mRNA_S-dermatodea_contig13261.1938.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13261.1938.1
Unique NamemRNA_S-dermatodea_contig13261.1938.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 1.610e-70
Identity = 101/118 (85.59%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPRI 354
            QVGRYYT+QKYANHWDAFDL TEDGRRFA NGGQRVCTVLVYLNDV SGGCT+FP+LG+ V+P+KGMAVVFFPATLDG LD  LLHAAEPA+DTKWVSQIWIRQG YHGTP+ARIP I
Sbjct:  177 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 294          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A7S1UYE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.310e-52
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPRI*G 360
            QVGRY+ +Q+Y  H+DAFDL+ EDGRRFA NGGQR  TVLVYLNDV  GG TSFP L + V+P++GMA+VFFPAT+DG LD M LHAA PAVDTK+VSQ+WIRQG Y G PS R+P+  G
Sbjct:  270 QVGRYFPSQQYLQHFDAFDLSNEDGRRFASNGGQRTVTVLVYLNDVHQGGATSFPALNLDVQPRRGMAIVFFPATVDGYLDKMALHAANPAVDTKYVSQVWIRQGEYKGQPSKRLPQTMG 389          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A835YJM0_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA)

HSP 1 Score: 172 bits (436), Expect = 8.070e-52
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPR 351
            QVGRY  TQ YA H DAFDL T+DG RFA NGGQRV TVL+YLNDV  GG TSFPRLG++V P++GMAVVFFP+TLDG  D + LH AEPAVD K+VSQIWIRQG Y G P+ R+ R
Sbjct:  100 QVGRYLPTQFYAPHLDAFDLKTQDGMRFAQNGGQRVATVLIYLNDVPRGGNTSFPRLGLSVTPRRGMAVVFFPSTLDGCADELALHTAEPAVDVKYVSQIWIRQGLYTGEPTRRLLR 216          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A7S3KY14_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KY14_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.350e-50
Identity = 80/120 (66.67%), Postives = 96/120 (80.00%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPRI*G 360
            QVGRY  +Q+Y  H+DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP L + V+P +GMA++FFPAT+DG LD M LHAA PAVDTK+VSQ+WIRQG+Y+G PS R+P   G
Sbjct:  280 QVGRYMASQQYLQHYDAFDLSTEDGRRFASNGGQRTITVLIYLNDVHQGGATRFPALNLDVQPVRGMALIFFPATIDGMLDQMSLHAALPAVDTKYVSQVWIRQGSYNGQPSKRLPATLG 399          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A6U0TVS1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0TVS1_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.910e-50
Identity = 80/115 (69.57%), Postives = 95/115 (82.61%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARI 345
            QVGRY  TQ+Y  H+DAFDL++EDGRRFA NGGQR  T+LVYLNDV++GG T FPRL I V+P++GMA+VFFPAT+DGTLD M LHAA PAVD K+VSQ+WIRQ  Y G PS R+
Sbjct:  194 QVGRYLPTQQYLQHFDAFDLSSEDGRRFASNGGQRTITILVYLNDVSTGGNTVFPRLNIQVQPRRGMALVFFPATVDGTLDKMTLHAALPAVDVKYVSQVWIRQTNYDGVPSKRL 308          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A1Z5JHE4_FISSO (P4Hc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHE4_FISSO)

HSP 1 Score: 170 bits (430), Expect = 2.050e-50
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPRI*G 360
            QVGRY+  +KY  H+DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP L + ++P++GMA+VFFPAT+DG LD M LHAA PA+DTK+VSQ+WIRQ  Y+G PS R+ +  G
Sbjct:   99 QVGRYFYQEKYLQHFDAFDLSTEDGRRFAANGGQRTVTVLIYLNDVMRGGATRFPALNLDIQPRRGMALVFFPATVDGMLDKMALHAALPAIDTKFVSQVWIRQSIYNGQPSKRLQQTLG 218          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A8J2S9J3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.670e-50
Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPRI 354
            QVGRY   + Y  H+DAFD ++ DGRRFA NGGQRV TVLVYLNDVA GGCTSF +LG++++PKKG A+VFFPA+LDG LD   LHAAEPA+D KWVSQIWIRQ  Y+G  S RI  I
Sbjct:  124 QVGRYRGGEFYKAHYDAFDTSSPDGRRFAQNGGQRVATVLVYLNDVARGGCTSFSKLGLSIQPKKGTALVFFPASLDGMLDQHYLHAAEPALDLKWVSQIWIRQKAYNGLASVRIAPI 241          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A7S0CAB3_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAB3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.090e-49
Identity = 81/130 (62.31%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVA--SGGCTSFPRLG------ITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIPRI*GKG 366
            QVGRYY +Q+Y +H+DAFDL   DGRRFA+NGGQRV TVLVYLND+A   GGCT+FPRL       + VRP++G A+VFFPA++DG LD   LHAAEPA+DTK+VSQ+WIRQG Y G P+ R+  + G G
Sbjct:  102 QVGRYYPSQQYRSHYDAFDLDDVDGRRFAENGGQRVVTVLVYLNDLAVGRGGCTAFPRLKTSSGEVLRVRPERGKAIVFFPASVDGLLDTDALHAAEPALDTKYVSQVWIRQGEYKGVPTKRLASVHGSG 231          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A6U3RVV9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RVV9_9STRA)

HSP 1 Score: 171 bits (433), Expect = 5.530e-49
Identity = 81/115 (70.43%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARI 345
            QVGRY  +Q+Y  H+DAFDL+ EDGRRFA NGGQR  TVLVYLNDV+ GG T+FP L I V+PK+GMA+VFFPAT+DG LD M LHAA PAVD K+VSQ+WIRQG Y G PS RI
Sbjct:  274 QVGRYLPSQQYLQHFDAFDLSNEDGRRFASNGGQRTVTVLVYLNDVSRGGQTAFPSLNIEVQPKQGMALVFFPATVDGYLDKMALHAALPAVDPKYVSQVWIRQGNYEGQPSKRI 388          
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Match: A0A7S2UA87_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA87_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.160e-48
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 QVGRYYTTQKYANHWDAFDLATEDGRRFADNGGQRVCTVLVYLNDVASGGCTSFPRLGITVRPKKGMAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARI 345
            Q+GRY  +QKY  H+DAFDL  E GRRFA NGGQR  TVL+YLNDV +GG T+FP L + V+P++GMA+VFFPAT+DG LD M LHAA PA+DTK+VSQ+WIRQG Y G PS  +
Sbjct:  145 QIGRYLPSQKYLQHFDAFDLGDEHGRRFASNGGQRTVTVLLYLNDVMNGGHTTFPSLNLEVKPRRGMAIVFFPATIDGYLDKMALHAALPAIDTKFVSQVWIRQGNYEGQPSKHL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13261.1938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K6_ECTSI1.610e-7085.59P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S1UYE3_9STRA2.310e-5268.33Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A835YJM0_9STRA8.070e-5270.09Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S3KY14_9STRA1.350e-5066.67Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U0TVS1_9STRA1.910e-5069.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1Z5JHE4_FISSO2.050e-5064.17P4Hc domain-containing protein n=2 Tax=Fistulifera... [more]
A0A8J2S9J3_9STRA3.670e-5067.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0CAB3_9STRA5.090e-4962.31Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A6U3RVV9_9STRA5.530e-4970.43Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2UA87_9STRA1.160e-4865.22Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13261contigS-dermatodea_contig13261:1940..2946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7G2K6
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size413
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13261.1938.1prot_S-dermatodea_contig13261.1938.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13261 2732..2890 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.270914-UTR-S-dermatodea_contig13261:1939..21351622924280.270914-UTR-S-dermatodea_contig13261:1939..2135Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13261 1940..2135 +
1694079147.250904-UTR-S-dermatodea_contig13261:1939..21351694079147.250904-UTR-S-dermatodea_contig13261:1939..2135Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13261 1940..2135 +
1622924280.282279-UTR-S-dermatodea_contig13261:2729..27311622924280.282279-UTR-S-dermatodea_contig13261:2729..2731Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13261 2730..2731 +
1694079147.2716222-UTR-S-dermatodea_contig13261:2729..27311694079147.2716222-UTR-S-dermatodea_contig13261:2729..2731Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13261 2730..2731 +
1622924280.3003876-UTR-S-dermatodea_contig13261:2890..29461622924280.3003876-UTR-S-dermatodea_contig13261:2890..2946Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13261 2891..2946 +
1694079147.289528-UTR-S-dermatodea_contig13261:2890..29461694079147.289528-UTR-S-dermatodea_contig13261:2890..2946Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13261 2891..2946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.2901793-CDS-S-dermatodea_contig13261:2731..28901622924280.2901793-CDS-S-dermatodea_contig13261:2731..2890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13261 2732..2890 +
1694079147.2808337-CDS-S-dermatodea_contig13261:2731..28901694079147.2808337-CDS-S-dermatodea_contig13261:2731..2890Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13261 2732..2890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13261.1938.1

>prot_S-dermatodea_contig13261.1938.1 ID=prot_S-dermatodea_contig13261.1938.1|Name=mRNA_S-dermatodea_contig13261.1938.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
MAVVFFPATLDGTLDPMLLHAAEPAVDTKWVSQIWIRQGTYHGTPSARIP
RI*
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mRNA from alignment at S-dermatodea_contig13261:1940..2946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13261.1938.1 ID=mRNA_S-dermatodea_contig13261.1938.1|Name=mRNA_S-dermatodea_contig13261.1938.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1007bp|location=Sequence derived from alignment at S-dermatodea_contig13261:1940..2946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGGGCGGTACTACACCACCCAGAAGTATGCGAACCACTGGGACGC CTTCGATCTCGCCACCGAGGACGGCCGTCGCTTCGCAGACAACGGGGGCC AGCGCGTGTGCACGGTGCTGGTGTACCTCAACGACGTGGCCTCGGGCGGA TGCACCAGCTTCCCGCGGCTCGGCATCACGGTCCGGCCCAAGAAAGGTGG GGGGGGGGGGGAGAGGGGGGGCGGGGGGTATCGCCCAGGCGCTCAGGACA AAGACTCTCGTACCATAACCGTATAACATCATACCTGGTACATGATACTA CACCACATCATAGCATCATACGTAACAAGTGAGCCTAGCCTCCATGGGCG TGTTTAACAGCTTGGACCATATATCATAACATATAATACCACCGCCACCT ACTATTAATACTAATATTATTATAGTATTATAGTACGCAGTGCGGCGAGG AGCAAAGCCACGGTTTGGGCGCTGTTCGATACAAGTACAACTATGTACAA GTTTTTTCTTTCGTTTTTTCCTTCCTCCTTTTTTTACTGGTTTTTATCTC ATGGCAATAATGTTCATATGATAACGCCTACTGGTACAAGTATATATATA TATATACAGTAACCTAACACTATGCTTCTCCCCCTTTTTATTTCTATTTT TTTGGCTTCTCTCTCTCGTTCGTTTCGGTTGTTTGCCGAGTTCCTATCAT TTATCATACCGCCGTATGTATTTATTTATTCCTTTCCTTTCCTTTCCATT TTTTTGTTTCTAAATGTTTTTTTCTTCTTCTTTTTTTCAGGCATGGCGGT GGTGTTCTTCCCTGCAACGCTCGACGGGACCTTGGACCCGATGCTGCTTC ACGCGGCCGAGCCGGCGGTCGACACGAAGTGGGTTTCCCAGATCTGGATC CGGCAGGGCACCTACCACGGAACCCCGAGCGCGAGAATCCCGCGCATTTA GGGAAAGGGGGGGTTCGATCGAGGTCTCTGGTCGTTTCACTCAACTTTAA CTTTCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13261:1940..2946+

>mRNA_S-dermatodea_contig13261.1938.1 ID=mRNA_S-dermatodea_contig13261.1938.1|Name=mRNA_S-dermatodea_contig13261.1938.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig13261:1940..2946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGTGGTGTTCTTCCCTGCAACGCTCGACGGGACCTTGGACCCGAT
GCTGCTTCACGCGGCCGAGCCGGCGGTCGACACGAAGTGGGTTTCCCAGA
TCTGGATCCGGCAGGGCACCTACCACGGAACCCCGAGCGCGAGAATCCCG
CGCATTTAGATGGCGGTGGTGTTCTTCCCTGCAACGCTCGACGGGACCTT
GGACCCGATGCTGCTTCACGCGGCCGAGCCGGCGGTCGACACGAAGTGGG
TTTCCCAGATCTGGATCCGGCAGGGCACCTACCACGGAACCCCGAGCGCG
AGAATCCCGCGCATTTAG
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