prot_S-dermatodea_contig10434.317.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10434.317.1
Unique Nameprot_S-dermatodea_contig10434.317.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length514
Homology
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BLAST of mRNA_S-dermatodea_contig10434.317.1 vs. uniprot
Match: D7FU17_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU17_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.520e-22
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:    1 ANWCNSVSESETYCCGFGGAASCTARGIDYSGPSQPCEIRLVTDGDGVTTCEGLSNESGNVD-DCDCEGL-LFTEAP 75
            A WC+ VS+S+TYCCGFG  ASC ARG+DY GPS PCE+RLVT  DG TTCEGL  ESGN+D DC    L LFTEAP
Sbjct:   62 AGWCSVVSDSDTYCCGFGAQASCIARGLDYDGPSTPCEVRLVTSDDGTTTCEGLEGESGNLDVDCXXXDLTLFTEAP 138
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BLAST of mRNA_S-dermatodea_contig10434.317.1 vs. uniprot
Match: A0A6H5JL77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL77_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-17
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 0 
Query:    1 ANWCNSVSESETYCCGFGGAASCTARGIDYSGPSQPCEIRLVTDGDGVTTCEGLSNESGNVD 62
            A WC  VSES+TYCCGFG  ASC AR ++YSG   PCE+RL+T  DG  TCEGLSN SGN+D
Sbjct:   62 AGWCTVVSESDTYCCGFGAQASCLARNLEYSGAELPCEVRLITSEDGTVTCEGLSNPSGNLD 123
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10434.317.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU17_ECTSI1.520e-2268.83Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5JL77_9PHAE2.670e-1766.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15124SELENOPROTEIN Wcoord: 218..325
NoneNo IPR availablePANTHERPTHR15124:SF17SELENOPROTEIN Vcoord: 218..325
coord: 126..231
NoneNo IPR availablePANTHERPTHR15124SELENOPROTEIN Wcoord: 153..257
coord: 126..231
NoneNo IPR availablePANTHERPTHR15124:SF17SELENOPROTEIN Vcoord: 153..257
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 487..511
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 512..513
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..486
NoneNo IPR availableTMHMMTMhelixcoord: 490..512

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10434contigS-dermatodea_contig10434:2765..4904 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10434.317.1mRNA_S-dermatodea_contig10434.317.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10434 2765..4904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10434.317.1 ID=prot_S-dermatodea_contig10434.317.1|Name=mRNA_S-dermatodea_contig10434.317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=514bp
ANWCNSVSESETYCCGFGGAASCTARGIDYSGPSQPCEIRLVTDGDGVTT
CEGLSNESGNVDDCDCEGLLFTEAPDTPSPTLGGVTVAPADTPAPAETTA
PADTTAPADTPAPADTPAPAETSAPVTTPAPADTPAPAETAAPADTPAPA
ETSSPLTTSAPADTPAPAETVAPADTPAPVETSAPADTLAPSETIAPSDT
PAPAETSAPAETPAPTEASTPAGTPAPAETPAPVETLAPSETVAPVETLA
PSETVAPVEETPVPSETPAPIETPAPSDTAAPVETPAPGDTAAPVETPAP
VETAAPAETPVPSETPAPSDTSAPEGATMAPVAATEPGETSAPADVTTPA
PLTPGVTSAPEATTPAPTTGSRGITFTSTPTTTMGSSAPTSMVLTTAPSS
TPTAMMSMAPTGAPTMMMSMAPSSAPTGAPTMSTGSPTGSPTAMPSAATR
GFESLAPTASPTEAATVTETPAPALVPRETSGVSTKAAAGMGGVLAASTC
VLAVAVGRFILGA*
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