mRNA_S-dermatodea_contig10425.310.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10425.310.1
Unique NamemRNA_S-dermatodea_contig10425.310.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.390e-70
Identity = 116/127 (91.34%), Postives = 119/127 (93.70%), Query Frame = 1 
Query:    4 ESIKFGTCSLQSDKYICVCQGGELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKLEGCQV 384
            ESIKFGTCSLQSDKYICVCQGGELVIVDMTAGNAVKRWPISAEAAIMNPT KIVALR   QLQIFNLEAKSRLKSHTISEPIVFW+W   T+IALVTASAVFHWSM GDSGPQK+FNRDAKLEGCQV
Sbjct:   12 ESIKFGTCSLQSDKYICVCQGGELVIVDMTAGNAVKRWPISAEAAIMNPTQKIVALRAQGQLQIFNLEAKSRLKSHTISEPIVFWKWFDATTIALVTASAVFHWSMGGDSGPQKIFNRDAKLEGCQV 138
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.910e-56
Identity = 93/127 (73.23%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    4 ESIKFGTCSLQSDKYICVCQGGELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKLEGCQV 384
            E+IKFGTCSL+SDKYICVCQ GELVIVDM AGN V R PISAEAAIMNP SKIVALR A QLQIFNL+ K+R+K+HTIS+PI +WRW+ P++IALV+A+AV+HWSMEG   P K+F+RD KLEG Q+
Sbjct:   24 EAIKFGTCSLESDKYICVCQNGELVIVDMAAGNTVTRRPISAEAAIMNPVSKIVALRAAGQLQIFNLDTKARVKAHTISDPIQYWRWLDPSTIALVSATAVYHWSMEGADPPAKVFDRDGKLEGSQI 150
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A2P4YLB1_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLB1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.160e-44
Identity = 77/133 (57.89%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:    1 VESIKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKLE-GCQV 384
            ++ +KFGT +++SDK++CVC+       +VIVDM AGN V+R PI+AEAAIMNP SK++ALR   QLQIFN+E ++++KSH ++E +VFWRWI+  +IALVTASAVFHWS+EGDS P K+F+R A L  G Q+
Sbjct:   22 LDYVKFGTTTMESDKFVCVCEQVNGQASVVIVDMAAGNTVQRRPINAEAAIMNPVSKVIALRAENQLQIFNMELRAKMKSHLMNEAVVFWRWISVNTIALVTASAVFHWSIEGDSPPTKIFDRHANLSSGTQI 154
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A7S2V2C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C2_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.630e-44
Identity = 79/132 (59.85%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:    4 ESIKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKLE-GCQV 384
            ++IKFG CSL+SDK+ICVC+       +VIVD+   NAV R PISAEAAIMNP SKI+ALR    LQIFNLEA+S++KSH +++ +VFWRW+   ++A+VTA+AVFHWS+EGDSGP K+F+R A L  G Q+
Sbjct:   15 DAIKFGHCSLESDKFICVCETVNGQASVVIVDLQNNNAVTRKPISAEAAIMNPVSKIIALRAQGTLQIFNLEARSKMKSHALTDAVVFWRWVDTKTVAVVTATAVFHWSIEGDSGPVKVFDRHASLSTGNQI 146
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A067C3W3_SAPPC (Clathrin-link domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C3W3_SAPPC)

HSP 1 Score: 163 bits (412), Expect = 4.650e-44
Identity = 74/127 (58.27%), Postives = 102/127 (80.31%), Query Frame = 1 
Query:    1 VESIKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKL 369
            ++ +KFGTC+++SDK+I VC+       +VIVDM AGN V+R PI+AEAAIMNP +K++ALR   QLQIFN+E ++++KSH +++PIVFWRWITP +I +VTA+AV+HWS+EGDS P K F+R A L
Sbjct:   21 LDYVKFGTCAMESDKFITVCETVNGQANVVIVDMAAGNNVQRRPIAAEAAIMNPLTKVIALRAGSQLQIFNMELRAKMKSHQMTDPIVFWRWITPNTIGMVTATAVYHWSIEGDSAPAKQFDRHANL 147
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 163 bits (412), Expect = 4.750e-44
Identity = 76/133 (57.14%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:    1 VESIKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKL-EGCQV 384
            +E +KFGT +++SDK++CVC+       +VIVD+ AGN V+R PI+AEAAIMNP SK++ALR   QLQIFN+E ++++KSH ++EP+VFWRWI+  +IALVT SAV+HWS++GDS P KMF+R A L  G Q+
Sbjct:  453 LEYVKFGTTTMESDKFVCVCEQVNGQASVVIVDLAAGNQVQRRPINAEAAIMNPVSKVIALRSENQLQIFNMELRAKMKSHLMTEPVVFWRWISVNTIALVTGSAVYHWSLDGDSAPVKMFDRHASLGAGTQI 585
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A024U3J7_9STRA (Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024U3J7_9STRA)

HSP 1 Score: 162 bits (411), Expect = 6.430e-44
Identity = 76/127 (59.84%), Postives = 101/127 (79.53%), Query Frame = 1 
Query:    1 VESIKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKL 369
            +E +KFGTC+++SDK+I VC+       +VIVDM AGN V+R PI+AEAAIMNP +K++ALR   QLQIFN+E ++++K+H ++E IVFWRWITP +I LVTA AV+HWS+EGDS PQK F+R A L
Sbjct:   21 LEYVKFGTCAMESDKFITVCETVNGQANVVIVDMAAGNNVQRRPIAAEAAIMNPLTKVIALRAGPQLQIFNMELRAKMKTHQMTEAIVFWRWITPNTIGLVTAGAVYHWSIEGDSPPQKQFDRHANL 147
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.270e-43
Identity = 75/130 (57.69%), Postives = 103/130 (79.23%), Query Frame = 1 
Query:   10 IKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKL-EGCQV 384
            +KFGT +++SDK++CVC+       +VIVD+ AGN V+R PI+AEAAIMNP SK++ALR   QLQIFN+E ++++KSH ++EP+VFWRW++   IALVTASAV+HWS+EGDS P K+F+R A L  G Q+
Sbjct:   25 VKFGTTTMESDKFVCVCEQVNGQASVVIVDLAAGNTVQRRPINAEAAIMNPVSKVIALRSENQLQIFNMELRAKMKSHLMNEPVVFWRWVSVNLIALVTASAVYHWSIEGDSAPVKVFDRHANLGAGTQI 154
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 4.140e-43
Identity = 74/130 (56.92%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   10 IKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKL-EGCQV 384
            +KFGT +++SDK++CVC+       +VIVD++AGN+V+R PI+AEAAIMNP SK++ALR   QLQIFN+E ++++KSH ++EP+VFWRW++   IALVT SAV+HWS+EGDS P K+F+R A L  G Q+
Sbjct:   25 VKFGTTTMESDKFVCVCEQVNGQASVVIVDLSAGNSVQRRPINAEAAIMNPVSKVIALRSENQLQIFNMELRAKMKSHLMNEPVVFWRWVSVNLIALVTGSAVYHWSIEGDSAPVKVFDRHANLGPGTQI 154
[Close]
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Match: A0A7S4DKD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKD8_HETAK)

HSP 1 Score: 154 bits (388), Expect = 6.860e-43
Identity = 72/132 (54.55%), Postives = 102/132 (77.27%), Query Frame = 1 
Query:    4 ESIKFGTCSLQSDKYICVCQG----GELVIVDMTAGNAVKRWPISAEAAIMNPTSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTASAVFHWSMEGDSGPQKMFNRDAKLE-GCQV 384
            E+IKFG+C+++SD++I VC+       +V++D+  GN V R PISAEAAIMNPTSKI+ALR   Q+Q+FNLE++S++K+H ++E  VFWRWI+PT I LVT +AV+HW +EGD+ P K+F+R A L  G Q+
Sbjct:   24 EAIKFGSCTMESDRFITVCETVNGQSNVVMIDLQNGNQVTRRPISAEAAIMNPTSKIIALRAGTQVQMFNLESRSKIKAHAMTETCVFWRWISPTVIGLVTPTAVYHWPLEGDATPAKVFDRHASLAAGSQI 155
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10425.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI1.390e-7091.34Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA1.910e-5673.23Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A2P4YLB1_9STRA4.160e-4457.89Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho... [more]
A0A7S2V2C2_9STRA4.630e-4459.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067C3W3_SAPPC4.650e-4458.27Clathrin-link domain-containing protein n=1 Tax=Sa... [more]
A0A2D4BEN2_PYTIN4.750e-4457.14Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re... [more]
A0A024U3J7_9STRA6.430e-4459.84Clathrin heavy chain n=10 Tax=Saprolegniaceae TaxI... [more]
A0A5D6XWJ0_9STRA2.270e-4357.69Clathrin-link domain-containing protein n=1 Tax=Py... [more]
K3WLC2_GLOUD4.140e-4356.92Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ... [more]
A0A7S4DKD8_HETAK6.860e-4354.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10425contigS-dermatodea_contig10425:6072..7249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.0
Seed ortholog evalue2.4e-60
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.1955707-CDS-S-dermatodea_contig10425:6071..62521622924157.1955707-CDS-S-dermatodea_contig10425:6071..6252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10425 6072..6252 +
1694079056.732385-CDS-S-dermatodea_contig10425:6071..62521694079056.732385-CDS-S-dermatodea_contig10425:6071..6252Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10425 6072..6252 +
1622924157.2038362-CDS-S-dermatodea_contig10425:7046..72491622924157.2038362-CDS-S-dermatodea_contig10425:7046..7249Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10425 7047..7249 +
1694079056.7464569-CDS-S-dermatodea_contig10425:7046..72491694079056.7464569-CDS-S-dermatodea_contig10425:7046..7249Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10425 7047..7249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10425.310.1prot_S-dermatodea_contig10425.310.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10425 6072..7249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10425.310.1

>prot_S-dermatodea_contig10425.310.1 ID=prot_S-dermatodea_contig10425.310.1|Name=mRNA_S-dermatodea_contig10425.310.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
VESIKFGTCSLQSDKYICVCQGGELVIVDMTAGNAVKRWPISAEAAIMNP
TSKIVALRGAWQLQIFNLEAKSRLKSHTISEPIVFWRWITPTSIALVTAS
AVFHWSMEGDSGPQKMFNRDAKLEGCQV
back to top

mRNA from alignment at S-dermatodea_contig10425:6072..7249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10425.310.1 ID=mRNA_S-dermatodea_contig10425.310.1|Name=mRNA_S-dermatodea_contig10425.310.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1178bp|location=Sequence derived from alignment at S-dermatodea_contig10425:6072..7249+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGAGTCCATCAAGTTCGGGACCTGCTCCCTCCAGAGCGACAAGTACAT
CTGCGTCTGCCAGGGGGGAGAGCTGGTGATCGTGGACATGACGGCCGGAA
ATGCCGTGAAGCGCTGGCCCATCTCGGCGGAGGCGGCCATCATGAACCCG
ACGTCCAAGATCGTCGCCCTCCGAGGTGCGTGTCCGTTATGTCTCGTTCG
TGTGGGTGGGGGCGGCGGGGGTTGGTGGGGGTGTACTCATGGTAAACACA
TGTCGTATCCATGCGGACATAGACCACACGTCCCAACAATGCTGGGACGG
AGCGATAAGCCGGGTTTTCGCCGGCCAGGCTGCGTTCCACAAGGATGATA
CCAGCTGCTGGTCGTTATCCTTGCGTTTTCGGCGCCAAACGGTATGCCAT
GGGTTGGTTGGGCATGCCGGTCTGAGGATACCGGGACATGTGGCCATCCG
AAGACGTCGCCGTACCGAATCGGCAGCTATCTTCTTCAATCTATTAATAT
TAATAGTAAATAATACAGTTTTATAGTACAGTAGGACCCTAGAGCATCGT
ATATATAGTAGACCTCCACTGAGTTACCGGAGTCGGTTCCACAAGGTTCA
AGAGCGAGCGTTGGGATTCAACGTTGGAAACATGAGGCAAGCTGTCATGC
GCCTATGGAGGTTTACTTGCCGTACGCCCCCCCCCCCCCCCCCTACCCCC
GCGGCGGTAGCTTTACTCGGGGATAAGAAGTGGCCTGAGAAAGCGAGAAG
TGATGTAGACAGGATAGGAAAATCGTTTTTATGCCACTTTTGGCAGAGTA
GGAAGGAACGATCGGCCATTGGCGATATATCAATCCTGTGGGAACACTGC
TCCGTGCTCTCGAGGACGCATGGTCAATGGTCCATCCAACAGCTAAGGCA
TGCAAAACATGTGTACACCCCCCCGCCCCCGCCCCCGCTCCCGTTTCCTA
CCCCTCGCACACACAACAGCCCAAGGGCAGCTCCAGATCTTCAACCTCGA
GGCTAAGAGCCGACTGAAGAGCCACACCATCTCTGAGCCCATTGTGTTCT
GGAGGTGGATCACGCCCACGTCCATCGCCCTTGTTACGGCCTCGGCGGTG
TTCCACTGGTCGATGGAGGGGGACTCCGGGCCCCAGAAGATGTTCAACCG
CGACGCCAAGCTCGAGGGTTGCCAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10425:6072..7249+

>mRNA_S-dermatodea_contig10425.310.1 ID=mRNA_S-dermatodea_contig10425.310.1|Name=mRNA_S-dermatodea_contig10425.310.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig10425:6072..7249+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGAGTCCATCAAGTTCGGGACCTGCTCCCTCCAGAGCGACAAGTACAT
CTGCGTCTGCCAGGGGGGAGAGCTGGTGATCGTGGACATGACGGCCGGAA
ATGCCGTGAAGCGCTGGCCCATCTCGGCGGAGGCGGCCATCATGAACCCG
ACGTCCAAGATCGTCGCCCTCCGAGGTGCGTGTCGAGTCCATCAAGTTCG
GGACCTGCTCCCTCCAGAGCGACAAGTACATCTGCGTCTGCCAGGGGGGA
GAGCTGGTGATCGTGGACATGACGGCCGGAAATGCCGTGAAGCGCTGGCC
CATCTCGGCGGAGGCGGCCATCATGAACCCGACGTCCAAGATCGTCGCCC
TCCGAGGTGCGTGGCAGCTCCAGATCTTCAACCTCGAGGCTAAGAGCCGA
CTGAAGAGCCACACCATCTCTGAGCCCATTGTGTTCTGGAGGTGGATCAC
GCCCACGTCCATCGCCCTTGTTACGGCCTCGGCGGTGTTCCACTGGTCGA
TGGAGGGGGACTCCGGGCCCCAGAAGATGTTCAACCGCGACGCCAAGCTC
GAGGGTTGCCAGGTGGGCAGCTCCAGATCTTCAACCTCGAGGCTAAGAGC
CGACTGAAGAGCCACACCATCTCTGAGCCCATTGTGTTCTGGAGGTGGAT
CACGCCCACGTCCATCGCCCTTGTTACGGCCTCGGCGGTGTTCCACTGGT
CGATGGAGGGGGACTCCGGGCCCCAGAAGATGTTCAACCGCGACGCCAAG
CTCGAGGGTTGCCAGGTG
back to top