mRNA_S-dermatodea_contig13276.1944.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13276.1944.1
Unique NamemRNA_S-dermatodea_contig13276.1944.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 471 bits (1212), Expect = 2.330e-149
Identity = 228/258 (88.37%), Postives = 244/258 (94.57%), Query Frame = 1
Query:    1 GKYTARLSEGRESSGRAEESTLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKADGVGGKVRLHSLEHAGMFISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSLAAAPC 774
            G+Y  +LSEGRESSG+ ++STLLNLLFVPDGSPMK LAKALLRLDGLSHVLAWTRDPVLACKD A+L FVELPR+RLRFEAKADG GGKVRLHSLEHAGMFISG +GAEM++LVEGLPSSL+LENSE+DRFLLLPSATLPGRPES GT FSGE+VLNRCD WWLRCVG GARHHLYPVHVS CLLSTPSL+AALYLLVSRFVAGQY+Q FSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAV+CRLKLSLAAAPC
Sbjct: 2027 GRYAVKLSEGRESSGKVDQSTLLNLLFVPDGSPMKVLAKALLRLDGLSHVLAWTRDPVLACKDPASLDFVELPRLRLRFEAKADGPGGKVRLHSLEHAGMFISGADGAEMTKLVEGLPSSLLLENSEKDRFLLLPSATLPGRPESKGTPFSGEVVLNRCDSWWLRCVGDGARHHLYPVHVSGCLLSTPSLSAALYLLVSRFVAGQYEQAFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVSCRLKLSLAAAPC 2284          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.130e-52
Identity = 112/244 (45.90%), Postives = 145/244 (59.43%), Query Frame = 1
Query:   40 SGRAEESTLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRF--EAKADGVGGKV--RLHSLEHAGMFISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSL 759
            +G  E  TLLNLL  P  SP+K L+  LLR+D LSH+L WT   V    D   +  VELPRVRL F  + +    GG V  +L S EH G+F+S      +  LV GLP +++LEN + + F+L+ +   P RP      F+ E+VLNR  P W   +G   RH+LY VH+S   L TP+L++ALYL + RF+A +YD  F + + CVTD PL  EE   L  LG L  D HPDA ACRLKLSL
Sbjct: 1904 AGTEECHTLLNLLHAPASSPLKDLSSILLRVDNLSHILVWTFADVQTPSDVCRIDLVELPRVRLSFRLQEEVSQPGGPVDLKLFSQEHTGLFMSANRDPRIVDLVRGLPHAVLLENWKGELFILVAATAYPTRPVVPNMIFATELVLNRTSPEWNANLGD-VRHYLYSVHLSKMFLFTPTLSSALYLFLLRFMARRYDLAFRLADSCVTDTPLTAEEDQILDLLGSLNFDMHPDAHACRLKLSL 2146          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 192 bits (487), Expect = 5.240e-52
Identity = 109/242 (45.04%), Postives = 135/242 (55.79%), Query Frame = 1
Query:   61 TLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKADGVGGKVR----LHSLEHAGMFISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSLAAAPC 774
            TLLNLL+   GSP+  LA  L RL+  SH+L WTR  + + ++  ++  VELPR+RL F           +    L+S EH GM +S      +  LV  LP+S+ILEN +                          +V NR D  WL  +G   RH+LYPVH S  +LSTPSLAAALYLL+ RF+A QY  VFSMVE CVTDL L  EEA    WLG L  DH PDAVACRL++S    PC
Sbjct: 2826 TLLNLLYAAPGSPLHELAHVLTRLESPSHILVWTRQAINSPQEGGSIDLVELPRLRLTFSTLHTTGASSAKPVSLLYSHEHNGMHLSARRSGGLEHLVSCLPNSVILENDD--------------------------VVFNRGDARWLTALGNDVRHYLYPVHPSETMLSTPSLAAALYLLLMRFMARQYADVFSMVESCVTDLKLSPEEAQIFAWLGSLRGDHQPDAVACRLRISKLIGPC 3041          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A7S1U856_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U856_9STRA)

HSP 1 Score: 178 bits (452), Expect = 9.310e-48
Identity = 101/244 (41.39%), Postives = 146/244 (59.84%), Query Frame = 1
Query:   46 RAEESTLLNLLFVPDGSP-MKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKADGVGGKVRLHSLEHAGMFISG--PEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSLAAA 768
            R    TL+N+L+ P  S  +  L   LLRL+ LSH+L W+         A ++  +E+PR+RL F A+A    G  R    EH+ +FI    P+ A + RL+EGLP SL+LEN + D FLLLP+ TLP R       FS +++L+R +  WL  + G +RH+++P+H +   L+TP+LA+ALYL++ RF+A  Y  VF + + CV+D  L  EE      L    +D HPDA ACRLK+SLA +
Sbjct:   43 RRPTRTLINMLWAPQSSEILANLLHVLLRLENLSHILVWSEIEADDPGAATSVDLIEMPRLRLSFRAEATD--GPKRFMCREHSDLFICNKPPKCARLRRLLEGLPHSLVLENKDGDLFLLLPATTLPMRTVVQDAPFSTDLLLDRNNQAWLENMSG-SRHYVFPIHSTRLFLTTPTLASALYLMLCRFLARDYQAVFRLADSCVSDQQLNAEEEQIFEQLEFCNYDSHPDAHACRLKISLATS 283          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A7S3L4X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4X5_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.590e-45
Identity = 103/238 (43.28%), Postives = 147/238 (61.76%), Query Frame = 1
Query:   61 TLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKAD-GVGGKV--RLHSLEHAGMFIS-GPEGAEMS-RLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSL 759
            TLLN+L  P  S +K +   L RLD L+HVL W+   V +  D A +  +ELPRV LRF+AK +  V G V  RL+S ++ G++I+   E  E+S RL+  +   ++L+N ++D F+LLPS  LP R   +G+  S +++L+R +  W+  +G   R +LYP+H S   L TPSLA++LYLL+  F+ G Y  VF MVE CV++  L  EE      L  L +D HPDA ACRLKLS+
Sbjct:  284 TLLNVLTAPPSSLLKRVGMLLSRLDNLAHVLIWSESEVASAHDPATIDLIELPRVNLRFKAKENKSVDGHVETRLYSNDYDGLYIATSTEAREISERLLGTVSHFIVLQNEDKDLFVLLPSCALPRRLHMDGSHLSVQVILDRRNQEWINNIGE-VRSYLYPIHNSRSFLVTPSLASSLYLLLMYFITGAYPDVFKMVESCVSE-QLTPEEQQIFNQLEFLGNDCHPDAHACRLKLSV 519          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A2E0ZET9_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZET9_9CHLR)

HSP 1 Score: 168 bits (426), Expect = 7.580e-44
Identity = 106/261 (40.61%), Postives = 154/261 (59.00%), Query Frame = 1
Query:   10 TARLSEGRESSG---RAEESTLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTR-DPVLACKDAAA-----LYFVELPRVRLRFEAKADGVGGKVRLHSLEHAGMFISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGH--LEHDHHPDAVACRLKLSL 759
            TA   EG  +S     ++E  +L+LL  P+ S + +LA  + R++ LSHVLAW R D     +   A     LY V LPR++L F+A+   VGG V+L+S++HA +F++     E + L+ G+P SL+L NS  +  +L+PS     RP      FS E+VL+R D  W+  +     +++YPVHVS C  ++P+LA+ALYLL+ RF+  QY  V ++V+   +D  L KEEA SL  L       D HPDA ACRLK+SL
Sbjct:  382 TADSGEGGAASASDIESDEMVMLDLLHAPEDSYLASLATLMARIENLSHVLAWARFDAATDLRSPTAVTHSDLYIVSLPRLKLTFQARK--VGGVVKLYSVDHADLFVTNERSEETTALLAGIPHSLLLSNSNGEVSVLVPSVPTI-RPMIRTIPFSTELVLDRSDSKWMAALENP--YYVYPVHVSLCFCASPTLASALYLLLLRFLNRQYHAVCTLVDTVSSDTDLTKEEANSLALLNSPKCSADCHPDAHACRLKISL 637          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A7S0MEC0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MEC0_9CRYP)

HSP 1 Score: 163 bits (412), Expect = 8.980e-44
Identity = 90/240 (37.50%), Postives = 145/240 (60.42%), Query Frame = 1
Query:   49 AEESTLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKADGVGGKVRLHSLEHAGMFISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSLAAA 768
            ++  TLLNLL  P  S +  +A    +++ L +VLAW++      ++  A+  +ELPR++L F+A  +   G++R +  EHAG+FIS     +   L+ GLP +L+L N  ++RF+L+ SA  P +P +   +F   ++L+R D  W+  +   A+++LYP+HVS   L  P+L++ LYLLV RF +  Y+++F M   CV+D  L KEE      L ++  D HPDA+ACRLK+S+  A
Sbjct:  205 SQRLTLLNLLHAPGSSHLSKVAALFTKIESLGYVLAWSKSG----EEDMAVDLIELPRLKLSFKAIFED--GELRFYCREHAGLFISTESCPDSEILMRGLPCALLLTNHVKERFILVNSAVKPIKP-AQSVSFPSALLLDRQDRDWISNLS--AKYYLYPLHVSKRFLQIPTLSSMLYLLVLRFYSRNYEEIFKMANSCVSDTELSKEEMQIWDLLKYVVDDRHPDAIACRLKISIVTA 435          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A7S3QCT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCT0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.370e-43
Identity = 94/237 (39.66%), Postives = 146/237 (61.60%), Query Frame = 1
Query:   61 TLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKA-DGVGGKV--RLHSLEHAGMFISGPEGAE--MSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLS 756
            TLLN+   P  S +K +   L RLD L+H+L W++  V+  +D + +  +E+PRV L F +K+ + + GK   RL+S +H G++++    A   + +L+  +   ++L+NS+ D F+L+P   LP R  ++GTA S +++L+R +  W+  +G   R +LYPVH S   L TPSLA+++YL+V  F+ G Y  VF MVE CV++  L  EE      L  L +D+HPDA ACRLKLS
Sbjct: 1557 TLLNISSAPPSSLLKRVGMLLSRLDNLAHILVWSKSKVVRAEDGSNIDLIEMPRVNLSFVSKSIETIDGKTEHRLYSNDHNGLYVATSTEAREVVEKLLGSISHFIVLQNSDNDLFVLMPGCALPRRLNTDGTALSVQVILDRRNKEWIDNMGE-VRCYLYPVHNSQAFLFTPSLASSMYLMVMYFITGSYRDVFKMVESCVSET-LSAEEHQIFSQLEFLGNDYHPDAHACRLKLS 1791          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A7S1NNJ3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNJ3_9EUGL)

HSP 1 Score: 166 bits (421), Expect = 3.230e-43
Identity = 102/239 (42.68%), Postives = 144/239 (60.25%), Query Frame = 1
Query:   79 FVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAKA--DGVGGK--VRLHSLEHAGMFISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPE-------SNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLSLA 762
              PDGS +K LA  LLRLD LSH L WT++   A    +A+  +ELPR+RL F A+   D   GK  VRL+SLEH G +I+    A  + L++G+ + ++LE++  + + L+ + TLP R E       S  T    ++VL+R +  W+  +G   RH++YP+H     L TP+LA+ALYLL+ RF++ QY  VF MV+ CVTD+ +  +E      L  L  D HPDA ACRLKLSLA
Sbjct:    1 MAPDGSYLKGLASLLLRLDNLSHCLVWTKNDENA---VSAIDIIELPRLRLTFHARTVLDEETGKQVVRLYSLEHEGRWITNRHDAMATTLLKGIQNVVLLEDAHGEVYALVSALTLPRRLEVRSSSVRSAYTLLPTDVVLDRSNLEWIEKLGD-QRHYIYPIHACKAFLFTPTLASALYLLLLRFISRQYAAVFCMVDSCVTDMSMNDDEYQIWDQLQFLNGDTHPDAHACRLKLSLA 235          
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Match: A0A7S2UI47_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UI47_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.560e-43
Identity = 97/237 (40.93%), Postives = 147/237 (62.03%), Query Frame = 1
Query:   61 TLLNLLFVPDGSPMKTLAKALLRLDGLSHVLAWTRDPVLACKDAAALYFVELPRVRLRFEAK-ADGVGGKV--RLHSLEHAGMFIS-GPEGAEMS-RLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAFSGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSRFVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLKLS 756
            TLLN+L  P  S +K +   L RLD LSHVL W+   V +  DA ++  +ELPRV+L F++K  + + G+V  R++S +H G++IS   E  E++ +L+  +   ++L+N++ D F+L+P   LP R   +G+  S +++L+R +  W+  +G   R +LYPVH S   L TPSLA+++YL+V  F+ G Y  VF MV+ CV++  L  EE      L  L +D HPDA ACRLKLS
Sbjct: 1086 TLLNILSAPPSSLVKRIGMLLSRLDNLSHVLMWSSQKVQSAHDACSIDVIELPRVKLTFKSKRVESIDGRVEQRIYSNDHDGLYISTSTESREIAEKLLGSIAHFIVLQNADNDLFVLIPGCALPRRLHIDGSHLSVQIILDRRNQEWIDNIGE-VRCYLYPVHNSKSFLVTPSLASSMYLMVLYFITGSYRDVFKMVDSCVSE-ELTPEELQVFNQLEFLGNDFHPDAHACRLKLS 1320          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13276.1944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI2.330e-14988.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2R5FYY4_9STRA1.130e-5245.90Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A835Z7Z7_9STRA5.240e-5245.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U856_9STRA9.310e-4841.39Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3L4X5_9STRA4.590e-4543.28Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A2E0ZET9_9CHLR7.580e-4440.61Uncharacterized protein (Fragment) n=1 Tax=Anaerol... [more]
A0A7S0MEC0_9CRYP8.980e-4437.50Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3QCT0_9STRA1.370e-4339.66Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S1NNJ3_9EUGL3.230e-4342.68Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S2UI47_9STRA3.560e-4340.93Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13276contigS-dermatodea_contig13276:2449..5791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score471.1
Seed ortholog evalue3.4e-130
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons6
Model size774
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13276.1944.1prot_S-dermatodea_contig13276.1944.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13276 2449..5791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.7143974-CDS-S-dermatodea_contig13276:2448..25981622924280.7143974-CDS-S-dermatodea_contig13276:2448..2598Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 2449..2598 -
1694079147.6308112-CDS-S-dermatodea_contig13276:2448..25981694079147.6308112-CDS-S-dermatodea_contig13276:2448..2598Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 2449..2598 -
1622924280.723299-CDS-S-dermatodea_contig13276:3198..33841622924280.723299-CDS-S-dermatodea_contig13276:3198..3384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 3199..3384 -
1694079147.6496446-CDS-S-dermatodea_contig13276:3198..33841694079147.6496446-CDS-S-dermatodea_contig13276:3198..3384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 3199..3384 -
1622924280.7316122-CDS-S-dermatodea_contig13276:3625..37181622924280.7316122-CDS-S-dermatodea_contig13276:3625..3718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 3626..3718 -
1694079147.6587894-CDS-S-dermatodea_contig13276:3625..37181694079147.6587894-CDS-S-dermatodea_contig13276:3625..3718Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 3626..3718 -
1622924280.7423675-CDS-S-dermatodea_contig13276:4251..43291622924280.7423675-CDS-S-dermatodea_contig13276:4251..4329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 4252..4329 -
1694079147.6682067-CDS-S-dermatodea_contig13276:4251..43291694079147.6682067-CDS-S-dermatodea_contig13276:4251..4329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 4252..4329 -
1622924280.7511816-CDS-S-dermatodea_contig13276:4721..48931622924280.7511816-CDS-S-dermatodea_contig13276:4721..4893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 4722..4893 -
1694079147.6782665-CDS-S-dermatodea_contig13276:4721..48931694079147.6782665-CDS-S-dermatodea_contig13276:4721..4893Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 4722..4893 -
1622924280.762917-CDS-S-dermatodea_contig13276:5696..57911622924280.762917-CDS-S-dermatodea_contig13276:5696..5791Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 5697..5791 -
1694079147.6877184-CDS-S-dermatodea_contig13276:5696..57911694079147.6877184-CDS-S-dermatodea_contig13276:5696..5791Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13276 5697..5791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13276.1944.1

>prot_S-dermatodea_contig13276.1944.1 ID=prot_S-dermatodea_contig13276.1944.1|Name=mRNA_S-dermatodea_contig13276.1944.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=258bp
GKYTARLSEGRESSGRAEESTLLNLLFVPDGSPMKTLAKALLRLDGLSHV
LAWTRDPVLACKDAAALYFVELPRVRLRFEAKADGVGGKVRLHSLEHAGM
FISGPEGAEMSRLVEGLPSSLILENSERDRFLLLPSATLPGRPESNGTAF
SGEMVLNRCDPWWLRCVGGGARHHLYPVHVSCCLLSTPSLAAALYLLVSR
FVAGQYDQVFSMVEGCVTDLPLGKEEAGSLRWLGHLEHDHHPDAVACRLK
LSLAAAPC
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mRNA from alignment at S-dermatodea_contig13276:2449..5791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13276.1944.1 ID=mRNA_S-dermatodea_contig13276.1944.1|Name=mRNA_S-dermatodea_contig13276.1944.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3343bp|location=Sequence derived from alignment at S-dermatodea_contig13276:2449..5791- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAAGTACACGGCGAGGCTGTCGGAGGGGAGAGAGTCTTCGGGGAGGGC GGAGGAGTCCACGCTGCTGAATTTGCTGTTTGTGCCGGACGGGAGGTAAG GTTGATGTGTGTTTTGAGCACACGGCTCGGTGTCGTTGGACGCTGTGTAT GTATGTATGTATATACGTGTTGTGGCAGTTACGGAGGTACTCAGGAGTAA TCAGGAGCCAATTTCTGCTCGATGGCGTATTCAAGTCTTTTTTTTTTAAC GTTGGCCCCGAACACTCTGTAGCTTATTTTTGTAAGATTGCACATGTTGT GACGAGCTAGACCAGGTTAATGTCTGGTTTGTTACGTTGGGTGTACTTTT TGGCGCATTTGCTCCTGGTAACTGTGTACCTCCGCAATAGGGGTATTGGT CGGAGGGCCTCGCGGCGTGCATGCTATCCTCCCTGCTGTGAGGCCTGGCT TTTATTATGGGGAAATGTGGCCCAGCGGCTGACGGAGAGTGTGACCGCAT CGTATTCATATAAAAGAACTTCTCTGATACGTGCTGTTGTCGTAGCCGCT TCGGAGGTTCTCAGTTGGTCGCATGAAGCACGATCTACGTCACGTTATGT TCAAAATGAGCGTACTAGCGGTCGTTCGCGCTTGACCAATCTTAAGACGG CATTTCGAACTTCCAAAACGCGTTTCCACTGGGCATCAATCATCCTCAGC TTCTAACGGAGCGGGTAACACACCGCAGCTATTTCGCGTCGTAGGGGTGA ATCCTGCCCTCGGTACATGGCACACTCGGACTGAACCCATCCCGAACGAA GTACCGCCCTCCATCTCTCAATTCACCAGCTCCCCGACCGACAAACTCCC AACCACAGCCCTTACGTCTAACTCCCACAACCTGTGCCGATCCAACAGTC CCATGAAGACGTTAGCCAAGGCTCTTCTTCGCCTCGACGGCCTCAGCCAC GTTCTGGCATGGACTCGCGACCCTGTGCTCGCGTGCAAGGATGCCGCCGC CCTGTACTTCGTGGAACTCCCTCGCGTCCGGCTGCGGTTCGAGGCTAAGG CTGACGGAGTGGGAGGGAAGGTAGGCCCTTCATAACTCTCATGTTTTCCA ATATAGAACATGAAATATGGCGTGCTTGGTTTTGAAATGAAACGCTAATG CACAAGTCCCACTGGGGTTTGGTTGCGATCTGTGGAAGCGAGAGATTTTC TCGTGGGCTGTGTTTTGCGCCGTGCGATGCAACAGGCTGTGTTGGGAGTC ACGGCGTGTATATAAGGACAGCACTGTCGTTTTTTCTTGGCGTAGGCGGT GCAGAATTCTCGGCACATGCTCTCTGTTACTCCTTTTGACACGTGCTGCT AGAAGTATAATGTACATTGTATTCACGTACGAGGCACGAACCGTGTGTGA TATTCACGGTGTGCTCGTCCGTTGTACTTGGTGCTGCGTCCATATTTTGA CGTGGCGTGCAGGTGCGACTTCACAGCCTCGAGCACGCGGGCATGTTCAT CAGCGGACCTGAGGGGGCGGAGATGTCGCGTCTCGTCGAGGTATTAGCTC AACCGGCGTCACCCTCCGGACGCTGTTTATCCTGTTTCACTTTTTTTTTC ATACTTCCACGATGCAGAGCAGCAAGTGCGGAGTATTTGCCTGATATGAT GCAGCCATTTTTTTCTCCAAGTCGTTCTCTGTTCGTTTTGACTTCCGATA TTTATTAGTTTTGTTGCCATCATAATTCCCTGTAGCAGCGTGTTTGAAGG GCGTCGAGGTTCCCACCCCGCGGTGGACATGTGCTGGATTGCCCGTGTTT GTAGGAAAATACCAGCTTTCGAACTGGTACTTGCAATTTTTTTACAGCAG AGGAGTACGATACACCGGTATAGCTTTAGCCAGGGCCGCCTCCGCTTCCC CGCTTGAGCTGCTGCCACAGCATGTCGGCATTGTGAAGCAGTACCTATTT CATGTTTGTATTTCGCGTTTGAAGCCAGTCCTGAGTCATCCACCTCGTTT TGTTTTTGTCTCTTTGATATCAGCACTGACAACTGTGTCGCTCGTCGCCG TGCTCATGACCGATTCCGAGCAGGGTCTGCCGTCGTCGCTGATTTTGGAA AACTCCGAGAGGGACCGCTTCTTGCTTCTTCCCTCTGCCACACTTCCGGG AAGACCAGAGTCCAACGTAAGGGTTAGCGAGGGACGCACTCGCTTCGAAA AGAAAGCCCCCGATTCATAAAATCGTCTTGTTTTGTTTCGCCACCGCATT TGATATTGGCTCGCTGAAGGTCAACGCACAAGAGGGCGCTGGGTCGTTCT TGAATAGACGCGCATATCCCACGCGTGGTGGCCTCTGACATGGCTCGATC CCGCTTCTCTTCCCGATGCTCGGCCCGCTCGACGCGGTCGTTTTTCCCCG CATGCAGGGCACGGCGTTCTCCGGAGAGATGGTTCTCAACCGCTGCGACC CGTGGTGGCTGCGCTGCGTAGGGGGCGGTGCGCGGCACCACCTGTACCCA GTGCACGTTAGTTGCTGCCTTCTCTCCACACCTTCCCTCGCCGCGGCGTT GTACCTGCTCGTGTCGAGATTTGTCGCGGGGCAATACGACCAGGTTTGTG TGTGTGTGTTGATGTGTTTGTATGCACTAGTTGCAAGCCACGGCTGTTGC CCGTGAGGTGTGCGTTGGCATGTTGGCAGGACGATGTGCGGGTTAAGTTC GGGATACGGTGTGGCGACCCACGGCAGGCGTATCGCTATGCATTTGAAAA TGTAAATCGTACCGGATTTAGTATACCCAATCCGGCTTCAGTTTGAAAAT GTAAATCGTATAGGATGTTGCTAAAAAAATGGTTCACTCTTGTATTAATT AATAAGGATGTTGCGCGGGGCATTTCTTTCTCCAACGGATGACAGGTCCT GTCCAAGTTTATCTAACGCCGGGCGAGGCGCACTCACGGGGAAACGCGGG GGCGTAGAGTTGTCACGCCGCAGAAACGGGTGTTGTTGGACGCCTATTTA GCTCATCGAAGCGAACCGTTATGATACTGAGCATCGAGCATGGCGACACG TTCTGGCGGAGTTTTTTTCTCTTCTTGCGTCCATCAGGCGTGCATCTCCG TTCCATATTCAGGCTGTTAGCTCCATTCATGCGCGGGGTTTAAACAGAAA GTCTGCGGACGCTCCGATACCAACGCCACATACCGTGGTGCAGGTGTTCT CTATGGTGGAGGGATGCGTGACAGACCTTCCGCTAGGCAAGGAGGAGGCA GGAAGCCTTCGGTGGCTTGGGCACCTGGAGCACGACCACCACCCGGACGC CGTTGCGTGCCGGTTGAAGCTCAGCCTCGCCGCCGCGCCGTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13276:2449..5791-

>mRNA_S-dermatodea_contig13276.1944.1 ID=mRNA_S-dermatodea_contig13276.1944.1|Name=mRNA_S-dermatodea_contig13276.1944.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at S-dermatodea_contig13276:2449..5791- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAAGTACACGGCGAGGCTGTCGGAGGGGAGAGAGTCTTCGGGGAGGGC
GGAGGAGTCCACGCTGCTGAATTTGCTGTTTGTGCCGGACGGGAGGGGAA
GTACACGGCGAGGCTGTCGGAGGGGAGAGAGTCTTCGGGGAGGGCGGAGG
AGTCCACGCTGCTGAATTTGCTGTTTGTGCCGGACGGGAGTCCCATGAAG
ACGTTAGCCAAGGCTCTTCTTCGCCTCGACGGCCTCAGCCACGTTCTGGC
ATGGACTCGCGACCCTGTGCTCGCGTGCAAGGATGCCGCCGCCCTGTACT
TCGTGGAACTCCCTCGCGTCCGGCTGCGGTTCGAGGCTAAGGCTGACGGA
GTGGGAGGGAAGTCCCATGAAGACGTTAGCCAAGGCTCTTCTTCGCCTCG
ACGGCCTCAGCCACGTTCTGGCATGGACTCGCGACCCTGTGCTCGCGTGC
AAGGATGCCGCCGCCCTGTACTTCGTGGAACTCCCTCGCGTCCGGCTGCG
GTTCGAGGCTAAGGCTGACGGAGTGGGAGGGAAGGTGCGACTTCACAGCC
TCGAGCACGCGGGCATGTTCATCAGCGGACCTGAGGGGGCGGAGATGTCG
CGTCTCGTCGAGGTGCGACTTCACAGCCTCGAGCACGCGGGCATGTTCAT
CAGCGGACCTGAGGGGGCGGAGATGTCGCGTCTCGTCGAGGGTCTGCCGT
CGTCGCTGATTTTGGAAAACTCCGAGAGGGACCGCTTCTTGCTTCTTCCC
TCTGCCACACTTCCGGGAAGACCAGAGTCCAACGGTCTGCCGTCGTCGCT
GATTTTGGAAAACTCCGAGAGGGACCGCTTCTTGCTTCTTCCCTCTGCCA
CACTTCCGGGAAGACCAGAGTCCAACGGCACGGCGTTCTCCGGAGAGATG
GTTCTCAACCGCTGCGACCCGTGGTGGCTGCGCTGCGTAGGGGGCGGTGC
GCGGCACCACCTGTACCCAGTGCACGTTAGTTGCTGCCTTCTCTCCACAC
CTTCCCTCGCCGCGGCGTTGTACCTGCTCGTGTCGAGATTTGTCGCGGGG
CAATACGACCAGGGCACGGCGTTCTCCGGAGAGATGGTTCTCAACCGCTG
CGACCCGTGGTGGCTGCGCTGCGTAGGGGGCGGTGCGCGGCACCACCTGT
ACCCAGTGCACGTTAGTTGCTGCCTTCTCTCCACACCTTCCCTCGCCGCG
GCGTTGTACCTGCTCGTGTCGAGATTTGTCGCGGGGCAATACGACCAGGT
GTTCTCTATGGTGGAGGGATGCGTGACAGACCTTCCGCTAGGCAAGGAGG
AGGCAGGAAGCCTTCGGTGGCTTGGGCACCTGGAGCACGACCACCACCCG
GACGCCGTTGCGTGCCGGTTGAAGCTCAGCCTCGCCGCCGCGCCGTGCGT
GTTCTCTATGGTGGAGGGATGCGTGACAGACCTTCCGCTAGGCAAGGAGG
AGGCAGGAAGCCTTCGGTGGCTTGGGCACCTGGAGCACGACCACCACCCG
GACGCCGTTGCGTGCCGGTTGAAGCTCAGCCTCGCCGCCGCGCCGTGC
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