mRNA_S-dermatodea_contig10416.302.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: D7FJ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ42_ECTSI) HSP 1 Score: 289 bits (739), Expect = 1.660e-93 Identity = 247/298 (82.89%), Postives = 258/298 (86.58%), Query Frame = 1
Query: 1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARL-DKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKKNKEDSSVYASLFGKKDVSNEHLFIATAGHRYNLG 891
+VCAISNE LREPVAACELGYLY+KD LISGLL RDLNPAFNHIRGLKDIVEC+ LTPNP+FEKEDR+FDGPEPAR+MCPVTLQEMNGSHAFV+L+STGWVM+EKAT EVGIAGLQEEYGPF E DIV LAPTDEERE R+LI KRE+ARL KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVKKNKE S VYASLFGKKDVSNEHLFIATAGHRYNLG
Sbjct: 44 KVCAISNEVLREPVAACELGYLYNKDVLISGLLNRDLNPAFNHIRGLKDIVECK-------LTPNPSFEKEDRAFDGPEPARFMCPVTLQEMNGSHAFVVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLITKREKARLAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGASAGPNSARLAGAAAEAVKKNKEASKVYASLFGKKDVSNEHLFIATAGHRYNLG 334
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A836CNB3_9STRA (Rtf2 RING-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB3_9STRA) HSP 1 Score: 156 bits (395), Expect = 2.630e-42 Identity = 74/154 (48.05%), Postives = 109/154 (70.78%), Query Frame = 1
Query: 1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKR 462
+VCA+SNERL+EP+ CELGYLY+KD ++S LL R L+P F H+RGLKD++E + LT N A+++ D E YMCP+T QE G + F ++ STGWV++++A EVGI GLQ EYGPF + D++RLAP +E++++++R+ +R
Sbjct: 42 KVCAVSNERLQEPIVVCELGYLYNKDAVLSALLDRTLDPTFAHLRGLKDLIEPK-------LTANRAYDESDS-----ESPPYMCPITFQEFTGRYPFSIIRSTGWVISDRAIAEVGIEGLQAEYGPFVQDDVMRLAPDKDEQQQLRQRMETRR 183
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A6V1S5E2_HETAK (Replication termination factor 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5E2_HETAK) HSP 1 Score: 149 bits (376), Expect = 2.970e-39 Identity = 77/147 (52.38%), Postives = 103/147 (70.07%), Query Frame = 1
Query: 1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEK----EDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEG-DIVRLAPTDEE 426
+ CAISNE L+EPV ACELG LY+K+ + + LL++ LN +F HIRGLKD+VE + LTPNP++E+ +D PA+Y+CPVTL EMNGS FV++ TGWV++++A EVG LQ EYGPF G D+VRLAP +E+
Sbjct: 39 KTCAISNEVLQEPVVACELGNLYNKEAIFTCLLEKTLNQSFQHIRGLKDLVEVK-------LTPNPSYEEKGAEDDIKLKSELPAKYICPVTLIEMNGSQPFVVVWPTGWVLSDRALREVGAPALQAEYGPFRPGEDVVRLAPPEED 178
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: W7TG44_9STRA (Replication termination factor 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG44_9STRA) HSP 1 Score: 135 bits (340), Expect = 6.080e-34 Identity = 71/169 (42.01%), Postives = 98/169 (57.99%), Query Frame = 1
Query: 1 QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGPEPA---------------------------RYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEE 426
+VCA+S+ERLR+PV ACELG+LY+K+ ++ LL+ LNPAF HIRG+KD++ CR T NP + E + + A +Y+CPV EMN FV++ STGWV++E+A EVG A LQ+EYGPF D++RL P +EE
Sbjct: 41 RVCAVSSERLRDPVVACELGHLYNKEAVLLALLEHTLNPAFAHIRGMKDLIACR-------FTINPNWTDETAAQASAQEAWAANEAKGEGTNAGTMVGSFAEEGAVSKYICPVARVEMNAKQPFVVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEE 202
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A7S2RH24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH24_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.740e-26 Identity = 67/181 (37.02%), Postives = 104/181 (57.46%), Query Frame = 1
Query: 1 QVCAISNERLR--EPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSF-----------------DGPEPARYMCPVTLQEMNGSHAFVLLLSTGW---VMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARL 477
+ CA+SNE L+ PV A E+G L+SK+ ++ LL +++ F+HIRGL+D++ECR NP++ +E +S D + Y CPV EMNG H FV+L T V++E+A +VG LQEEYGPF D++++ P++EER ++ R+ A+RE+ R+
Sbjct: 43 RTCALSNEALQPGSPVVADEVGNLFSKEAVLKRLLDKNMPVEFSHIRGLRDVIECR-------FFANPSWSEEGKSSEAAGGTSSSGPGMQWSTDNDSLSPYSCPVASVEMNGRHPFVVLRGTTKPVNVLSERAIKQVGTDALQEEYGPFTGDDVIKVVPSEEERPQLVARMAARREEERI 216
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A8C4BZR0_9TELE (Replication termination factor 2 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4BZR0_9TELE) HSP 1 Score: 104 bits (259), Expect = 1.830e-22 Identity = 70/169 (41.42%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 7 CAISNERLREPVAACELGYLYSKDTLISGLL----KRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFE------KEDRSFDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARLDK 483
CA+S E+LR PV ACELG LY+KD +I LL +R +HIRG+KD+ E LT NPA+E K DR ++ A ++CPV EMNG H F LL+ G V +E+A EV + PF +GD+V L T EE EK++ R+ +R +A+ K
Sbjct: 37 CALSQEKLRRPVVACELGRLYNKDAVIEYLLDKSAERPNTEVASHIRGIKDVKELN-------LTDNPAWEGDRMNTKGDR-YEDVHCAMFICPVVGLEMNGKHKFCFLLTCGCVFSERALKEVKTEICHKCGDPFQDGDLVFLNGTKEEVEKLRERMGERRVKAKAAK 197
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: UPI001BF6D5BC (replication termination factor 2 n=2 Tax=Alosa TaxID=34772 RepID=UPI001BF6D5BC) HSP 1 Score: 103 bits (257), Expect = 3.000e-22 Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 1
Query: 7 CAISNERLREPVAACELGYLYSKDTLISGLL----KRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRS----FDGPEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQAR 474
CA+S E+LR P+ AC+LG +Y+KD +I LL +R HIRG+KD+ E LT NPA++ E + ++ A ++CPV EMNG H F L + G V +E+A EV + PF EGD+V L T+EE EK+K R+ KR +A+
Sbjct: 37 CALSQEKLRRPIVACDLGRIYNKDAVIEYLLDKSAERPNTEVATHIRGIKDVKELN-------LTDNPAWDGESNTKGDRYEALHRAMFICPVVGLEMNGKHKFSFLQTCGCVFSERALKEVKTEICHKCGDPFQEGDLVVLNGTNEEVEKLKLRMEEKRAKAK 193
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: W5K003_ASTMX (Replication termination factor 2 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K003_ASTMX) HSP 1 Score: 100 bits (249), Expect = 6.790e-22 Identity = 66/168 (39.29%), Postives = 91/168 (54.17%), Query Frame = 1
Query: 7 CAISNERLREPVAACELGYLYSKDTLISGLLKRDLN----PAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGP-----EPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARLDK 483
CA+S E+LR P+ ACELG LY+KD +I LL + HIRG+KD+ E LT NPA+E E R+ G A ++CPV EMNG H F L + G V +++A EV + PF E DIV L T EE+EK+++ + +R +A+ K
Sbjct: 37 CALSQEKLRRPIVACELGKLYNKDAVIEYLLDKSAERPNIEVAAHIRGIKDVKELN-------LTENPAWEGERRNTKGDCYEDMHCAMFICPVVGLEMNGKHKFCFLHTCGCVFSDRALREVKTEICHKCGDPFQEDDIVVLNGTKEEQEKLQKTMEERRAKAKTGK 197
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: A0A8J4U425_CLAMG (Replication termination factor 2 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4U425_CLAMG) HSP 1 Score: 100 bits (249), Expect = 9.210e-22 Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 1
Query: 7 CAISNERLREPVAACELGYLYSKDTLISGLL----KRDLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEKEDRSFDGP-----EPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQAR 474
C++S E+LR P+ ACELG +Y+KD +I LL +R HIRG+KD+ E LT NPA+E E R+ G A ++CPV EMNG H F LL+ G V +E+A EV + PF E DIV L EE+EK+++ + +R +A+
Sbjct: 37 CSLSQEKLRRPIVACELGRVYNKDAIIEYLLDKSAERPNTEVVAHIRGIKDVKELN-------LTDNPAWEGERRNAKGDCYEDMHCAMFICPVVGLEMNGKHKFCYLLTCGCVFSERALKEVKTEICHKCGDPFQEDDIVMLNCNREEQEKLQKAMEERRAKAK 194
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Match: UPI001458FAFF (replication termination factor 2-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI001458FAFF) HSP 1 Score: 102 bits (254), Expect = 1.190e-21 Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = 1
Query: 7 CAISNERLREPVAACELGYLYSKDTLISGLLKR---DLNPAFNHIRGLKDIVECRRVLAHILLTPNPAFEK-EDRSFDG---PEPARYMCPVTLQEMNGSHAFVLLLSTGWVMAEKATTEVGIAGLQEEYGPFAEGDIVRLAPTDEEREKMKRRLIAKREQARLDK 483
CAI+ E LR+P+ ACELG LY+K+ ++ LL R + +F+H+RG KD+ E LT NPA+EK ++ DG A Y+CPV EMNG H F +L G V++++A EV + PF+ DIV L T+EE +++ +R+ A+R QA+L+K
Sbjct: 37 CAITQEPLRQPIMACELGKLYNKECVLELLLDRTKFECASSFSHLRGFKDLKELN-------LTENPAYEKPKNEKGDGYIDTNIAPYICPVVGIEMNGKHRFSVLWKCGCVLSDRANKEVKGQICHKCGAPFSPEDIVILNGTEEEVDELYKRMEARRLQAKLEK 195 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10416.302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10416.302.1 >prot_S-dermatodea_contig10416.302.1 ID=prot_S-dermatodea_contig10416.302.1|Name=mRNA_S-dermatodea_contig10416.302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=298bp QVCAISNERLREPVAACELGYLYSKDTLISGLLKRDLNPAFNHIRGLKDIback to top mRNA from alignment at S-dermatodea_contig10416:1388..3510- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10416.302.1 ID=mRNA_S-dermatodea_contig10416.302.1|Name=mRNA_S-dermatodea_contig10416.302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2123bp|location=Sequence derived from alignment at S-dermatodea_contig10416:1388..3510- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10416:1388..3510- >mRNA_S-dermatodea_contig10416.302.1 ID=mRNA_S-dermatodea_contig10416.302.1|Name=mRNA_S-dermatodea_contig10416.302.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at S-dermatodea_contig10416:1388..3510- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |