mRNA_S-dermatodea_contig10434.317.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10434.317.1
Unique NamemRNA_S-dermatodea_contig10434.317.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10434.317.1 vs. uniprot
Match: D7FU17_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU17_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.520e-22
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 ANWCNSVSESETYCCGFGGAASCTARGIDYSGPSQPCEIRLVTDGDGVTTCEGLSNESGNVD-DCDCEGL-LFTEAP 225
            A WC+ VS+S+TYCCGFG  ASC ARG+DY GPS PCE+RLVT  DG TTCEGL  ESGN+D DC    L LFTEAP
Sbjct:   62 AGWCSVVSDSDTYCCGFGAQASCIARGLDYDGPSTPCEVRLVTSDDGTTTCEGLEGESGNLDVDCXXXDLTLFTEAP 138
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BLAST of mRNA_S-dermatodea_contig10434.317.1 vs. uniprot
Match: A0A6H5JL77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL77_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.670e-17
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 ANWCNSVSESETYCCGFGGAASCTARGIDYSGPSQPCEIRLVTDGDGVTTCEGLSNESGNVD 186
            A WC  VSES+TYCCGFG  ASC AR ++YSG   PCE+RL+T  DG  TCEGLSN SGN+D
Sbjct:   62 AGWCTVVSESDTYCCGFGAQASCLARNLEYSGAELPCEVRLITSEDGTVTCEGLSNPSGNLD 123
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10434.317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU17_ECTSI1.520e-2268.83Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5JL77_9PHAE2.670e-1766.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10434contigS-dermatodea_contig10434:2765..4904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-27_001100.1
Exons3
Model size1542
Cds size1542
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10434.317.1prot_S-dermatodea_contig10434.317.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10434 2765..4904 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.7157123-CDS-S-dermatodea_contig10434:2764..33341622924157.7157123-CDS-S-dermatodea_contig10434:2764..3334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10434 2765..3334 -
1694079057.1497302-CDS-S-dermatodea_contig10434:2764..33341694079057.1497302-CDS-S-dermatodea_contig10434:2764..3334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10434 2765..3334 -
1622924157.7259867-CDS-S-dermatodea_contig10434:3514..42841622924157.7259867-CDS-S-dermatodea_contig10434:3514..4284Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10434 3515..4284 -
1694079057.1595633-CDS-S-dermatodea_contig10434:3514..42841694079057.1595633-CDS-S-dermatodea_contig10434:3514..4284Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10434 3515..4284 -
1622924157.7343614-CDS-S-dermatodea_contig10434:4702..49041622924157.7343614-CDS-S-dermatodea_contig10434:4702..4904Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10434 4703..4904 -
1694079057.1721065-CDS-S-dermatodea_contig10434:4702..49041694079057.1721065-CDS-S-dermatodea_contig10434:4702..4904Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10434 4703..4904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10434.317.1

>prot_S-dermatodea_contig10434.317.1 ID=prot_S-dermatodea_contig10434.317.1|Name=mRNA_S-dermatodea_contig10434.317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=514bp
ANWCNSVSESETYCCGFGGAASCTARGIDYSGPSQPCEIRLVTDGDGVTT
CEGLSNESGNVDDCDCEGLLFTEAPDTPSPTLGGVTVAPADTPAPAETTA
PADTTAPADTPAPADTPAPAETSAPVTTPAPADTPAPAETAAPADTPAPA
ETSSPLTTSAPADTPAPAETVAPADTPAPVETSAPADTLAPSETIAPSDT
PAPAETSAPAETPAPTEASTPAGTPAPAETPAPVETLAPSETVAPVETLA
PSETVAPVEETPVPSETPAPIETPAPSDTAAPVETPAPGDTAAPVETPAP
VETAAPAETPVPSETPAPSDTSAPEGATMAPVAATEPGETSAPADVTTPA
PLTPGVTSAPEATTPAPTTGSRGITFTSTPTTTMGSSAPTSMVLTTAPSS
TPTAMMSMAPTGAPTMMMSMAPSSAPTGAPTMSTGSPTGSPTAMPSAATR
GFESLAPTASPTEAATVTETPAPALVPRETSGVSTKAAAGMGGVLAASTC
VLAVAVGRFILGA*
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mRNA from alignment at S-dermatodea_contig10434:2765..4904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10434.317.1 ID=mRNA_S-dermatodea_contig10434.317.1|Name=mRNA_S-dermatodea_contig10434.317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2140bp|location=Sequence derived from alignment at S-dermatodea_contig10434:2765..4904- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAACTGGTGCAACAGCGTGTCGGAGAGCGAGACTTACTGCTGCGGCTT
CGGCGGCGCGGCGTCTTGCACCGCCCGCGGCATAGACTACAGCGGTCCCA
GCCAGCCGTGTGAAATTCGGCTCGTCACGGATGGCGATGGCGTGACGACG
TGCGAGGGCCTTTCCAATGAAAGCGGGAACGTGGATGACTGCGACTGCGA
AGGTGCGTGCGTGTGTGTCGCCGACATACTCGTGTCAATATTTTGTGTCG
GTGTGTGCTTTGGTGGGGAGAAGCCGGCAGGCAGTACCTGAAGGCGCGCG
GGAGAGATGTTAGTTGGACCGGGCCGGCGGTTGTGTACTGCACTTCGACC
CGCCGGAGAGCGCGGAGTTGGGGGCGGGGGAGAGGAGCGTCCGGTGTGCT
GCGGTGCGTGCGCACGCGTAGCGTGCTTGTGGTGCACCCTGTTGAATGGG
AGCCGAGCACGCCACGCGCGCAACCCTCCACTACCGCGCGCGTGCGTTAT
CTCTTCTCTCTCTCTTTTTTATCCCCGTGAAGCTTAACTTTTTGTCTGCC
CGCCCCTCTCTCTCTCCTCTTTCTCTCCTTCCCTCCTCGCCCTGTTCACC
TTGGTGTTATTTATGTACAGGCCTTCTTTTCACCGAGGCCCCCGACACTC
CCTCCCCCACTCTGGGAGGCGTCACCGTAGCCCCCGCCGATACGCCCGCG
CCCGCCGAAACCACCGCTCCCGCAGACACCACCGCTCCCGCAGACACCCC
CGCCCCCGCAGACACCCCTGCCCCCGCTGAGACCTCTGCTCCGGTCACTA
CGCCGGCACCGGCCGACACGCCTGCGCCAGCCGAAACTGCCGCCCCTGCA
GACACCCCTGCCCCCGCTGAGACCTCTTCTCCGCTCACTACGTCGGCACC
GGCTGACACGCCTGCGCCAGCTGAAACTGTCGCCCCTGCAGACACCCCTG
CCCCCGTTGAAACCTCTGCTCCGGCAGACACCCTCGCCCCCTCTGAAACC
ATAGCCCCTTCAGACACCCCCGCCCCCGCTGAAACCTCGGCCCCGGCAGA
AACCCCTGCACCCACTGAAGCGTCAACGCCCGCAGGTACCCCTGCTCCCG
CAGAAACGCCTGCACCCGTTGAAACCCTGGCACCCAGTGAAACCGTCGCA
CCTGTCGAAACCCTGGCACCCAGTGAAACCGTAGCGCCTGTTGAAGAAAC
CCCGGTACCTAGTGAAACCCCGGCACCCATTGAAACCCCGGCACCGAGTG
ATACCGCTGCGCCCGTTGAAACCCCGGCACCCGGTGATACCGCTGCGCCC
GTGGAAACCCCGGCACCCGTAGAAACCGCTGCGCCGGCCGAAACCCCCGT
GCCCTCCGAGACCCCTGCGCCTTCAGATACCTCTGCTCCCGTAGTTACCG
ACTCCCCCGAAACTTCCGCCCCCGCAGAATCCACGCCTTCCCCCGTAACC
GACTCCCCCGAAACTCTTGCCCCCGCAGACTTCACGCCTGCTCCGGCGAC
CTCCGCTCCGGCCACAACCGCGGCACCCGATGCCACCACCGCGCCCGACA
CGACGCCCGCGCCGACGGAGGAAGGAGCTACCATGGCGCCGGTTGCCGCG
ACGGAGCCCGGGGAGACGTCCGCGCCTGCCGATGTTACCACCCCCGCCCC
GCTCACGCCTGGCGTTACGAGTGCTCCCGAAGCTACTACCCCCGCCCCGA
CCACCGGCAGCCGCGGCATCACTTTCACGTCGACGCCCACGACGACCATG
GGGTCTTCGGCGCCCACGTCGATGGTGCTGACCACCGCGCCCTCTTCCAC
GCCTACCGCCATGATGTCGATGGCGCCCACCGGCGCGCCCACGATGATGA
TGAGCATGGCCCCGTCATCGGCCCCGACCGGGGCCCCTACCATGTCGACT
GGGTCGCCGACTGGATCGCCCACGGCGATGCCATCCGCCGCGACGCGAGG
GTTCGAGAGCCTCGCACCCACCGCATCTCCCACCGAGGCGGCGACGGTGA
CCGAAACGCCGGCGCCGGCGCTCGTCCCTCGCGAGACGAGCGGGGTGTCG
ACCAAGGCCGCGGCGGGCATGGGTGGCGTCTTGGCCGCGTCGACGTGCGT
GCTGGCGGTGGCTGTGGGCCGATTCATCCTGGGGGCTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10434:2765..4904-

>mRNA_S-dermatodea_contig10434.317.1 ID=mRNA_S-dermatodea_contig10434.317.1|Name=mRNA_S-dermatodea_contig10434.317.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3084bp|location=Sequence derived from alignment at S-dermatodea_contig10434:2765..4904- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGAACTGGTGCAACAGCGTGTCGGAGAGCGAGACTTACTGCTGCGGCTT
CGGCGGCGCGGCGTCTTGCACCGCCCGCGGCATAGACTACAGCGGTCCCA
GCCAGCCGTGTGAAATTCGGCTCGTCACGGATGGCGATGGCGTGACGACG
TGCGAGGGCCTTTCCAATGAAAGCGGGAACGTGGATGACTGCGACTGCGA
AGGCGAACTGGTGCAACAGCGTGTCGGAGAGCGAGACTTACTGCTGCGGC
TTCGGCGGCGCGGCGTCTTGCACCGCCCGCGGCATAGACTACAGCGGTCC
CAGCCAGCCGTGTGAAATTCGGCTCGTCACGGATGGCGATGGCGTGACGA
CGTGCGAGGGCCTTTCCAATGAAAGCGGGAACGTGGATGACTGCGACTGC
GAAGGCCTTCTTTTCACCGAGGCCCCCGACACTCCCTCCCCCACTCTGGG
AGGCGTCACCGTAGCCCCCGCCGATACGCCCGCGCCCGCCGAAACCACCG
CTCCCGCAGACACCACCGCTCCCGCAGACACCCCCGCCCCCGCAGACACC
CCTGCCCCCGCTGAGACCTCTGCTCCGGTCACTACGCCGGCACCGGCCGA
CACGCCTGCGCCAGCCGAAACTGCCGCCCCTGCAGACACCCCTGCCCCCG
CTGAGACCTCTTCTCCGCTCACTACGTCGGCACCGGCTGACACGCCTGCG
CCAGCTGAAACTGTCGCCCCTGCAGACACCCCTGCCCCCGTTGAAACCTC
TGCTCCGGCAGACACCCTCGCCCCCTCTGAAACCATAGCCCCTTCAGACA
CCCCCGCCCCCGCTGAAACCTCGGCCCCGGCAGAAACCCCTGCACCCACT
GAAGCGTCAACGCCCGCAGGTACCCCTGCTCCCGCAGAAACGCCTGCACC
CGTTGAAACCCTGGCACCCAGTGAAACCGTCGCACCTGTCGAAACCCTGG
CACCCAGTGAAACCGTAGCGCCTGTTGAAGAAACCCCGGTACCTAGTGAA
ACCCCGGCACCCATTGAAACCCCGGCACCGAGTGATACCGCTGCGCCCGT
TGAAACCCCGGCACCCGGTGATACCGCTGCGCCCGTGGAAACCCCGGCAC
CCGTAGAAACCGCTGCGCCGGCCGAAACCCCCGTGCCCTCCGAGACCCCT
GCGCCTTCAGATACCTCTGCTCCCGCCTTCTTTTCACCGAGGCCCCCGAC
ACTCCCTCCCCCACTCTGGGAGGCGTCACCGTAGCCCCCGCCGATACGCC
CGCGCCCGCCGAAACCACCGCTCCCGCAGACACCACCGCTCCCGCAGACA
CCCCCGCCCCCGCAGACACCCCTGCCCCCGCTGAGACCTCTGCTCCGGTC
ACTACGCCGGCACCGGCCGACACGCCTGCGCCAGCCGAAACTGCCGCCCC
TGCAGACACCCCTGCCCCCGCTGAGACCTCTTCTCCGCTCACTACGTCGG
CACCGGCTGACACGCCTGCGCCAGCTGAAACTGTCGCCCCTGCAGACACC
CCTGCCCCCGTTGAAACCTCTGCTCCGGCAGACACCCTCGCCCCCTCTGA
AACCATAGCCCCTTCAGACACCCCCGCCCCCGCTGAAACCTCGGCCCCGG
CAGAAACCCCTGCACCCACTGAAGCGTCAACGCCCGCAGGTACCCCTGCT
CCCGCAGAAACGCCTGCACCCGTTGAAACCCTGGCACCCAGTGAAACCGT
CGCACCTGTCGAAACCCTGGCACCCAGTGAAACCGTAGCGCCTGTTGAAG
AAACCCCGGTACCTAGTGAAACCCCGGCACCCATTGAAACCCCGGCACCG
AGTGATACCGCTGCGCCCGTTGAAACCCCGGCACCCGGTGATACCGCTGC
GCCCGTGGAAACCCCGGCACCCGTAGAAACCGCTGCGCCGGCCGAAACCC
CCGTGCCCTCCGAGACCCCTGCGCCTTCAGATACCTCTGCTCCCGAAGGA
GCTACCATGGCGCCGGTTGCCGCGACGGAGCCCGGGGAGACGTCCGCGCC
TGCCGATGTTACCACCCCCGCCCCGCTCACGCCTGGCGTTACGAGTGCTC
CCGAAGCTACTACCCCCGCCCCGACCACCGGCAGCCGCGGCATCACTTTC
ACGTCGACGCCCACGACGACCATGGGGTCTTCGGCGCCCACGTCGATGGT
GCTGACCACCGCGCCCTCTTCCACGCCTACCGCCATGATGTCGATGGCGC
CCACCGGCGCGCCCACGATGATGATGAGCATGGCCCCGTCATCGGCCCCG
ACCGGGGCCCCTACCATGTCGACTGGGTCGCCGACTGGATCGCCCACGGC
GATGCCATCCGCCGCGACGCGAGGGTTCGAGAGCCTCGCACCCACCGCAT
CTCCCACCGAGGCGGCGACGGTGACCGAAACGCCGGCGCCGGCGCTCGTC
CCTCGCGAGACGAGCGGGGTGTCGACCAAGGCCGCGGCGGGCATGGGTGG
CGTCTTGGCCGCGTCGACGTGCGTGCTGGCGGTGGCTGTGGGCCGATTCA
TCCTGGGGGCTTAGGAAGGAGCTACCATGGCGCCGGTTGCCGCGACGGAG
CCCGGGGAGACGTCCGCGCCTGCCGATGTTACCACCCCCGCCCCGCTCAC
GCCTGGCGTTACGAGTGCTCCCGAAGCTACTACCCCCGCCCCGACCACCG
GCAGCCGCGGCATCACTTTCACGTCGACGCCCACGACGACCATGGGGTCT
TCGGCGCCCACGTCGATGGTGCTGACCACCGCGCCCTCTTCCACGCCTAC
CGCCATGATGTCGATGGCGCCCACCGGCGCGCCCACGATGATGATGAGCA
TGGCCCCGTCATCGGCCCCGACCGGGGCCCCTACCATGTCGACTGGGTCG
CCGACTGGATCGCCCACGGCGATGCCATCCGCCGCGACGCGAGGGTTCGA
GAGCCTCGCACCCACCGCATCTCCCACCGAGGCGGCGACGGTGACCGAAA
CGCCGGCGCCGGCGCTCGTCCCTCGCGAGACGAGCGGGGTGTCGACCAAG
GCCGCGGCGGGCATGGGTGGCGTCTTGGCCGCGTCGACGTGCGTGCTGGC
GGTGGCTGTGGGCCGATTCATCCTGGGGGCTTAG
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