prot_S-dermatodea_contig13721.2142.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig13721.2142.1
Unique Nameprot_S-dermatodea_contig13721.2142.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length108
Homology
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: D8LJ02_ECTSI (Polyadenylate binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ02_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.610e-56
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0
Query:    6 EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVSGGG 107
            EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDI SVILRVKHIG+D+RTWAFVEYG  EMVEPAIAGS +LELGG PCTVEARKSTPTPR   GGG
Sbjct:  220 EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDITSVILRVKHIGDDIRTWAFVEYGAPEMVEPAIAGSESLELGGVPCTVEARKSTPTPRSEYGGG 321          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1TZR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZR2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.510e-12
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query:   11 RVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGED-------VRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTP 98
            R  PV ENS+YI+ F   T +D IR  F ++G+I S+I RVK   ++        RTWAFVEY   E  + A+  ++   L G   TVE R S P
Sbjct:  195 REGPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQP 289          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1TZM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZM3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.870e-12
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 0
Query:   11 RVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGED-------VRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTP 98
            R  PV ENS+YI+ F   T +D IR  F ++G+I S+I RVK   ++        RTWAFVEY   E  + A+  ++   L G   TVE R S P
Sbjct:  202 REGPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQP 296          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A3M1M679_9BACT (RNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1M679_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.930e-7
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0
Query:   19 SVYIKGFPDTTTEDDIRAEFSQYGDIVSV-ILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV-EARKSTPTPRLVSGGG 107
            ++Y+       TEDD+R EFSQ+G++ SV I+  +  G   R +AFVE    +  + AI  ++  E+ G   TV EAR  T  PR   GGG
Sbjct:    3 NIYVGNLSFRATEDDLRDEFSQHGEVSSVNIITDRETGRS-RGFAFVEMPNADEAQAAIEATNGKEIAGRGVTVNEARPRTDRPRGGGGGG 92          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A061D5M8_BABBI (Polyadenylate-binding protein n=2 Tax=Babesia TaxID=5864 RepID=A0A061D5M8_BABBI)

HSP 1 Score: 57.0 bits (136), Expect = 3.480e-7
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   19 SVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGG 86
            ++Y++ FPDT TEDD+R  FS+YG+I S++L+    G   R +AFV Y    M + A+   + ++L G
Sbjct:  197 NLYVRNFPDTWTEDDLRETFSKYGEITSMLLKTDDKG---RRFAFVNYSETSMAKAAMESENGVKLEG 261          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2V0PIR1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PIR1_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 2.190e-6
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 0
Query:   13 PPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSV-ILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEAR 94
            P    +++Y+   P  TTE  + A FS YG+IVS+ +++   IG+ V+T+AF+++  VE    AIA      L G P  +E +
Sbjct:   19 PSGHHSNLYVSNLPHETTERQLEALFSPYGEIVSLRLVKASRIGQSVKTFAFIKFAAVEEALEAIASLHCSPLCGAPGPLEVK 101          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2G4G4B3_9BACT (RNA-binding protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4G4B3_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 6.080e-6
Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 0
Query:   17 ENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVSGGG 107
            EN +++   P   TE DIRA FSQ G++ SV + +       R +AFV  G  +  + AIA +  ++  G P  V   +  P     +GGG
Sbjct:    2 ENKLFVGNLPWAATESDIRAHFSQAGEVTSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVAR--PREERPAGGG 90          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2A2RQ55_9BACT (RRM domain-containing protein n=5 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2A2RQ55_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 6.940e-6
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 0
Query:   17 ENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV------EARKSTPTPRLVSGG 106
            EN +++   P   TE DIRA FSQ G++VSV + +       R +AFV  G  +  + AIA +  ++  G P  V      E R S    R  SGG
Sbjct:    2 ENKLFVGNLPWAATESDIRAHFSQAGEVVSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVARPREERPSFGGDRPRSGG 97          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7C5GD81_9GAMM (RNA-binding protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5GD81_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 7.020e-6
Identity = 29/90 (32.22%), Postives = 45/90 (50.00%), Query Frame = 0
Query:   19 SVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV-EARKSTPTPRLVSGGG 107
            ++Y+   P +TTEDD+R  F++YG + SV +         + + FVE       + AI G +   +GG    V +AR  +  PR   GGG
Sbjct:    2 NIYVGNLPYSTTEDDLRGMFAEYGVVESVSIIEDRFTGQSKGFGFVEMPNNSEADQAIKGLNEASVGGRRLKVNQARPRSDRPRRAGGGG 91          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1A933_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A933_NOCSC)

HSP 1 Score: 52.8 bits (125), Expect = 7.180e-6
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:   12 VPPVAE-------NSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVS 104
            VPP A        + V+I G P ++TED +   FSQYG+I+ V++      +  R + FV+Y  ++  E  +A  S   + G+   VE +++ P  R+ +
Sbjct:  126 VPPPAALQMEQLTDKVFIGGLPQSSTEDMLLEHFSQYGNIIDVVVMRDRASQRSRGFGFVQYDNLDSAEMVMADFSKHHIDGK--WVECKRAVPQDRMAA 223          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LJ02_ECTSI1.610e-5689.22Polyadenylate binding protein n=2 Tax=Ectocarpus T... [more]
A0A7S1TZR2_9STRA7.510e-1241.05Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1TZM3_9STRA7.870e-1241.05Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A3M1M679_9BACT2.930e-738.46RNA-binding protein n=1 Tax=Planctomycetes bacteri... [more]
A0A061D5M8_BABBI3.480e-739.71Polyadenylate-binding protein n=2 Tax=Babesia TaxI... [more]
A0A2V0PIR1_9CHLO2.190e-634.94Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2G4G4B3_9BACT6.080e-632.97RNA-binding protein n=1 Tax=Opitutae bacterium Tax... [more]
A0A2A2RQ55_9BACT6.940e-635.42RRM domain-containing protein n=5 Tax=Verrucomicro... [more]
A0A7C5GD81_9GAMM7.020e-632.22RNA-binding protein n=1 Tax=Chromatiales bacterium... [more]
A0A7S1A933_NOCSC7.180e-630.00Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 19..92
e-value: 5.4E-10
score: 49.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..87
e-value: 8.1E-10
score: 38.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 18..96
score: 12.151
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..101
e-value: 1.5E-14
score: 56.2
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 13..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13721contigS-dermatodea_contig13721:370..1538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13721.2142.1mRNA_S-dermatodea_contig13721.2142.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig13721 370..1538 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig13721.2142.1 ID=prot_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
GEEGGEGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILR
VKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTP
RLVSGGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf