prot_S-dermatodea_contig13528.2055.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig13528.2055.1
Unique Nameprot_S-dermatodea_contig13528.2055.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length79
Homology
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.650e-24
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 0
Query:    1 VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLRR 78
            VDFVG+P + P  G  L+GVL AL + G ++H+LVEGGPS A+GFLSE LVDRA+I+RAP+EF RPVPS I  +TLRR
Sbjct:  297 VDFVGMPVQRPGAGVDLSGVLGALLERG-IDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRR 373          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.950e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0
Query:    6 LPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 77
            +P   P  G PL  V+  L Q G + H++VEGGP  A+ FLS++LVDRA+IV+APV+F +PVPSGID + LR
Sbjct:  142 IPTDTPEDGCPLLTVVRFLGQRG-ISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLR 212          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 8.080e-15
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0
Query:    1 VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEF-ARPVPSGIDRNTLRR 78
            +D +  P   P   APL  VL  L+ +G  EH++VEGGP TAK FL    VDRAVI  A +EF   P+PSG+D N L++
Sbjct:  144 IDCINEPELRPEDPAPLLEVLGRLYDMGVREHIMVEGGPRTAKAFLDAACVDRAVIFEAAMEFKGDPIPSGVDENVLKK 222          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S4EBC2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBC2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.990e-15
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0
Query:   12 SGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFA-RPVPSGIDRNTLR 77
            +G A L GVL  L + G V HL+VEGGP TA+ FLS  LVDRA++VRAPV FA +PVPSGI   TLR
Sbjct:  167 AGAAALPGVLRELHRRG-VNHLMVEGGPQTARYFLSAGLVDRAIVVRAPVAFADKPVPSGITAATLR 232          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S2LDW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDW0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.220e-10
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 0
Query:   32 HLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 77
            H++VEGGP+TA+ FL   +VDRA++VRAPVEF  PVP+ +D +T++
Sbjct:  218 HIMVEGGPATARAFLHSGVVDRAILVRAPVEFQEPVPAQMDEDTMK 263          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: B8BTJ7_THAPS (RibD_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTJ7_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 0
Query:   19 GVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 77
            G+++ L + G + H++VEGG +TA+ FL+E  VDRA++VRA VEF  P P+ ID +TL+
Sbjct:  266 GIIDDLAKRG-LNHIMVEGGAATARAFLNERAVDRAILVRASVEFQEPKPAQIDEDTLK 323          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S2SEC0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEC0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.000e-10
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0
Query:   30 VEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTL 76
            V H++VEGGPS A  FLSE LVDR ++V+APV F +PVPSG+    L
Sbjct:  205 VSHMMVEGGPSLAHAFLSEGLVDRVILVQAPVRFHQPVPSGLSPQFL 251          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S4T999_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T999_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.520e-9
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0
Query:   11 PSGGAPLTG--VLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTL 76
            PS  + L+   +LE L     + H++VEGGP TAK FL   +V+RA+++RAP+EF  P  SGID + +
Sbjct:  228 PSSSSALSPNMILENLSIEFDINHVMVEGGPYTAKQFLQSSVVNRAILIRAPIEFVHPEVSGIDADVM 295          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: K0RZ71_THAOC (RibD_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ71_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   30 VEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLRR 78
            + H++VEGGP+TA+ FL   +VDRA++VRAPV+F  PVP+ ++  TL R
Sbjct:  270 LRHIMVEGGPATARAFLEAGVVDRAILVRAPVQFQIPVPAEMNEETLGR 318          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: L1IV36_GUITC (RibD_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IV36_GUITC)

HSP 1 Score: 60.5 bits (145), Expect = 4.100e-9
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 0
Query:   17 LTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFAR-PVPSGIDRNTLR 77
            LT +L  L  +G V+ L++EGGP+T K FL ++LVDRA+++ AP++F + PVPS ID + L+
Sbjct:  147 LTSILGELSNLG-VKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLK 207          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FMH2_ECTSI2.650e-2464.10RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CBN8_9STRA8.950e-1754.17Riboflavin biosynthesis protein n=1 Tax=Tribonema ... [more]
I2CPJ6_NANGC8.080e-1548.10Riboflavin biosynthesis protein n=1 Tax=Nannochlor... [more]
A0A7S4EBC2_9STRA9.990e-1562.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2LDW0_9STRA1.220e-1056.52Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BTJ7_THAPS5.430e-1049.15RibD_C domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S2SEC0_9STRA8.000e-1059.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4T999_9STRA2.520e-944.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0RZ71_THAOC2.590e-953.06RibD_C domain-containing protein n=1 Tax=Thalassio... [more]
L1IV36_GUITC4.100e-948.39RibD_C domain-containing protein n=1 Tax=Guillardi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002734Bacterial bifunctional deaminase-reductase, C-terminalPFAMPF01872RibD_Ccoord: 19..61
e-value: 1.1E-5
score: 25.4
IPR024072Dihydrofolate reductase-like domain superfamilyGENE3D3.40.430.10coord: 2..78
e-value: 2.7E-9
score: 38.6
IPR024072Dihydrofolate reductase-like domain superfamilySUPERFAMILY53597Dihydrofolate reductase-likecoord: 11..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13528contigS-dermatodea_contig13528:5916..6619 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13528.2055.1mRNA_S-dermatodea_contig13528.2055.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig13528 5916..6619 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig13528.2055.1 ID=prot_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEEL
VDRAVIVRAPVEFARPVPSGIDRNTLRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002734RibDG_C
IPR024072DHFR-like_dom_sf