mRNA_S-dermatodea_contig1320.1908.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 308 bits (789), Expect = 3.680e-96 Identity = 210/375 (56.00%), Postives = 236/375 (62.93%), Query Frame = 1
Query: 298 RELPPLSEDA-----SAALGSL----TRAPRVYVGGGGSHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVV----------------RNVGKSR-----RAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPG--PPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSA-ADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARA----RR-----NITGGRNG-AAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWAS 1293
R LPPL A + AL L TRAPRVY+ G ++L+ GQ V L+PEQ RYLVSVMRLRDGS VRVFDGVNGEF A V +G R R KRST + ELR+ECLTRRQP G+ P +EL+FAPIRKQRLK+LVEKAVEVGASRLTPVLTARTQ A +D + L +LG +TAVEAAEQCERMTVP V A+PV LAS L LE R S G R+ G + D+VFVCKERDVDAPPLL+ALA+Y +A RR + G RN AAFLIGPEGGFD EI LA P V+FVSLG TVLRAETAAVYALS WSAFWAS
Sbjct: 115 RPLPPLGVPARIAGVNPALVPLPSPPTRAPRVYLNG--ANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPV-ASPVTLASYLRSLELRQSSCDLSSIIGLARDRG------------GDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 474
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 263 bits (672), Expect = 5.420e-81 Identity = 177/313 (56.55%), Postives = 197/313 (62.94%), Query Frame = 1
Query: 451 MRLRDGSQVRVFDGVNGEFKAVV--------------RNVGKSR-----RAKRSTAKDTEQAELRIECLTRRQPT--SSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSA-ADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARA----RR-----NITGGRNG-AAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWAS 1293
MRLRDG+ VRVFDGVNGEF A V +G R R KRS + ELR+ECLTRRQP GE P +EL+FAPIRKQRLK+LVEKAVEVGASRLTPVLTARTQ A +D + L +LG +TAVEAAEQCERMTVP + A+PV LAS L LE RH S G R+ G D+VFVCKERDVDAPPLL+ALA+Y +A RR + RN AAFLIGPEGGFD EI LA P V+FVSLG TVLRAETAAVYALS WSAFWAS
Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPM-ASPVTLASYLRSLELRHSSCDGSSIVGLARD---------RDGDRS---LPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 300
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA) HSP 1 Score: 162 bits (410), Expect = 5.650e-43 Identity = 119/292 (40.75%), Postives = 157/292 (53.77%), Query Frame = 1
Query: 451 MRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAK-----RSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRAEGG 1311
MRLRDGS VR F+G +GE+ + S +K R +AK L++E R Q S D V L+ API++QR+K+LVEKA E+G + + PVLTA TQ + E T L + A+EAAEQCER+++PH+ P PL LL + +P A +FVC+ER +PPLL+ALA A A R + AAFL+GPEGGF E +LA P +Q VSLG TVLRAETAA+YALSC+S+F A++ G
Sbjct: 1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPA--LALQVEQQLRSQAEDSCADLD-------VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEALDAEGTSRLLPI--AIEAAEQCERLSLPHLH-PPAPLPELLARWHS------------------------------EPHTRARQLFVCQERSPQSPPLLEALA-AASAARGVPSSAAPAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAAAGGSSG 249
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A7Y0HFA1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HFA1_9PROT) HSP 1 Score: 136 bits (342), Expect = 2.890e-33 Identity = 114/310 (36.77%), Postives = 150/310 (48.39%), Query Frame = 1
Query: 391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRAEGGPPP 1320
L AG+ V P+QA YL V+RL G+ + +F+G +GE+ AVV +GK+R A LR E R Q +S P V L FAP++K + +V+KA E+G SRL P+LT RTQS + L TAVEAAEQCER+ VP V P+ L L++ T R ++++C E DA PL A AAF+ GPEGGF + E+ L+ PLVQ +SLGP +LRAETAA+ AL+ W A S G PPP
Sbjct: 13 LQAGRPVEADPDQAHYLSRVLRLGAGAPLVLFNGRDGEWDAVVTEIGKNR------------ATLRPETQRRAQVSS-----------PDVWLAFAPVKKTQTDFIVQKATELGVSRLIPILTDRTQSERVRTDRL----TATAVEAAEQCERLDVPVV-VEPIRLDRLIDTWP-------------TDR----------------------MLYLCAEAG-DAQPLASAAKPGP------------AAFVTGPEGGFSQQELDLMRRSPLVQPISLGPRILRAETAAMAALAVWQAV--SGDWGGRPPP 244
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A1H4DH21_9RHOB (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H4DH21_9RHOB) HSP 1 Score: 132 bits (333), Expect = 6.340e-32 Identity = 115/304 (37.83%), Postives = 139/304 (45.72%), Query Frame = 1
Query: 391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRA 1302
L G V L QA YL +VMRL G V +F+G +GE++AV G+ A LR L R Q P ++L+FAPI+K R + EKA E+GA RL P LT T + + L AVEAAEQCE ++VP V A P PLA+LL+ EA R + VC E DAPP +DAL A R G A LIGPEGGF E L+ P V VSLGP VLRA+TAAV AL+ W A RA
Sbjct: 16 LGDGAAVALERAQAHYLFTVMRLGQGDAVALFNGRDGEWRAVATEAGRKGGA------------LRCAALLRPQAEG-----------PDLDLIFAPIKKARTDFIAEKACEMGARRLIPCLTRFTNAERVNVERL----RAHAVEAAEQCEILSVPQVLA-PAPLAALLDAWEAGRR-----------------------------------LMVCDEAR-DAPPAMDALR---AAGREAGSGPGPWAVLIGPEGGFAPEERARLSEAPFVTRVSLGPRVLRADTAAVAALALWQAALGDWRA 252
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A2E4XSR1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XSR1_9PROT) HSP 1 Score: 132 bits (332), Expect = 9.950e-32 Identity = 103/299 (34.45%), Postives = 143/299 (47.83%), Query Frame = 1
Query: 391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSA--ADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSA 1281
L+AG+ V LS Q+ YL V+RL G++V +F+G +GE++A + + ++ L +E R Q T P + L+FAPI++ RL +LV+KAVE+G SRL PVLT RT+ AD + +EAAEQCERMT+P + P P+ +L D R + VC ER A P+ L D TG + A L GPEGGF E E+ ++FVSLGP +LRAETAA+ A++CW A
Sbjct: 17 LDAGRSVDLSANQSHYLKHVLRLGPGAEVALFNGKDGEWRARIETIRRNA------------GSLGVETQIRPQITE-----------PDLWLLFAPIKRARLDMLVQKAVELGVSRLVPVLTERTEVKRLNADRH------RSNLIEAAEQCERMTLPEI-VEPRPILDVLSDFPTGRR-----------------------------------LLVCAERG-HAAPINQILEDD-------TGEADRCAILCGPEGGFAETELDAFQKLSFIRFVSLGPRILRAETAAISAVTCWQA 242
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A3D6A1M1_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3D6A1M1_9PROT) HSP 1 Score: 132 bits (331), Expect = 1.310e-31 Identity = 116/314 (36.94%), Postives = 151/314 (48.09%), Query Frame = 1
Query: 346 LTRAPRVYVGGGGSHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHR----DAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCW 1275
+ PR+YV + L+ G + L EQA YLV+VMR GS VRVF+G +GE++AVV + + + A L++E R Q G P + L FAP++K R +VEKA E+GA+ + PV+T RTQS + L M A EAAEQ ER+ +P V PV L LL D HR D A G G A P+LD L RA + +G LIGPEGGFD+AE L S P V+ V+LGP +LRA+TAAV AL+ W
Sbjct: 1 MVTTPRLYVD---APLDDGAELILPREQAHYLVNVMRREAGSPVRVFNGRDGEWQAVVADASR------------KGASLQVETRLREQV-----------GVPPLRLCFAPVKKARTDFIVEKATELGAAVIQPVITRRTQSERVRTDRL----MALATEAAEQTERLCLPVVS-EPVTLERLLADWPEDHRLIFCDEAGDGEGAWGGPQG-----------------------------RARPMLDVL----RAEPDPSGPWT---VLIGPEGGFDDAERARLRSLPFVRAVTLGPRILRADTAAVAALTLW 247
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: UPI001F5B5D51 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI001F5B5D51) HSP 1 Score: 132 bits (331), Expect = 1.720e-31 Identity = 115/306 (37.58%), Postives = 147/306 (48.04%), Query Frame = 1
Query: 391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEA-RHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGA-------AFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAF 1284
L AGQ V L+P+QA YL +V+RL G+ + +F+G +GE++A + +GK A L + R Q P V L+FAPI++ RL LVEKA E+GA+RL PV T T S + L EAAEQCER++VP V A P L LL D A RH A+ ESG APP+ +ALA RAR GGR G A L+GPEGGF EAE+ L+ P V LGP VLRA+TA + L+CW A+
Sbjct: 18 LGAGQTVGLAPQQAHYLRTVLRLSTGADLALFNGRDGEWRARIDALGKG------------WASLAVIDQRRAQQPE-----------PDVWLVFAPIKRARLDFLVEKACELGAARLLPVFTQNTDVSRVNCERL----RANCREAAEQCERLSVPEV-AEPTGLRDLLADWPADRHLLVAA------------------ESG-------------------HAPPVAEALA---RAREQA-GGRAGVPASAAPWAVLVGPEGGFTEAELDALSKLPFVTAAGLGPRVLRADTAGIALLACWQAW 254
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT) HSP 1 Score: 130 bits (328), Expect = 4.780e-31 Identity = 111/294 (37.76%), Postives = 142/294 (48.30%), Query Frame = 1
Query: 391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSC 1272
L AG V L EQ+ YL +VMR + V +F+G +GE+ + +GK E A LR RR+P V L+FAP++K RL LVEK+VE+G SRL+PV+T T + L A EAAEQCER+T+P V A P+ LA LL+ E R P V A +F ER + APP+ AL + A + AFLIGPEGGF E+ LL P V VSLGP +LRAETAA+ AL+C
Sbjct: 21 LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAALGKHH---------GEVAILRQMHGQRREPN--------------VRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARL----RAQAREAAEQCERLTLPTVDA-PIALAQLLDQWE---------------RLP----------------VGAPPLFAAVER-LSAPPIAQALQNVAEVQER--------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVALAC 246
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A418VYB8_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Azospirillum cavernae TaxID=2320860 RepID=A0A418VYB8_9PROT) HSP 1 Score: 130 bits (327), Expect = 6.290e-31 Identity = 107/317 (33.75%), Postives = 151/317 (47.63%), Query Frame = 1
Query: 361 RVYVGGGGSHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRAEGG 1311
R+YV S L GQ V L E+A +L V+RL G V VF+G +GE++AV+ GK + +R+ S++ P + L+FAP++K R+ + EKA E+G SRL PV T RT + + + L A+EAAEQCER++VP + P+PLA L D A R +F+C E +A P+ +A+ + G AA LIGPEGGFD++E+ L P V V LGP +LRA+TA V AL+CW + A+GG
Sbjct: 12 RLYVE---SPLAEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGW--------------CSLTVAQQRRVQSAA---------PDLWLLFAPLKKGRIDFVAEKATEMGVSRLWPVFTRRTDPNRVNSDRL----RANAIEAAEQCERLSVPEL-VEPLPLARALADWPADRR-----------------------------------LFLCAEAG-NARPIAEAMRET---------GPCPAALLIGPEGGFDQSELDELGKLPFVVPVGLGPRILRADTAVVAALACWQSLSGDWTADGG 252 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1320.1908.1 >prot_S-dermatodea_contig1320.1908.1 ID=prot_S-dermatodea_contig1320.1908.1|Name=mRNA_S-dermatodea_contig1320.1908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=421bp MVRGWCLLLSFLVPLVRQSIGFCLVAPGEWRVGSRVRNETKRTKHSDSSVback to top mRNA from alignment at S-dermatodea_contig1320:1754..3526+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1320.1908.1 ID=mRNA_S-dermatodea_contig1320.1908.1|Name=mRNA_S-dermatodea_contig1320.1908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1773bp|location=Sequence derived from alignment at S-dermatodea_contig1320:1754..3526+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1320:1754..3526+ >mRNA_S-dermatodea_contig1320.1908.1 ID=mRNA_S-dermatodea_contig1320.1908.1|Name=mRNA_S-dermatodea_contig1320.1908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at S-dermatodea_contig1320:1754..3526+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |