mRNA_S-dermatodea_contig13528.2055.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI) HSP 1 Score: 103 bits (256), Expect = 2.650e-24 Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 1 VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLRR 234
VDFVG+P + P G L+GVL AL + G ++H+LVEGGPS A+GFLSE LVDRA+I+RAP+EF RPVPS I +TLRR
Sbjct: 297 VDFVGMPVQRPGAGVDLSGVLGALLERG-IDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRR 373
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 8.950e-17 Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query: 16 LPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 231
+P P G PL V+ L Q G + H++VEGGP A+ FLS++LVDRA+IV+APV+F +PVPSGID + LR
Sbjct: 142 IPTDTPEDGCPLLTVVRFLGQRG-ISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLR 212
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC) HSP 1 Score: 75.9 bits (185), Expect = 8.080e-15 Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 1 VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEF-ARPVPSGIDRNTLRR 234
+D + P P APL VL L+ +G EH++VEGGP TAK FL VDRAVI A +EF P+PSG+D N L++
Sbjct: 144 IDCINEPELRPEDPAPLLEVLGRLYDMGVREHIMVEGGPRTAKAFLDAACVDRAVIFEAAMEFKGDPIPSGVDENVLKK 222
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S4EBC2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBC2_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 9.990e-15 Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 34 SGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFA-RPVPSGIDRNTLR 231
+G A L GVL L + G V HL+VEGGP TA+ FLS LVDRA++VRAPV FA +PVPSGI TLR
Sbjct: 167 AGAAALPGVLRELHRRG-VNHLMVEGGPQTARYFLSAGLVDRAIVVRAPVAFADKPVPSGITAATLR 232
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S2LDW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDW0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.220e-10 Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1
Query: 94 HLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 231
H++VEGGP+TA+ FL +VDRA++VRAPVEF PVP+ +D +T++
Sbjct: 218 HIMVEGGPATARAFLHSGVVDRAILVRAPVEFQEPVPAQMDEDTMK 263
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: B8BTJ7_THAPS (RibD_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTJ7_THAPS) HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10 Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 55 GVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 231
G+++ L + G + H++VEGG +TA+ FL+E VDRA++VRA VEF P P+ ID +TL+
Sbjct: 266 GIIDDLAKRG-LNHIMVEGGAATARAFLNERAVDRAILVRASVEFQEPKPAQIDEDTLK 323
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S2SEC0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEC0_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.000e-10 Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 88 VEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTL 228
V H++VEGGPS A FLSE LVDR ++V+APV F +PVPSG+ L
Sbjct: 205 VSHMMVEGGPSLAHAFLSEGLVDRVILVQAPVRFHQPVPSGLSPQFL 251
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S4T999_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T999_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.520e-9 Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 31 PSGGAPLTG--VLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTL 228
PS + L+ +LE L + H++VEGGP TAK FL +V+RA+++RAP+EF P SGID + +
Sbjct: 228 PSSSSALSPNMILENLSIEFDINHVMVEGGPYTAKQFLQSSVVNRAILIRAPIEFVHPEVSGIDADVM 295
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: K0RZ71_THAOC (RibD_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ71_THAOC) HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9 Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 88 VEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLRR 234
+ H++VEGGP+TA+ FL +VDRA++VRAPV+F PVP+ ++ TL R
Sbjct: 270 LRHIMVEGGPATARAFLEAGVVDRAILVRAPVQFQIPVPAEMNEETLGR 318
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: L1IV36_GUITC (RibD_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IV36_GUITC) HSP 1 Score: 60.5 bits (145), Expect = 4.100e-9 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query: 49 LTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFAR-PVPSGIDRNTLR 231
LT +L L +G V+ L++EGGP+T K FL ++LVDRA+++ AP++F + PVPS ID + L+
Sbjct: 147 LTSILGELSNLG-VKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLK 207 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13528.2055.1 >prot_S-dermatodea_contig13528.2055.1 ID=prot_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELback to top mRNA from alignment at S-dermatodea_contig13528:5916..6619+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13528.2055.1 ID=mRNA_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at S-dermatodea_contig13528:5916..6619+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13528:5916..6619+ >mRNA_S-dermatodea_contig13528.2055.1 ID=mRNA_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig13528:5916..6619+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |