mRNA_S-dermatodea_contig13721.2142.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: D8LJ02_ECTSI (Polyadenylate binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ02_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.610e-56 Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 1
Query: 16 EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVSGGG 321
EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDI SVILRVKHIG+D+RTWAFVEYG EMVEPAIAGS +LELGG PCTVEARKSTPTPR GGG
Sbjct: 220 EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDITSVILRVKHIGDDIRTWAFVEYGAPEMVEPAIAGSESLELGGVPCTVEARKSTPTPRSEYGGG 321
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1TZR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZR2_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 7.510e-12 Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 31 RVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGED-------VRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTP 294
R PV ENS+YI+ F T +D IR F ++G+I S+I RVK ++ RTWAFVEY E + A+ ++ L G TVE R S P
Sbjct: 195 REGPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQP 289
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1TZM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZM3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 7.870e-12 Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 31 RVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGED-------VRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTP 294
R PV ENS+YI+ F T +D IR F ++G+I S+I RVK ++ RTWAFVEY E + A+ ++ L G TVE R S P
Sbjct: 202 REGPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQP 296
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A3M1M679_9BACT (RNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1M679_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 2.930e-7 Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query: 55 SVYIKGFPDTTTEDDIRAEFSQYGDIVSV-ILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV-EARKSTPTPRLVSGGG 321
++Y+ TEDD+R EFSQ+G++ SV I+ + G R +AFVE + + AI ++ E+ G TV EAR T PR GGG
Sbjct: 3 NIYVGNLSFRATEDDLRDEFSQHGEVSSVNIITDRETGRS-RGFAFVEMPNADEAQAAIEATNGKEIAGRGVTVNEARPRTDRPRGGGGGG 92
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A061D5M8_BABBI (Polyadenylate-binding protein n=2 Tax=Babesia TaxID=5864 RepID=A0A061D5M8_BABBI) HSP 1 Score: 57.0 bits (136), Expect = 3.480e-7 Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 55 SVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGG 258
++Y++ FPDT TEDD+R FS+YG+I S++L+ G R +AFV Y M + A+ + ++L G
Sbjct: 197 NLYVRNFPDTWTEDDLRETFSKYGEITSMLLKTDDKG---RRFAFVNYSETSMAKAAMESENGVKLEG 261
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2V0PIR1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PIR1_9CHLO) HSP 1 Score: 54.7 bits (130), Expect = 2.190e-6 Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 37 PPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSV-ILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEAR 282
P +++Y+ P TTE + A FS YG+IVS+ +++ IG+ V+T+AF+++ VE AIA L G P +E +
Sbjct: 19 PSGHHSNLYVSNLPHETTERQLEALFSPYGEIVSLRLVKASRIGQSVKTFAFIKFAAVEEALEAIASLHCSPLCGAPGPLEVK 101
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2G4G4B3_9BACT (RNA-binding protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4G4B3_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 6.080e-6 Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 1
Query: 49 ENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVSGGG 321
EN +++ P TE DIRA FSQ G++ SV + + R +AFV G + + AIA + ++ G P V + P +GGG
Sbjct: 2 ENKLFVGNLPWAATESDIRAHFSQAGEVTSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVAR--PREERPAGGG 90
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2A2RQ55_9BACT (RRM domain-containing protein n=5 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2A2RQ55_9BACT) HSP 1 Score: 51.6 bits (122), Expect = 6.940e-6 Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 1
Query: 49 ENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV------EARKSTPTPRLVSGG 318
EN +++ P TE DIRA FSQ G++VSV + + R +AFV G + + AIA + ++ G P V E R S R SGG
Sbjct: 2 ENKLFVGNLPWAATESDIRAHFSQAGEVVSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVARPREERPSFGGDRPRSGG 97
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7C5GD81_9GAMM (RNA-binding protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5GD81_9GAMM) HSP 1 Score: 50.4 bits (119), Expect = 7.020e-6 Identity = 29/90 (32.22%), Postives = 45/90 (50.00%), Query Frame = 1
Query: 55 SVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV-EARKSTPTPRLVSGGG 321
++Y+ P +TTEDD+R F++YG + SV + + + FVE + AI G + +GG V +AR + PR GGG
Sbjct: 2 NIYVGNLPYSTTEDDLRGMFAEYGVVESVSIIEDRFTGQSKGFGFVEMPNNSEADQAIKGLNEASVGGRRLKVNQARPRSDRPRRAGGGG 91
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1A933_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A933_NOCSC) HSP 1 Score: 52.8 bits (125), Expect = 7.180e-6 Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 34 VPPVAE-------NSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVS 312
VPP A + V+I G P ++TED + FSQYG+I+ V++ + R + FV+Y ++ E +A S + G+ VE +++ P R+ +
Sbjct: 126 VPPPAALQMEQLTDKVFIGGLPQSSTEDMLLEHFSQYGNIIDVVVMRDRASQRSRGFGFVQYDNLDSAEMVMADFSKHHIDGK--WVECKRAVPQDRMAA 223 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13721.2142.1 >prot_S-dermatodea_contig13721.2142.1 ID=prot_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp GEEGGEGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRback to top mRNA from alignment at S-dermatodea_contig13721:370..1538- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13721.2142.1 ID=mRNA_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1169bp|location=Sequence derived from alignment at S-dermatodea_contig13721:370..1538- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13721:370..1538- >mRNA_S-dermatodea_contig13721.2142.1 ID=mRNA_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig13721:370..1538- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |