mRNA_S-dermatodea_contig1320.1908.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1320.1908.1
Unique NamemRNA_S-dermatodea_contig1320.1908.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 3.680e-96
Identity = 210/375 (56.00%), Postives = 236/375 (62.93%), Query Frame = 1
Query:  298 RELPPLSEDA-----SAALGSL----TRAPRVYVGGGGSHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVV----------------RNVGKSR-----RAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPG--PPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSA-ADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARA----RR-----NITGGRNG-AAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWAS 1293
            R LPPL   A     + AL  L    TRAPRVY+ G  ++L+ GQ V L+PEQ RYLVSVMRLRDGS VRVFDGVNGEF A V                  +G  R     R KRST    +  ELR+ECLTRRQP     G+        P +EL+FAPIRKQRLK+LVEKAVEVGASRLTPVLTARTQ  A +D + L +LG +TAVEAAEQCERMTVP V A+PV LAS L  LE R      S   G  R+ G              +   D+VFVCKERDVDAPPLL+ALA+Y +A    RR     +  G RN  AAFLIGPEGGFD  EI  LA  P V+FVSLG TVLRAETAAVYALS WSAFWAS
Sbjct:  115 RPLPPLGVPARIAGVNPALVPLPSPPTRAPRVYLNG--ANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPV-ASPVTLASYLRSLELRQSSCDLSSIIGLARDRG------------GDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 474          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 5.420e-81
Identity = 177/313 (56.55%), Postives = 197/313 (62.94%), Query Frame = 1
Query:  451 MRLRDGSQVRVFDGVNGEFKAVV--------------RNVGKSR-----RAKRSTAKDTEQAELRIECLTRRQPT--SSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSA-ADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARA----RR-----NITGGRNG-AAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWAS 1293
            MRLRDG+ VRVFDGVNGEF A V                +G  R     R KRS     +  ELR+ECLTRRQP       GE      P +EL+FAPIRKQRLK+LVEKAVEVGASRLTPVLTARTQ  A +D + L +LG +TAVEAAEQCERMTVP + A+PV LAS L  LE RH     S   G  R+           G        D+VFVCKERDVDAPPLL+ALA+Y +A    RR     +    RN  AAFLIGPEGGFD  EI  LA  P V+FVSLG TVLRAETAAVYALS WSAFWAS
Sbjct:    1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPM-ASPVTLASYLRSLELRHSSCDGSSIVGLARD---------RDGDRS---LPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSAFWAS 300          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.650e-43
Identity = 119/292 (40.75%), Postives = 157/292 (53.77%), Query Frame = 1
Query:  451 MRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAK-----RSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRAEGG 1311
            MRLRDGS VR F+G +GE+   +     S  +K     R +AK      L++E   R Q   S    D       V L+ API++QR+K+LVEKA E+G + + PVLTA TQ +   E T   L +  A+EAAEQCER+++PH+   P PL  LL    +                              +P   A  +FVC+ER   +PPLL+ALA  A A R +      AAFL+GPEGGF   E  +LA  P +Q VSLG TVLRAETAA+YALSC+S+F A++    G
Sbjct:    1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPA--LALQVEQQLRSQAEDSCADLD-------VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEALDAEGTSRLLPI--AIEAAEQCERLSLPHLH-PPAPLPELLARWHS------------------------------EPHTRARQLFVCQERSPQSPPLLEALA-AASAARGVPSSAAPAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYSSFAAAAGGSSG 249          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A7Y0HFA1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HFA1_9PROT)

HSP 1 Score: 136 bits (342), Expect = 2.890e-33
Identity = 114/310 (36.77%), Postives = 150/310 (48.39%), Query Frame = 1
Query:  391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRAEGGPPP 1320
            L AG+ V   P+QA YL  V+RL  G+ + +F+G +GE+ AVV  +GK+R            A LR E   R Q +S           P V L FAP++K +   +V+KA E+G SRL P+LT RTQS     + L      TAVEAAEQCER+ VP V   P+ L  L++                T R                      ++++C E   DA PL  A                 AAF+ GPEGGF + E+ L+   PLVQ +SLGP +LRAETAA+ AL+ W A   S    G PPP
Sbjct:   13 LQAGRPVEADPDQAHYLSRVLRLGAGAPLVLFNGRDGEWDAVVTEIGKNR------------ATLRPETQRRAQVSS-----------PDVWLAFAPVKKTQTDFIVQKATELGVSRLIPILTDRTQSERVRTDRL----TATAVEAAEQCERLDVPVV-VEPIRLDRLIDTWP-------------TDR----------------------MLYLCAEAG-DAQPLASAAKPGP------------AAFVTGPEGGFSQQELDLMRRSPLVQPISLGPRILRAETAAMAALAVWQAV--SGDWGGRPPP 244          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A1H4DH21_9RHOB (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H4DH21_9RHOB)

HSP 1 Score: 132 bits (333), Expect = 6.340e-32
Identity = 115/304 (37.83%), Postives = 139/304 (45.72%), Query Frame = 1
Query:  391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRA 1302
            L  G  V L   QA YL +VMRL  G  V +F+G +GE++AV    G+   A            LR   L R Q              P ++L+FAPI+K R   + EKA E+GA RL P LT  T +   +   L       AVEAAEQCE ++VP V A P PLA+LL+  EA  R                                   + VC E   DAPP +DAL     A R    G    A LIGPEGGF   E   L+  P V  VSLGP VLRA+TAAV AL+ W A     RA
Sbjct:   16 LGDGAAVALERAQAHYLFTVMRLGQGDAVALFNGRDGEWRAVATEAGRKGGA------------LRCAALLRPQAEG-----------PDLDLIFAPIKKARTDFIAEKACEMGARRLIPCLTRFTNAERVNVERL----RAHAVEAAEQCEILSVPQVLA-PAPLAALLDAWEAGRR-----------------------------------LMVCDEAR-DAPPAMDALR---AAGREAGSGPGPWAVLIGPEGGFAPEERARLSEAPFVTRVSLGPRVLRADTAAVAALALWQAALGDWRA 252          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A2E4XSR1_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XSR1_9PROT)

HSP 1 Score: 132 bits (332), Expect = 9.950e-32
Identity = 103/299 (34.45%), Postives = 143/299 (47.83%), Query Frame = 1
Query:  391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSA--ADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSA 1281
            L+AG+ V LS  Q+ YL  V+RL  G++V +F+G +GE++A +  + ++               L +E   R Q T            P + L+FAPI++ RL +LV+KAVE+G SRL PVLT RT+     AD +          +EAAEQCERMT+P +   P P+  +L D     R                                   + VC ER   A P+   L D        TG  +  A L GPEGGF E E+        ++FVSLGP +LRAETAA+ A++CW A
Sbjct:   17 LDAGRSVDLSANQSHYLKHVLRLGPGAEVALFNGKDGEWRARIETIRRNA------------GSLGVETQIRPQITE-----------PDLWLLFAPIKRARLDMLVQKAVELGVSRLVPVLTERTEVKRLNADRH------RSNLIEAAEQCERMTLPEI-VEPRPILDVLSDFPTGRR-----------------------------------LLVCAERG-HAAPINQILEDD-------TGEADRCAILCGPEGGFAETELDAFQKLSFIRFVSLGPRILRAETAAISAVTCWQA 242          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A3D6A1M1_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Maricaulaceae TaxID=2800061 RepID=A0A3D6A1M1_9PROT)

HSP 1 Score: 132 bits (331), Expect = 1.310e-31
Identity = 116/314 (36.94%), Postives = 151/314 (48.09%), Query Frame = 1
Query:  346 LTRAPRVYVGGGGSHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHR----DAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCW 1275
            +   PR+YV    + L+ G  + L  EQA YLV+VMR   GS VRVF+G +GE++AVV +  +            + A L++E   R Q            G P + L FAP++K R   +VEKA E+GA+ + PV+T RTQS     + L    M  A EAAEQ ER+ +P V   PV L  LL D    HR    D A  G        G                              A P+LD L    RA  + +G       LIGPEGGFD+AE   L S P V+ V+LGP +LRA+TAAV AL+ W
Sbjct:    1 MVTTPRLYVD---APLDDGAELILPREQAHYLVNVMRREAGSPVRVFNGRDGEWQAVVADASR------------KGASLQVETRLREQV-----------GVPPLRLCFAPVKKARTDFIVEKATELGAAVIQPVITRRTQSERVRTDRL----MALATEAAEQTERLCLPVVS-EPVTLERLLADWPEDHRLIFCDEAGDGEGAWGGPQG-----------------------------RARPMLDVL----RAEPDPSGPWT---VLIGPEGGFDDAERARLRSLPFVRAVTLGPRILRADTAAVAALTLW 247          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: UPI001F5B5D51 (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI001F5B5D51)

HSP 1 Score: 132 bits (331), Expect = 1.720e-31
Identity = 115/306 (37.58%), Postives = 147/306 (48.04%), Query Frame = 1
Query:  391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEA-RHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGA-------AFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAF 1284
            L AGQ V L+P+QA YL +V+RL  G+ + +F+G +GE++A +  +GK              A L +    R Q              P V L+FAPI++ RL  LVEKA E+GA+RL PV T  T  S  +   L         EAAEQCER++VP V A P  L  LL D  A RH   A+                  ESG                    APP+ +ALA   RAR    GGR G        A L+GPEGGF EAE+  L+  P V    LGP VLRA+TA +  L+CW A+
Sbjct:   18 LGAGQTVGLAPQQAHYLRTVLRLSTGADLALFNGRDGEWRARIDALGKG------------WASLAVIDQRRAQQPE-----------PDVWLVFAPIKRARLDFLVEKACELGAARLLPVFTQNTDVSRVNCERL----RANCREAAEQCERLSVPEV-AEPTGLRDLLADWPADRHLLVAA------------------ESG-------------------HAPPVAEALA---RAREQA-GGRAGVPASAAPWAVLVGPEGGFTEAELDALSKLPFVTAAGLGPRVLRADTAGIALLACWQAW 254          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A4R3J6Z2_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Varunaivibrio sulfuroxidans TaxID=1773489 RepID=A0A4R3J6Z2_9PROT)

HSP 1 Score: 130 bits (328), Expect = 4.780e-31
Identity = 111/294 (37.76%), Postives = 142/294 (48.30%), Query Frame = 1
Query:  391 LNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSC 1272
            L AG  V L  EQ+ YL +VMR    + V +F+G +GE+   +  +GK            E A LR     RR+P               V L+FAP++K RL  LVEK+VE+G SRL+PV+T  T     +   L       A EAAEQCER+T+P V A P+ LA LL+  E               R P                V A  +F   ER + APP+  AL + A  +          AFLIGPEGGF   E+ LL   P V  VSLGP +LRAETAA+ AL+C
Sbjct:   21 LTAGARVALDHEQSHYLKNVMRAGKNAPVALFNGRDGEWLGELAALGKHH---------GEVAILRQMHGQRREPN--------------VRLIFAPLKKARLDFLVEKSVELGVSRLSPVITRHTDVGRVNVARL----RAQAREAAEQCERLTLPTVDA-PIALAQLLDQWE---------------RLP----------------VGAPPLFAAVER-LSAPPIAQALQNVAEVQER--------AFLIGPEGGFSRDEVALLDKAPFVFPVSLGPRILRAETAALVALAC 246          
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Match: A0A418VYB8_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Azospirillum cavernae TaxID=2320860 RepID=A0A418VYB8_9PROT)

HSP 1 Score: 130 bits (327), Expect = 6.290e-31
Identity = 107/317 (33.75%), Postives = 151/317 (47.63%), Query Frame = 1
Query:  361 RVYVGGGGSHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGKSRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPIRKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAAEQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHDCCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGAAFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAFWASSRAEGG 1311
            R+YV    S L  GQ V L  E+A +L  V+RL  G  V VF+G +GE++AV+   GK                  +    +R+  S++         P + L+FAP++K R+  + EKA E+G SRL PV T RT  +  + + L       A+EAAEQCER++VP +   P+PLA  L D  A  R                                   +F+C E   +A P+ +A+ +          G   AA LIGPEGGFD++E+  L   P V  V LGP +LRA+TA V AL+CW +      A+GG
Sbjct:   12 RLYVE---SPLAEGQSVGLDHERAHFLRHVLRLDRGDAVAVFNGRDGEWRAVIDGFGKGW--------------CSLTVAQQRRVQSAA---------PDLWLLFAPLKKGRIDFVAEKATEMGVSRLWPVFTRRTDPNRVNSDRL----RANAIEAAEQCERLSVPEL-VEPLPLARALADWPADRR-----------------------------------LFLCAEAG-NARPIAEAMRET---------GPCPAALLIGPEGGFDQSELDELGKLPFVVPVGLGPRILRADTAVVAALACWQSLSGDWTADGG 252          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1320.1908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y9_9PHAE3.680e-9656.0016S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
D7G8G1_ECTSI5.420e-8156.5516S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A835ZHN8_9STRA5.650e-4340.7516S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A7Y0HFA1_9PROT2.890e-3336.77Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A1H4DH21_9RHOB6.340e-3237.83Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A2E4XSR1_9PROT9.950e-3234.45Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A3D6A1M1_9PROT1.310e-3136.94Ribosomal RNA small subunit methyltransferase E n=... [more]
UPI001F5B5D511.720e-3137.5816S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A4R3J6Z2_9PROT4.780e-3137.76Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A418VYB8_9PROT6.290e-3133.75Ribosomal RNA small subunit methyltransferase E n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1320contigS-dermatodea_contig1320:1754..3526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score269.6
Seed ortholog evalue2.4e-69
Seed eggNOG ortholog2880.D7G8G1
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2SA8N@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size1512
Cds size1263
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1320.1908.1prot_S-dermatodea_contig1320.1908.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1320 1838..3361 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924277.7749214-UTR-S-dermatodea_contig1320:1753..18371622924277.7749214-UTR-S-dermatodea_contig1320:1753..1837Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1320 1754..1837 +
1694079145.335304-UTR-S-dermatodea_contig1320:1753..18371694079145.335304-UTR-S-dermatodea_contig1320:1753..1837Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1320 1754..1837 +
1622924277.8046832-UTR-S-dermatodea_contig1320:3361..35261622924277.8046832-UTR-S-dermatodea_contig1320:3361..3526Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1320 3362..3526 +
1694079145.369583-UTR-S-dermatodea_contig1320:3361..35261694079145.369583-UTR-S-dermatodea_contig1320:3361..3526Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1320 3362..3526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924277.7841249-CDS-S-dermatodea_contig1320:1837..19511622924277.7841249-CDS-S-dermatodea_contig1320:1837..1951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1320 1838..1951 +
1694079145.3473563-CDS-S-dermatodea_contig1320:1837..19511694079145.3473563-CDS-S-dermatodea_contig1320:1837..1951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1320 1838..1951 +
1622924277.7923455-CDS-S-dermatodea_contig1320:2212..33611622924277.7923455-CDS-S-dermatodea_contig1320:2212..3361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1320 2213..3361 +
1694079145.361093-CDS-S-dermatodea_contig1320:2212..33611694079145.361093-CDS-S-dermatodea_contig1320:2212..3361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1320 2213..3361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1320.1908.1

>prot_S-dermatodea_contig1320.1908.1 ID=prot_S-dermatodea_contig1320.1908.1|Name=mRNA_S-dermatodea_contig1320.1908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=421bp
MVRGWCLLLSFLVPLVRQSIGFCLVAPGEWRVGSRVRNETKRTKHSDSSV
KSVGGEAEIANSPAAHHDTRQRELPPLSEDASAALGSLTRAPRVYVGGGG
SHLNAGQIVTLSPEQARYLVSVMRLRDGSQVRVFDGVNGEFKAVVRNVGK
SRRAKRSTAKDTEQAELRIECLTRRQPTSSSVGEDGYPGPPAVELMFAPI
RKQRLKILVEKAVEVGASRLTPVLTARTQSSAADENTLGKLGMMTAVEAA
EQCERMTVPHVGATPVPLASLLEDLEARHRDAASSGAAGTTREPGVVGHD
CCESGTEDPVVAADVVFVCKERDVDAPPLLDALADYARARRNITGGRNGA
AFLIGPEGGFDEAEIRLLASCPLVQFVSLGPTVLRAETAAVYALSCWSAF
WASSRAEGGPPPGNKNAAQE*
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mRNA from alignment at S-dermatodea_contig1320:1754..3526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1320.1908.1 ID=mRNA_S-dermatodea_contig1320.1908.1|Name=mRNA_S-dermatodea_contig1320.1908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1773bp|location=Sequence derived from alignment at S-dermatodea_contig1320:1754..3526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTCGTTGCCTGTTGTGGCTGCCCTGCTGTCTCCAGCCTCTGTGCGGCGA GGAAGGTGGACGTGGAGAGCGAGGCCTGGTTTGGATGGTCCGTGGCTGGT GCTTGCTCCTCTCTTTCCTGGTGCCGCTCGTGCGGCAGAGCATTGGATTC TGCCTCGTGGCGCCGGGTGAATGGCGCGTTGGATCACGAGTACGGAATGT ACGTCATGTCATGTACAGCAGAGCATGCCATATACCTGCGGTACTTGTGT AGAGCATAGATCGTTACAGCTTGTAGGTGTGTTGGGGGCATGATAAAGAA TGCTCAACGCTCTCGTTCATGAGCACCCCAGTATGGGTGAACGCATGAGC TCTGCGCTGCGCCTCTAGGATACACGTGCTTGCTGGACATGCTTCATCAA TCTCCAGAGTGTGTCCATTGCGTCCCCGCCCGGTGTCTTTGATATCTGCC CACGTGTAGGAAACCAAGCGAACGAAGCATTCCGACAGCTCTGTTAAAAG CGTCGGTGGCGAGGCCGAAATAGCGAACAGCCCAGCAGCTCATCATGATA CCCGGCAGCGAGAACTACCGCCCCTTAGTGAGGATGCCTCCGCTGCCCTG GGCTCGCTGACGCGCGCACCCCGCGTATATGTAGGCGGTGGTGGGTCACA TCTGAACGCTGGCCAGATCGTCACACTCTCGCCGGAGCAGGCGCGATACC TCGTGAGCGTTATGCGTTTGCGGGACGGCAGCCAGGTGCGTGTCTTCGAC GGCGTCAACGGCGAGTTCAAGGCCGTGGTACGCAACGTTGGCAAGAGCCG AAGAGCGAAGCGATCTACCGCCAAGGACACGGAGCAGGCAGAGCTGCGCA TAGAATGCCTCACACGGCGGCAGCCAACGAGCAGCAGCGTCGGCGAGGAC GGCTACCCCGGTCCGCCCGCCGTAGAGCTCATGTTTGCGCCCATCCGAAA GCAGCGCCTCAAGATACTTGTGGAGAAAGCGGTCGAAGTGGGTGCCTCGC GCTTGACACCCGTGCTGACCGCTCGCACGCAATCGAGCGCGGCCGACGAG AACACACTCGGCAAGCTCGGGATGATGACCGCCGTTGAGGCTGCAGAGCA GTGCGAGCGCATGACGGTTCCCCACGTCGGGGCAACGCCCGTCCCGCTGG CGTCTCTTCTGGAGGACCTCGAGGCCAGGCATCGCGATGCTGCCAGCAGC GGCGCTGCCGGAACCACGAGAGAGCCAGGTGTTGTAGGGCATGATTGTTG CGAGAGCGGTACGGAGGACCCAGTAGTCGCAGCGGACGTAGTATTTGTTT GCAAGGAGAGGGATGTAGATGCCCCACCCCTCCTAGATGCTCTCGCGGAT TATGCGCGAGCGCGACGGAATATTACTGGTGGACGTAACGGCGCCGCATT CCTGATAGGCCCGGAGGGAGGCTTCGACGAGGCGGAGATACGCTTGCTCG CATCTTGCCCGTTGGTACAATTTGTGTCTCTGGGGCCTACGGTGTTAAGA GCAGAGACTGCTGCTGTGTATGCTCTGAGTTGCTGGAGCGCGTTTTGGGC GTCAAGCCGGGCGGAAGGAGGGCCACCACCTGGAAATAAGAATGCAGCCC AAGAATAGTACTTGTATAAAAAGAGCTCACAGACCAACGCGAGAAGTGCG TACAATAATGCCAAACTACGTCCATCATTTCTCGCATCGCATTACAGTAC ATGGGAGGCACTTCTGGATTGGAGCGCCGCGTGTATGAGGATCGCACGTA CCTTCCTCGTGTGCAACTATTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1320:1754..3526+

>mRNA_S-dermatodea_contig1320.1908.1 ID=mRNA_S-dermatodea_contig1320.1908.1|Name=mRNA_S-dermatodea_contig1320.1908.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at S-dermatodea_contig1320:1754..3526+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCCGTGGCTGGTGCTTGCTCCTCTCTTTCCTGGTGCCGCTCGTGCG
GCAGAGCATTGGATTCTGCCTCGTGGCGCCGGGTGAATGGCGCGTTGGAT
CACGAGTACGGAATATGGTCCGTGGCTGGTGCTTGCTCCTCTCTTTCCTG
GTGCCGCTCGTGCGGCAGAGCATTGGATTCTGCCTCGTGGCGCCGGGTGA
ATGGCGCGTTGGATCACGAGTACGGAATGAAACCAAGCGAACGAAGCATT
CCGACAGCTCTGTTAAAAGCGTCGGTGGCGAGGCCGAAATAGCGAACAGC
CCAGCAGCTCATCATGATACCCGGCAGCGAGAACTACCGCCCCTTAGTGA
GGATGCCTCCGCTGCCCTGGGCTCGCTGACGCGCGCACCCCGCGTATATG
TAGGCGGTGGTGGGTCACATCTGAACGCTGGCCAGATCGTCACACTCTCG
CCGGAGCAGGCGCGATACCTCGTGAGCGTTATGCGTTTGCGGGACGGCAG
CCAGGTGCGTGTCTTCGACGGCGTCAACGGCGAGTTCAAGGCCGTGGTAC
GCAACGTTGGCAAGAGCCGAAGAGCGAAGCGATCTACCGCCAAGGACACG
GAGCAGGCAGAGCTGCGCATAGAATGCCTCACACGGCGGCAGCCAACGAG
CAGCAGCGTCGGCGAGGACGGCTACCCCGGTCCGCCCGCCGTAGAGCTCA
TGTTTGCGCCCATCCGAAAGCAGCGCCTCAAGATACTTGTGGAGAAAGCG
GTCGAAGTGGGTGCCTCGCGCTTGACACCCGTGCTGACCGCTCGCACGCA
ATCGAGCGCGGCCGACGAGAACACACTCGGCAAGCTCGGGATGATGACCG
CCGTTGAGGCTGCAGAGCAGTGCGAGCGCATGACGGTTCCCCACGTCGGG
GCAACGCCCGTCCCGCTGGCGTCTCTTCTGGAGGACCTCGAGGCCAGGCA
TCGCGATGCTGCCAGCAGCGGCGCTGCCGGAACCACGAGAGAGCCAGGTG
TTGTAGGGCATGATTGTTGCGAGAGCGGTACGGAGGACCCAGTAGTCGCA
GCGGACGTAGTATTTGTTTGCAAGGAGAGGGATGTAGATGCCCCACCCCT
CCTAGATGCTCTCGCGGATTATGCGCGAGCGCGACGGAATATTACTGGTG
GACGTAACGGCGCCGCATTCCTGATAGGCCCGGAGGGAGGCTTCGACGAG
GCGGAGATACGCTTGCTCGCATCTTGCCCGTTGGTACAATTTGTGTCTCT
GGGGCCTACGGTGTTAAGAGCAGAGACTGCTGCTGTGTATGCTCTGAGTT
GCTGGAGCGCGTTTTGGGCGTCAAGCCGGGCGGAAGGAGGGCCACCACCT
GGAAATAAGAATGCAGCCCAAGAATAGGAAACCAAGCGAACGAAGCATTC
CGACAGCTCTGTTAAAAGCGTCGGTGGCGAGGCCGAAATAGCGAACAGCC
CAGCAGCTCATCATGATACCCGGCAGCGAGAACTACCGCCCCTTAGTGAG
GATGCCTCCGCTGCCCTGGGCTCGCTGACGCGCGCACCCCGCGTATATGT
AGGCGGTGGTGGGTCACATCTGAACGCTGGCCAGATCGTCACACTCTCGC
CGGAGCAGGCGCGATACCTCGTGAGCGTTATGCGTTTGCGGGACGGCAGC
CAGGTGCGTGTCTTCGACGGCGTCAACGGCGAGTTCAAGGCCGTGGTACG
CAACGTTGGCAAGAGCCGAAGAGCGAAGCGATCTACCGCCAAGGACACGG
AGCAGGCAGAGCTGCGCATAGAATGCCTCACACGGCGGCAGCCAACGAGC
AGCAGCGTCGGCGAGGACGGCTACCCCGGTCCGCCCGCCGTAGAGCTCAT
GTTTGCGCCCATCCGAAAGCAGCGCCTCAAGATACTTGTGGAGAAAGCGG
TCGAAGTGGGTGCCTCGCGCTTGACACCCGTGCTGACCGCTCGCACGCAA
TCGAGCGCGGCCGACGAGAACACACTCGGCAAGCTCGGGATGATGACCGC
CGTTGAGGCTGCAGAGCAGTGCGAGCGCATGACGGTTCCCCACGTCGGGG
CAACGCCCGTCCCGCTGGCGTCTCTTCTGGAGGACCTCGAGGCCAGGCAT
CGCGATGCTGCCAGCAGCGGCGCTGCCGGAACCACGAGAGAGCCAGGTGT
TGTAGGGCATGATTGTTGCGAGAGCGGTACGGAGGACCCAGTAGTCGCAG
CGGACGTAGTATTTGTTTGCAAGGAGAGGGATGTAGATGCCCCACCCCTC
CTAGATGCTCTCGCGGATTATGCGCGAGCGCGACGGAATATTACTGGTGG
ACGTAACGGCGCCGCATTCCTGATAGGCCCGGAGGGAGGCTTCGACGAGG
CGGAGATACGCTTGCTCGCATCTTGCCCGTTGGTACAATTTGTGTCTCTG
GGGCCTACGGTGTTAAGAGCAGAGACTGCTGCTGTGTATGCTCTGAGTTG
CTGGAGCGCGTTTTGGGCGTCAAGCCGGGCGGAAGGAGGGCCACCACCTG
GAAATAAGAATGCAGCCCAAGAATAG
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