prot_S-dermatodea_contig10416.302.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10416.302.1
Unique Nameprot_S-dermatodea_contig10416.302.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length298
Homology
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: D7FJ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ42_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 1.660e-93
Identity = 247/298 (82.89%), Postives = 258/298 (86.58%), Query Frame = 0
Query:    1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARL-DKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKNKEDSSVYASLFGKKDVSNEHLFIATAGHRYNLG 297
            +VCAISNE LREPVAACELGYLY+KD LISGLL RDLNPAFNHIRGLKDIVEC+       LTPNP+FEKEDR+FDGPEPAR+MCPVTLQEMNGSHAFV+L+STGWVM+EKAT EVGIAGLQEEYGPF E DIV LAPTDEERE   R+LI KRE+ARL  KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  AVKKNKE S VYASLFGKKDVSNEHLFIATAGHRYNLG
Sbjct:   44 KVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECK-------LTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLITKREKARLAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGASAGPNSARLAGAAAEAVKKNKEASKVYASLFGKKDVSNEHLFIATAGHRYNLG 334          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A836CNB3_9STRA (Rtf2 RING-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB3_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.630e-42
Identity = 74/154 (48.05%), Postives = 109/154 (70.78%), Query Frame = 0
Query:    1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKR 154
            +VCA+SNERL+EP+  CELGYLY+KD ++S LL R L+P F H+RGLKD++E +       LT N A+++ D      E   YMCP+T QE  G + F ++ STGWV++++A  EVGI GLQ EYGPF + D++RLAP  +E++++++R+  +R
Sbjct:   42 KVCAVSNERLQEPIVVCELGYLYNKDAVLSALLDRTLDPTFAHLRGLKDLIEPK-------LTANRAYDESDS-----ESPPYMCPITFQEFTGRYPFSIIRSTGWVISDRAIAEVGIEGLQAEYGPFVQDDVMRLAPDKDEQQQLRQRMETRR 183          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A6V1S5E2_HETAK (Replication termination factor 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5E2_HETAK)

HSP 1 Score: 149 bits (376), Expect = 2.970e-39
Identity = 77/147 (52.38%), Postives = 103/147 (70.07%), Query Frame = 0
Query:    1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEK----EDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEG-DIVRLAPTDEE 142
            + CAISNE L+EPV ACELG LY+K+ + + LL++ LN +F HIRGLKD+VE +       LTPNP++E+    +D       PA+Y+CPVTL EMNGS  FV++  TGWV++++A  EVG   LQ EYGPF  G D+VRLAP +E+
Sbjct:   39 KTCAISNEVLQEPVVACELGNLYNKEAIFTCLLEKTLNQSFQHIRGLKDLVEVK-------LTPNPSYEEKGAEDDIKLKSELPAKYICPVTLIEMNGSQPFVVVWPTGWVLSDRALREVGAPALQAEYGPFRPGEDVVRLAPPEED 178          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: W7TG44_9STRA (Replication termination factor 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG44_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.080e-34
Identity = 71/169 (42.01%), Postives = 98/169 (57.99%), Query Frame = 0
Query:    1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGPEPA---------------------------RYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEE 142
            +VCA+S+ERLR+PV ACELG+LY+K+ ++  LL+  LNPAF HIRG+KD++ CR        T NP +  E  +    + A                           +Y+CPV   EMN    FV++ STGWV++E+A  EVG A LQ+EYGPF   D++RL P +EE
Sbjct:   41 RVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACR-------FTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEE 202          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A7S2RH24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH24_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.740e-26
Identity = 67/181 (37.02%), Postives = 104/181 (57.46%), Query Frame = 0
Query:    1 QVCAISNERLR--EPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSF-----------------DGPEPARYMCPVTLQEMNGSHAFVLLLSTGW---VMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARL 159
            + CA+SNE L+   PV A E+G L+SK+ ++  LL +++   F+HIRGL+D++ECR          NP++ +E +S                  D    + Y CPV   EMNG H FV+L  T     V++E+A  +VG   LQEEYGPF   D++++ P++EER ++  R+ A+RE+ R+
Sbjct:   43 RTCALSNEALQPGSPVVADEVGNLFSKEAVLKRLLDKNMPVEFSHIRGLRDVIECR-------FFANPSWSEEGKSSEAAGGTSSSGPGMQWSTDNDSLSPYSCPVASVEMNGRHPFVVLRGTTKPVNVLSERAIKQVGTDALQEEYGPFTGDDVIKVVPSEEERPQLVARMAARREEERI 216          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A8C4BZR0_9TELE (Replication termination factor 2 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4BZR0_9TELE)

HSP 1 Score: 104 bits (259), Expect = 1.830e-22
Identity = 70/169 (41.42%), Postives = 95/169 (56.21%), Query Frame = 0
Query:    3 CAISNERLREPVAACELGYLYSKDTLISGLL----KRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFE------KEDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARLDK 161
            CA+S E+LR PV ACELG LY+KD +I  LL    +R      +HIRG+KD+ E         LT NPA+E      K DR ++    A ++CPV   EMNG H F  LL+ G V +E+A  EV      +   PF +GD+V L  T EE EK++ R+  +R +A+  K
Sbjct:   37 CALSQEKLRRPVVACELGRLYNKDAVIEYLLDKSAERPNTEVASHIRGIKDVKELN-------LTDNPAWEGDRMNTKGDR-YEDVHCAMFICPVVGLEMNGKHKFCFLLTCGCVFSERALKEVKTEICHKCGDPFQDGDLVFLNGTKEEVEKLRERMGERRVKAKAAK 197          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: UPI001BF6D5BC (replication termination factor 2 n=2 Tax=Alosa TaxID=34772 RepID=UPI001BF6D5BC)

HSP 1 Score: 103 bits (257), Expect = 3.000e-22
Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 0
Query:    3 CAISNERLREPVAACELGYLYSKDTLISGLL----KRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRS----FDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQAR 158
            CA+S E+LR P+ AC+LG +Y+KD +I  LL    +R       HIRG+KD+ E         LT NPA++ E  +    ++    A ++CPV   EMNG H F  L + G V +E+A  EV      +   PF EGD+V L  T+EE EK+K R+  KR +A+
Sbjct:   37 CALSQEKLRRPIVACDLGRIYNKDAVIEYLLDKSAERPNTEVATHIRGIKDVKELN-------LTDNPAWDGESNTKGDRYEALHRAMFICPVVGLEMNGKHKFSFLQTCGCVFSERALKEVKTEICHKCGDPFQEGDLVVLNGTNEEVEKLKLRMEEKRAKAK 193          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: W5K003_ASTMX (Replication termination factor 2 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K003_ASTMX)

HSP 1 Score: 100 bits (249), Expect = 6.790e-22
Identity = 66/168 (39.29%), Postives = 91/168 (54.17%), Query Frame = 0
Query:    3 CAISNERLREPVAACELGYLYSKDTLISGLLKRDLN----PAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGP-----EPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARLDK 161
            CA+S E+LR P+ ACELG LY+KD +I  LL +           HIRG+KD+ E         LT NPA+E E R+  G        A ++CPV   EMNG H F  L + G V +++A  EV      +   PF E DIV L  T EE+EK+++ +  +R +A+  K
Sbjct:   37 CALSQEKLRRPIVACELGKLYNKDAVIEYLLDKSAERPNIEVAAHIRGIKDVKELN-------LTENPAWEGERRNTKGDCYEDMHCAMFICPVVGLEMNGKHKFCFLHTCGCVFSDRALREVKTEICHKCGDPFQEDDIVVLNGTKEEQEKLQKTMEERRAKAKTGK 197          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A8J4U425_CLAMG (Replication termination factor 2 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4U425_CLAMG)

HSP 1 Score: 100 bits (249), Expect = 9.210e-22
Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 0
Query:    3 CAISNERLREPVAACELGYLYSKDTLISGLL----KRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGP-----EPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQAR 158
            C++S E+LR P+ ACELG +Y+KD +I  LL    +R       HIRG+KD+ E         LT NPA+E E R+  G        A ++CPV   EMNG H F  LL+ G V +E+A  EV      +   PF E DIV L    EE+EK+++ +  +R +A+
Sbjct:   37 CSLSQEKLRRPIVACELGRVYNKDAIIEYLLDKSAERPNTEVVAHIRGIKDVKELN-------LTDNPAWEGERRNAKGDCYEDMHCAMFICPVVGLEMNGKHKFCYLLTCGCVFSERALKEVKTEICHKCGDPFQEDDIVMLNCNREEQEKLQKAMEERRAKAK 194          
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: UPI001458FAFF (replication termination factor 2-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FAFF)

HSP 1 Score: 102 bits (254), Expect = 1.190e-21
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    3 CAISNERLREPVAACELGYLYSKDTLISGLLKR---DLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEK-EDRSFDG---PEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARLDK 161
            CAI+ E LR+P+ ACELG LY+K+ ++  LL R   +   +F+H+RG KD+ E         LT NPA+EK ++   DG      A Y+CPV   EMNG H F +L   G V++++A  EV      +   PF+  DIV L  T+EE +++ +R+ A+R QA+L+K
Sbjct:   37 CAITQEPLRQPIMACELGKLYNKECVLELLLDRTKFECASSFSHLRGFKDLKELN-------LTENPAYEKPKNEKGDGYIDTNIAPYICPVVGIEMNGKHRFSVLWKCGCVLSDRANKEVKGQICHKCGAPFSPEDIVILNGTEEEVDELYKRMEARRLQAKLEK 195          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ42_ECTSI1.660e-9382.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNB3_9STRA2.630e-4248.05Rtf2 RING-finger-domain-containing protein n=1 Tax... [more]
A0A6V1S5E2_HETAK2.970e-3952.38Replication termination factor 2 n=1 Tax=Heterosig... [more]
W7TG44_9STRA6.080e-3442.01Replication termination factor 2 n=3 Tax=Monodopsi... [more]
A0A7S2RH24_9STRA3.740e-2637.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8C4BZR0_9TELE1.830e-2241.42Replication termination factor 2 n=2 Tax=Denticeps... [more]
UPI001BF6D5BC3.000e-2239.63replication termination factor 2 n=2 Tax=Alosa Tax... [more]
W5K003_ASTMX6.790e-2239.29Replication termination factor 2 n=2 Tax=Astyanax ... [more]
A0A8J4U425_CLAMG9.210e-2239.39Replication termination factor 2 n=1 Tax=Clarias m... [more]
UPI001458FAFF1.190e-2140.36replication termination factor 2-like isoform X1 n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027799Replication termination factor 2, RING-fingerPFAMPF04641Rtf2coord: 2..276
e-value: 5.1E-42
score: 144.0
IPR006735Replication termination factor 2PANTHERPTHR12775PROTEIN C20ORF43 HOMOLOGcoord: 2..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10416contigS-dermatodea_contig10416:1388..3510 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10416.302.1mRNA_S-dermatodea_contig10416.302.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10416 1388..3510 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10416.302.1 ID=prot_S-dermatodea_contig10416.302.1|Name=mRNA_S-dermatodea_contig10416.302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=298bp
QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDI
VECRRVLAHILLTPNPAFEKEDRSFDGPEPARYMCPVTLQEMNGSHAFVL
LLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRL
IAKREQARLDKKSSKRSARREKKASSLGASSSCSSSTPAAPSSKDDGKAG
EAGGGSRPGDEAANDATFERKKSKRRRRAERDEVAAAVVAGGGPSAGPSS
SRVAGAAAEAVKKNKEDSSVYASLFGKKDVSNEHLFIATAGHRYNLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027799Rtf2_RING-finger
IPR006735Rtf2