mRNA_S-dermatodea_contig13528.2055.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13528.2055.1
Unique NamemRNA_S-dermatodea_contig13528.2055.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.650e-24
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLRR 234
            VDFVG+P + P  G  L+GVL AL + G ++H+LVEGGPS A+GFLSE LVDRA+I+RAP+EF RPVPS I  +TLRR
Sbjct:  297 VDFVGMPVQRPGAGVDLSGVLGALLERG-IDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRR 373          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.950e-17
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   16 LPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 231
            +P   P  G PL  V+  L Q G + H++VEGGP  A+ FLS++LVDRA+IV+APV+F +PVPSGID + LR
Sbjct:  142 IPTDTPEDGCPLLTVVRFLGQRG-ISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLR 212          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 8.080e-15
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    1 VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEF-ARPVPSGIDRNTLRR 234
            +D +  P   P   APL  VL  L+ +G  EH++VEGGP TAK FL    VDRAVI  A +EF   P+PSG+D N L++
Sbjct:  144 IDCINEPELRPEDPAPLLEVLGRLYDMGVREHIMVEGGPRTAKAFLDAACVDRAVIFEAAMEFKGDPIPSGVDENVLKK 222          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S4EBC2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBC2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 9.990e-15
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   34 SGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFA-RPVPSGIDRNTLR 231
            +G A L GVL  L + G V HL+VEGGP TA+ FLS  LVDRA++VRAPV FA +PVPSGI   TLR
Sbjct:  167 AGAAALPGVLRELHRRG-VNHLMVEGGPQTARYFLSAGLVDRAIVVRAPVAFADKPVPSGITAATLR 232          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S2LDW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDW0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.220e-10
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1
Query:   94 HLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 231
            H++VEGGP+TA+ FL   +VDRA++VRAPVEF  PVP+ +D +T++
Sbjct:  218 HIMVEGGPATARAFLHSGVVDRAILVRAPVEFQEPVPAQMDEDTMK 263          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: B8BTJ7_THAPS (RibD_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTJ7_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 5.430e-10
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   55 GVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLR 231
            G+++ L + G + H++VEGG +TA+ FL+E  VDRA++VRA VEF  P P+ ID +TL+
Sbjct:  266 GIIDDLAKRG-LNHIMVEGGAATARAFLNERAVDRAILVRASVEFQEPKPAQIDEDTLK 323          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S2SEC0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEC0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.000e-10
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   88 VEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTL 228
            V H++VEGGPS A  FLSE LVDR ++V+APV F +PVPSG+    L
Sbjct:  205 VSHMMVEGGPSLAHAFLSEGLVDRVILVQAPVRFHQPVPSGLSPQFL 251          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: A0A7S4T999_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T999_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.520e-9
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   31 PSGGAPLTG--VLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTL 228
            PS  + L+   +LE L     + H++VEGGP TAK FL   +V+RA+++RAP+EF  P  SGID + +
Sbjct:  228 PSSSSALSPNMILENLSIEFDINHVMVEGGPYTAKQFLQSSVVNRAILIRAPIEFVHPEVSGIDADVM 295          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: K0RZ71_THAOC (RibD_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ71_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 2.590e-9
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   88 VEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFARPVPSGIDRNTLRR 234
            + H++VEGGP+TA+ FL   +VDRA++VRAPV+F  PVP+ ++  TL R
Sbjct:  270 LRHIMVEGGPATARAFLEAGVVDRAILVRAPVQFQIPVPAEMNEETLGR 318          
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Match: L1IV36_GUITC (RibD_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IV36_GUITC)

HSP 1 Score: 60.5 bits (145), Expect = 4.100e-9
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   49 LTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEELVDRAVIVRAPVEFAR-PVPSGIDRNTLR 231
            LT +L  L  +G V+ L++EGGP+T K FL ++LVDRA+++ AP++F + PVPS ID + L+
Sbjct:  147 LTSILGELSNLG-VKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLK 207          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13528.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FMH2_ECTSI2.650e-2464.10RibD_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CBN8_9STRA8.950e-1754.17Riboflavin biosynthesis protein n=1 Tax=Tribonema ... [more]
I2CPJ6_NANGC8.080e-1548.10Riboflavin biosynthesis protein n=1 Tax=Nannochlor... [more]
A0A7S4EBC2_9STRA9.990e-1562.69Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2LDW0_9STRA1.220e-1056.52Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BTJ7_THAPS5.430e-1049.15RibD_C domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S2SEC0_9STRA8.000e-1059.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4T999_9STRA2.520e-944.12Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0RZ71_THAOC2.590e-953.06RibD_C domain-containing protein n=1 Tax=Thalassio... [more]
L1IV36_GUITC4.100e-948.39RibD_C domain-containing protein n=1 Tax=Guillardi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13528contigS-dermatodea_contig13528:5916..6619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog2880.D7FMH2
EggNOG free text desc.RibD C-terminal domain
EggNOG OGs2CYVK@1,2S6R1@2759
Ec32 ortholog descriptionBacterial bifunctional deaminase-reductase, C-terminal
Ec32 orthologEc-23_000290.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.7009335-CDS-S-dermatodea_contig13528:5915..60001622924288.7009335-CDS-S-dermatodea_contig13528:5915..6000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13528 5916..6000 +
1694079153.3800385-CDS-S-dermatodea_contig13528:5915..60001694079153.3800385-CDS-S-dermatodea_contig13528:5915..6000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13528 5916..6000 +
1622924288.7142339-CDS-S-dermatodea_contig13528:6467..66191622924288.7142339-CDS-S-dermatodea_contig13528:6467..6619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13528 6468..6619 +
1694079153.3990612-CDS-S-dermatodea_contig13528:6467..66191694079153.3990612-CDS-S-dermatodea_contig13528:6467..6619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13528 6468..6619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13528.2055.1prot_S-dermatodea_contig13528.2055.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13528 5916..6619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13528.2055.1

>prot_S-dermatodea_contig13528.2055.1 ID=prot_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
VDFVGLPPRLPSGGAPLTGVLEALFQVGRVEHLLVEGGPSTAKGFLSEEL
VDRAVIVRAPVEFARPVPSGIDRNTLRR*
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mRNA from alignment at S-dermatodea_contig13528:5916..6619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13528.2055.1 ID=mRNA_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at S-dermatodea_contig13528:5916..6619+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGACTTTGTCGGTTTACCGCCGCGGTTGCCATCGGGGGGAGCCCCGCT TACTGGAGTTTTGGAGGCATTGTTTCAGGTAGGCCGTTGTAGGTGTATCG GTTCCTTTTCGTGTTCTTTTTGTTTTCGGGGTTGTGTTCTCGTCTTTCTC CGAAATCTTAAGGCGTGCAGCGAACGCCGCGCCCCGGGTTGTTGCTTTGG GAGGTGACTTCTGATGTATGGTCGCTTGAAAACTTGTCCGAGTTAACTGG CCGTGCGCGTGGTGCGTGCTCGGTTTAGATGCGCGGCAACCCGGTCTTTT GGCGCGTGTGCGATTCTCCTGCCAGAAACAAAGCCCCCCAAAACGACAGC CACCGCTATCGTTCTGTGGCTACCTCTTCTGCCCCGGTTCTGTGTTTCCG CGCCCCCTGAGACCCATTTCTATCGGCCAAAGCTCACGTTTTTGGCTCGT AGCTCCCCCGGCAAATACACGGATGTCATCAACGCTCTAACGATACTGCT GTACCTCGTGCGATACGCGTCTCGGTTTTTCGTTTGTGCTTGCGGCAGAG AGGCGTGGAGCACCTCCTGGTGGAAGGCGGCCCAAGCACCGCGAAGGGTT TTCTATCGGAGGAGCTCGTCGATAGGGCTGTTATCGTCCGGGCCCCCGTG GAGTTTGCTCGCCCGGTGCCCTCTGGCATCGACCGCAACACGCTGAGAAG GTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13528:5916..6619+

>mRNA_S-dermatodea_contig13528.2055.1 ID=mRNA_S-dermatodea_contig13528.2055.1|Name=mRNA_S-dermatodea_contig13528.2055.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig13528:5916..6619+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGACTTTGTCGGTTTACCGCCGCGGTTGCCATCGGGGGGAGCCCCGCT
TACTGGAGTTTTGGAGGCATTGTTTCAGGTAGGCCGTCGACTTTGTCGGT
TTACCGCCGCGGTTGCCATCGGGGGGAGCCCCGCTTACTGGAGTTTTGGA
GGCATTGTTTCAGGTAGGCCGCGTGGAGCACCTCCTGGTGGAAGGCGGCC
CAAGCACCGCGAAGGGTTTTCTATCGGAGGAGCTCGTCGATAGGGCTGTT
ATCGTCCGGGCCCCCGTGGAGTTTGCTCGCCCGGTGCCCTCTGGCATCGA
CCGCAACACGCTGAGAAGGTAAGCGTGGAGCACCTCCTGGTGGAAGGCGG
CCCAAGCACCGCGAAGGGTTTTCTATCGGAGGAGCTCGTCGATAGGGCTG
TTATCGTCCGGGCCCCCGTGGAGTTTGCTCGCCCGGTGCCCTCTGGCATC
GACCGCAACACGCTGAGAAGGTAA
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