCGGTAATAGAGCGTTTCAACA
ATCCATACAAGTACTTCAGCAGGTTTCCTACAGGATATGACGCGTTCCCC
CCCTTTGAGGAGGGACAAGACTCTTCGACCGAGGTCTCTTGAGCTCACAC
GACACATTGCATGAACTCCCGCATGCCCTACAAATAGCAGTTGCACAGGT
CCATGCCACAAGAGCCAATCCTACCTCGCCCACAAGGCCGGCCGGGAGGG
GGGGGGTGCTTGGAGCATATTTCGTCCCTATTGAATTGTTGGGCTGGTCA
GGCGCTCCGGGCGGCGTGCGGGTTATATGTCTGTCATGTCTGGCCATCAG
GTTTTTGTTCGATGTAGGGGTGCTGGATTTAAATTGATCTTGTGCCTTCA
TGCGACCACGAGCGGGATCAGCATCCACCTTTGCAATTGCAAAATTGGCG
GGCCGGTCGGTTGTAAGTGTGAAAATCAATTAAAAAAATCAAAATCAATC
AAATCCTACGCTCGCTCCTGTTTTCGAAATAATCTAGTGTCTCGGGGGGG
CGGGGGGGGTACTTATGTTTGCCGCATGTCGTATCGAAACGGACATGGTC
CACGCATCCCGACAATGCCGGGAAGAGGCTGTATGCCGGGTTTTCGCCGG
CCAGGCTGCCATTTACAGCTGGTATTGATCCTTGCGTTTGCGGCGCCAAA
CCGGATATACCATGGGTTGATTGGACATACCCAGTATGGAAGGGGGAGAA
GGGGGGGGGGGCGGGGGGATACGCGTCTTGTGTTGCCTAACCGGCGTAAT
GTGTGGCGTGTCAAGTATGCCAGGTATGTACGCGGTATCATACCTCTGTG
ATTGTTTCGCTGCACGTCGGAACCAAGCGTCAAGAGCAAGCTCCGCGCTT
GCGTCTCTCTCGTTGCGTACCTAACCGTTTTCCAACGGCGCATCCGGATG
TCGCGCTACGGAACTCCCAGTTGTGCTTTGCTTGTTGGCTGCTTCAGAGC
TTCAGAGCCGCACGTTTAATGTTAACTGCTGTGGCTATTAATAGCTGGAC
TTCAGGTTGTTTATTGCAAGTCTAAAGATTCGAGACAGCGGGACCCGTTG
TCGTAATTCTTTATTCGCTTTCAGCATCTGCGAAAATCTCGCAACCCGCC
AAAAAGTACGTTCGCGTCTTTCAATACCAGTACAACAGCAATACTCTTGG
AACAGCCACCGCGCGCGCGCGGCCCTTCGTTTCCCGCAGCGCGTGCTCCG
TCCGACCGCAAGCATCGAAAGCGTCCCCATGTGCCGTCGCCCGTGAAAAG
GAAAAACCCGTTTTGTTTTTTCTTCTCGCAACCAAAGTCCCCCGTCCTTG
CATAGCCCCCTCGCCCCCGTTTCGCAAAGCTGGCCACTGGCCACCGGCCC
GCGCCTCCACGCCTTCCCGCGCGCACCTAAGATGATTTTTTTCACGGGCA
AGGGCCGCCCAGACCGCGCTCTAACACCCAATTGTCACAGCAACCCGCCC
GCGCCCCTCCCCATGCATTCGCGCTCGCCATTCCCGTCGTTGTTAAGATG
ATAGCTGCAGCGATGCTCGTCGAGAAGTGGGAGCCCGCGCACCGGCTGGT
GGCCTGCGCGGGGGCCGGGGCGCCGCGGCAGGCGTTGGCTCGGGCGCTGA
TCCCGGCGGCTACGGTGGCGGAGGCGTACGACGTAGCCACGCGCCTGATC
GAGGAGAATCGCTTGCAGTCCGAGTTTCCCGACTACCGTGAGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10473:2698..6142+

>mRNA_S-dermatodea_contig10473.333.1 ID=mRNA_S-dermatodea_contig10473.333.1|Name=mRNA_S-dermatodea_contig10473.333.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at S-dermatodea_contig10473:2698..6142+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTACGAAGCAAAGCAAGCACCCGTTCAGCAAGGTCAACCGCAAGCTCAC
CGCCGCGATGAAGGCGTTCCTGGCGCCTCAGAAACGGAACCCGGCCGCCC
ACCGAGCTATCGTAACCGCCTCCCTCAGCCTCCTGCGGAACTCCTGCGCC
GCCAGTGTTCCGTCAAAGCTATCCATGATGGCGGCGCACGCCCTGCTTCA
GGCGCTTAGCACGGCCAACGGCAACACCAACCCAGGCATAGTGCTCGGTG
GGGAGGGTTTCCCGGAGTCGCAGATAGCGGCGTTCTTGCTTGATGCGACG
AGGGTCGAACCGCCCCCTCCGCCAACGCCGCCCGTCGCCGTGCCTGCTCA
CTTGGCCGTTAAGGGTACGAAGCAAAGCAAGCACCCGTTCAGCAAGGTCA
ACCGCAAGCTCACCGCCGCGATGAAGGCGTTCCTGGCGCCTCAGAAACGG
AACCCGGCCGCCCACCGAGCTATCGTAACCGCCTCCCTCAGCCTCCTGCG
GAACTCCTGCGCCGCCAGTGTTCCGTCAAAGCTATCCATGATGGCGGCGC
ACGCCCTGCTTCAGGCGCTTAGCACGGCCAACGGCAACACCAACCCAGGC
ATAGTGCTCGGTGGGGAGGGTTTCCCGGAGTCGCAGATAGCGGCGTTCTT
GCTTGATGCGACGAGGGTCGAACCGCCCCCTCCGCCAACGCCGCCCGTCG
CCGTGCCTGCTCACTTGGCCGTTAAGATCATCTACACCTTTGGTGTTGGG
AAAGCCCGGGGGAACGGGCTGGAATGGGGTAGTCCCGAGGTCGCCGACTG
CCTCCGCGGCTCTGTCCGACGAGTGGCCGATAAGCTGAGGGAGCAGGGGG
ACTGGAAGGTGGTGTCAGAGCTGGTTGGGCACATGGAGACGCCACGAGGC
GTCGACGAGGCTGAGAGCGTGCTTGGGATGCAGCTCGGAGAGATCATCTA
CACCTTTGGTGTTGGGAAAGCCCGGGGGAACGGGCTGGAATGGGGTAGTC
CCGAGGTCGCCGACTGCCTCCGCGGCTCTGTCCGACGAGTGGCCGATAAG
CTGAGGGAGCAGGGGGACTGGAAGGTGGTGTCAGAGCTGGTTGGGCACAT
GGAGACGCCACGAGGCGTCGACGAGGCTGAGAGCGTGCTTGGGATGCAGC
TCGGAGAGATGATAGCTGCAGCGATGCTCGTCGAGAAGTGGGAGCCCGCG
CACCGGCTGGTGGCCTGCGCGGGGGCCGGGGCGCCGCGGCAGGCGTTGGC
TCGGGCGCTGATCCCGGCGGCTACGGTGGCGGAGGCGTACGACGTAGCCA
CGCGCCTGATCGAGGAGAATCGCTTGCAGTCCGAGTTTCCCGACTACCGT
GAGCTCATGATAGCTGCAGCGATGCTCGTCGAGAAGTGGGAGCCCGCGCA
CCGGCTGGTGGCCTGCGCGGGGGCCGGGGCGCCGCGGCAGGCGTTGGCTC
GGGCGCTGATCCCGGCGGCTACGGTGGCGGAGGCGTACGACGTAGCCACG
CGCCTGATCGAGGAGAATCGCTTGCAGTCCGAGTTTCCCGACTACCGTGA
GCTC
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