mRNA_S-dermatodea_contig13721.2142.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13721.2142.1
Unique NamemRNA_S-dermatodea_contig13721.2142.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: D8LJ02_ECTSI (Polyadenylate binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ02_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.610e-56
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 1
Query:   16 EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVSGGG 321
            EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDI SVILRVKHIG+D+RTWAFVEYG  EMVEPAIAGS +LELGG PCTVEARKSTPTPR   GGG
Sbjct:  220 EGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDITSVILRVKHIGDDIRTWAFVEYGAPEMVEPAIAGSESLELGGVPCTVEARKSTPTPRSEYGGG 321          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1TZR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZR2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.510e-12
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   31 RVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGED-------VRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTP 294
            R  PV ENS+YI+ F   T +D IR  F ++G+I S+I RVK   ++        RTWAFVEY   E  + A+  ++   L G   TVE R S P
Sbjct:  195 REGPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQP 289          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1TZM3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZM3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.870e-12
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   31 RVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGED-------VRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTP 294
            R  PV ENS+YI+ F   T +D IR  F ++G+I S+I RVK   ++        RTWAFVEY   E  + A+  ++   L G   TVE R S P
Sbjct:  202 REGPVVENSIYIRDFDKDTEDDAIRDAFKEFGEIKSLIKRVKSYDDEENGGGTVTRTWAFVEYTNSEAADAAVKANANPTLNGVTLTVERRSSQP 296          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A3M1M679_9BACT (RNA-binding protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1M679_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.930e-7
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   55 SVYIKGFPDTTTEDDIRAEFSQYGDIVSV-ILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV-EARKSTPTPRLVSGGG 321
            ++Y+       TEDD+R EFSQ+G++ SV I+  +  G   R +AFVE    +  + AI  ++  E+ G   TV EAR  T  PR   GGG
Sbjct:    3 NIYVGNLSFRATEDDLRDEFSQHGEVSSVNIITDRETGRS-RGFAFVEMPNADEAQAAIEATNGKEIAGRGVTVNEARPRTDRPRGGGGGG 92          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A061D5M8_BABBI (Polyadenylate-binding protein n=2 Tax=Babesia TaxID=5864 RepID=A0A061D5M8_BABBI)

HSP 1 Score: 57.0 bits (136), Expect = 3.480e-7
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   55 SVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGG 258
            ++Y++ FPDT TEDD+R  FS+YG+I S++L+    G   R +AFV Y    M + A+   + ++L G
Sbjct:  197 NLYVRNFPDTWTEDDLRETFSKYGEITSMLLKTDDKG---RRFAFVNYSETSMAKAAMESENGVKLEG 261          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2V0PIR1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PIR1_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 2.190e-6
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   37 PPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSV-ILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEAR 282
            P    +++Y+   P  TTE  + A FS YG+IVS+ +++   IG+ V+T+AF+++  VE    AIA      L G P  +E +
Sbjct:   19 PSGHHSNLYVSNLPHETTERQLEALFSPYGEIVSLRLVKASRIGQSVKTFAFIKFAAVEEALEAIASLHCSPLCGAPGPLEVK 101          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2G4G4B3_9BACT (RNA-binding protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4G4B3_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 6.080e-6
Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 1
Query:   49 ENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVSGGG 321
            EN +++   P   TE DIRA FSQ G++ SV + +       R +AFV  G  +  + AIA +  ++  G P  V   +  P     +GGG
Sbjct:    2 ENKLFVGNLPWAATESDIRAHFSQAGEVTSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVAR--PREERPAGGG 90          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A2A2RQ55_9BACT (RRM domain-containing protein n=5 Tax=Verrucomicrobia TaxID=74201 RepID=A0A2A2RQ55_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 6.940e-6
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 1
Query:   49 ENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV------EARKSTPTPRLVSGG 318
            EN +++   P   TE DIRA FSQ G++VSV + +       R +AFV  G  +  + AIA +  ++  G P  V      E R S    R  SGG
Sbjct:    2 ENKLFVGNLPWAATESDIRAHFSQAGEVVSVEVMMDKFTGRPRGFAFVTMGNAQQAQDAIAKTENIDFMGRPLKVNVARPREERPSFGGDRPRSGG 97          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7C5GD81_9GAMM (RNA-binding protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C5GD81_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 7.020e-6
Identity = 29/90 (32.22%), Postives = 45/90 (50.00%), Query Frame = 1
Query:   55 SVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTV-EARKSTPTPRLVSGGG 321
            ++Y+   P +TTEDD+R  F++YG + SV +         + + FVE       + AI G +   +GG    V +AR  +  PR   GGG
Sbjct:    2 NIYVGNLPYSTTEDDLRGMFAEYGVVESVSIIEDRFTGQSKGFGFVEMPNNSEADQAIKGLNEASVGGRRLKVNQARPRSDRPRRAGGGG 91          
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Match: A0A7S1A933_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A933_NOCSC)

HSP 1 Score: 52.8 bits (125), Expect = 7.180e-6
Identity = 30/100 (30.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   34 VPPVAE-------NSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILRVKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTPRLVS 312
            VPP A        + V+I G P ++TED +   FSQYG+I+ V++      +  R + FV+Y  ++  E  +A  S   + G+   VE +++ P  R+ +
Sbjct:  126 VPPPAALQMEQLTDKVFIGGLPQSSTEDMLLEHFSQYGNIIDVVVMRDRASQRSRGFGFVQYDNLDSAEMVMADFSKHHIDGK--WVECKRAVPQDRMAA 223          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13721.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LJ02_ECTSI1.610e-5689.22Polyadenylate binding protein n=2 Tax=Ectocarpus T... [more]
A0A7S1TZR2_9STRA7.510e-1241.05Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1TZM3_9STRA7.870e-1241.05Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A3M1M679_9BACT2.930e-738.46RNA-binding protein n=1 Tax=Planctomycetes bacteri... [more]
A0A061D5M8_BABBI3.480e-739.71Polyadenylate-binding protein n=2 Tax=Babesia TaxI... [more]
A0A2V0PIR1_9CHLO2.190e-634.94Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2G4G4B3_9BACT6.080e-632.97RNA-binding protein n=1 Tax=Opitutae bacterium Tax... [more]
A0A2A2RQ55_9BACT6.940e-635.42RRM domain-containing protein n=5 Tax=Verrucomicro... [more]
A0A7C5GD81_9GAMM7.020e-632.22RNA-binding protein n=1 Tax=Chromatiales bacterium... [more]
A0A7S1A933_NOCSC7.180e-630.00Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13721contigS-dermatodea_contig13721:370..1538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.8e-45
Seed eggNOG ortholog2880.D8LJ02
KEGG koko:K03102,ko:K14411,ko:K15502
KEGG Pathwayko03015,ko04320,map03015,map04320
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007623,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
EggNOG free text desc.poly(U) RNA binding
EggNOG OGsKOG4205@1,KOG4205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924294.8142643-CDS-S-dermatodea_contig13721:369..5821622924294.8142643-CDS-S-dermatodea_contig13721:369..582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13721 370..582 -
1694079157.889311-CDS-S-dermatodea_contig13721:369..5821694079157.889311-CDS-S-dermatodea_contig13721:369..582Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13721 370..582 -
1622924294.8234224-CDS-S-dermatodea_contig13721:1427..15381622924294.8234224-CDS-S-dermatodea_contig13721:1427..1538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13721 1428..1538 -
1694079157.9014938-CDS-S-dermatodea_contig13721:1427..15381694079157.9014938-CDS-S-dermatodea_contig13721:1427..1538Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13721 1428..1538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13721.2142.1prot_S-dermatodea_contig13721.2142.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13721 370..1538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13721.2142.1

>prot_S-dermatodea_contig13721.2142.1 ID=prot_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
GEEGGEGRGRRVPPVAENSVYIKGFPDTTTEDDIRAEFSQYGDIVSVILR
VKHIGEDVRTWAFVEYGGVEMVEPAIAGSSALELGGEPCTVEARKSTPTP
RLVSGGG*
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mRNA from alignment at S-dermatodea_contig13721:370..1538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13721.2142.1 ID=mRNA_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1169bp|location=Sequence derived from alignment at S-dermatodea_contig13721:370..1538- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAGGAAGGGGGCGAGGGGCGGGGGCGCCGCGTGCCCCCCGTGGCGGA AAACTCGGTGTACATTAAGGGCTTCCCGGACACTACCACCGAGGATGACA TCCGCGCAGAGGTACGCCGTGTATGATACCTGGTACAAGTATGTATATTT TTGTTGTGTCTTGGTTTTAGTGTTTATGTGTGCGTGTTCTTTTTTTTTTC TTTTTCTTTTTTGTCGGTGGGGGATTTTTGTGAGGGTGGGGGTAAGGCGC GGTAAAAAAGGTGAAATTGTGGGGGGCGGGGGAAGGGAGTAGGGAGGGTG TAATGCTGCACTGCCTGAACCTGGTGTGATATCTGAAGATGATGATGATA CTGTCTGTATATATATATACACAGCTGTAGCCGTGTGCTACGGGTGCGCG GCAGGAGGGGAGAATCGTAGGATGGGCAGGGAGGGCGGGGGTATGTATCC TGTGTTCCTGTGCCTGACCTTGAAAATGGCTGAAACTTTTTTTTCCTGCA AGTATAAACATGTGATGTTGGAATTGCATTTTTTTTTTTTTTTTGTCTTG TGGGCGGAGATGGAAGCGGTCTGGGTCTCTGGGGGTCTCCCTACAGTTTT GTAGTCCGCGTACAGGTGCGGAGGAACAATGGACACATCTCCCCGGCTGT TGTCCGGGCGCGTCTCTTGTCTTTGGCCCAGACGTGCGCGTGCGCGCGCT TTGGCCCGCGTCTCGCGTATTTGTTTTCGTGGTTTTTCAAGTTCTAGTAC TAGCACTGCCTCCTCCCGGGGTGGTGCATTACCGCAAGAGGGCTGCTGTT TTTGTCCATGCCCGTCGCTCCCTCCATCTGCCGAACTGACATCCATCCAC CCCCTCGCCCCCCGCGCACCCCCCCCCCTGCACGCCCACTTGTTCGTCTG GTTCGCACCGTTACAATATAATCCCACGCACACGCACAACACACCACGAA ACACAGTTCTCCCAGTACGGCGACATCGTGTCGGTCATCCTCCGCGTGAA GCACATCGGCGAGGATGTCCGCACCTGGGCGTTCGTAGAGTACGGCGGGG TGGAGATGGTGGAGCCCGCAATCGCGGGGAGCTCCGCGCTCGAGCTCGGC GGTGAGCCTTGCACAGTCGAGGCCAGGAAGAGCACGCCCACGCCAAGGTT AGTCTCGGGAGGGGGTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13721:370..1538-

>mRNA_S-dermatodea_contig13721.2142.1 ID=mRNA_S-dermatodea_contig13721.2142.1|Name=mRNA_S-dermatodea_contig13721.2142.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig13721:370..1538- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGAGGAAGGGGGCGAGGGGCGGGGGCGCCGCGTGCCCCCCGTGGCGGA
AAACTCGGTGTACATTAAGGGCTTCCCGGACACTACCACCGAGGATGACA
TCCGCGCAGAGGGCGAGGAAGGGGGCGAGGGGCGGGGGCGCCGCGTGCCC
CCCGTGGCGGAAAACTCGGTGTACATTAAGGGCTTCCCGGACACTACCAC
CGAGGATGACATCCGCGCAGAGTTCTCCCAGTACGGCGACATCGTGTCGG
TCATCCTCCGCGTGAAGCACATCGGCGAGGATGTCCGCACCTGGGCGTTC
GTAGAGTACGGCGGGGTGGAGATGGTGGAGCCCGCAATCGCGGGGAGCTC
CGCGCTCGAGCTCGGCGGTGAGCCTTGCACAGTCGAGGCCAGGAAGAGCA
CGCCCACGCCAAGGTTAGTCTCGGGAGGGGGTTAGTTCTCCCAGTACGGC
GACATCGTGTCGGTCATCCTCCGCGTGAAGCACATCGGCGAGGATGTCCG
CACCTGGGCGTTCGTAGAGTACGGCGGGGTGGAGATGGTGGAGCCCGCAA
TCGCGGGGAGCTCCGCGCTCGAGCTCGGCGGTGAGCCTTGCACAGTCGAG
GCCAGGAAGAGCACGCCCACGCCAAGGTTAGTCTCGGGAGGGGGTTAG
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