mRNA_S-dermatodea_contig13188.1902.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI) HSP 1 Score: 260 bits (664), Expect = 7.270e-82 Identity = 136/220 (61.82%), Postives = 171/220 (77.73%), Query Frame = 1
Query: 124 CLTTSRGSPATTGSQPPTPDPKELKDHATGLTLPRKKRF--SKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAG-FTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLSS 774
CLTTS A P +PD ++D ATGL LPR K+F SK LVCLGVGVR KS+A V VNVYTVGLYV+PKGAR LK +AG DP EL +D S+++ LG AG F+KYLHLVFARSVGAQ+VVDA T+VKGV+++ L +FSS+ +E VGK++ + E+V+LGWEGKD+LV+LVRDK G+V+D +LP ++F+L+LGS PVS AK AFAEGVPA L+S
Sbjct: 13 CLTTSYAKAAGLAKTPLSPD---VRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE) HSP 1 Score: 251 bits (640), Expect = 1.260e-76 Identity = 128/203 (63.05%), Postives = 162/203 (79.80%), Query Frame = 1
Query: 175 TPDPKELKDHATGLTLPRKKRF--SKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAG-FTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLSS 774
TP +++D ATGL LPR K+F SK LVCLGVGVR KS+A V VNVYTVGLYV+PKGAR LK +AG DP EL +D S+++ LG AG F+KYLHLVFARSVGAQ+VVDA T+VKGV+++ L +FSS+ +E VGK++ + E+V+LGWEGKD+LV+LVRDK G+++D ALP ++F L+LGS PVS AK AFAEGVP L+S
Sbjct: 145 TPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVTVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE) HSP 1 Score: 165 bits (417), Expect = 5.290e-45 Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 1
Query: 193 LKDHATGLTLPRKKRF-SKGDLVCLGVGVRAKSI-AVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGV 756
L D ATGL F S + LG GVRAK++ + VNVY+VGLYV+P AR L F + AEL + +KAL + K +HL FARSVGA ++V+ALTS+ GV EE+LS+FS ++L+++G ++G ETV+L D L ++VR K AG+V D+ LPKA FDLYLG +PVS EAK AFA V
Sbjct: 36 LTDAATGLDFETDVSFPSSPKMTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKEDLPKAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFASRV 225
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC) HSP 1 Score: 164 bits (415), Expect = 5.590e-45 Identity = 88/194 (45.36%), Postives = 120/194 (61.86%), Query Frame = 1
Query: 193 LKDHATGLTLPRKKRF-SKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLS 771
LKD TG+ P + F + LG G R K++ + KVNVY+VGLYV+PK A L F G L D + L K + L FAR+VGA +V DAL++VKGV E +S F S++ + +G ++ K ET+++GW +L +L+R +PAGTVVDA LPKA F+LYLG +PVS EAK AF + V +L S
Sbjct: 9 LKDKVTGIEFPCEATFPGTPKMTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 202
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A6S9GES1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GES1_HETAK) HSP 1 Score: 149 bits (375), Expect = 1.690e-37 Identity = 83/196 (42.35%), Postives = 114/196 (58.16%), Query Frame = 1
Query: 178 PDPKELKDHATGLTLPRKKRFSKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPAL 765
P L D ATG+ K F L +G GVRAK++ V VNVY+V LYVD A L + G+ +F L F K ++L FAR VG+Q+++DALT+V+GV L FS+++L A+G +G ET++LG++ + + VR+ AGTV DA L A+F LYLG+SPVS+ AK AF GV L
Sbjct: 160 PGATSLTDDATGIAFDGVKAFGGAKLAAVGAGVRAKNLGVAMVNVYSVCLYVDKPKAAKALATYKGNPGP------GVFDVLMAKNFNKVMYLKFARGVGSQKIIDALTAVEGVPAATLDEFSALLLGAMGGQIGASETIALGFDASGSMSVYVREALAGTVADATLAPAVFKLYLGASPVSQPAKDAFGAGVQTL 349
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA) HSP 1 Score: 134 bits (337), Expect = 1.290e-33 Identity = 74/174 (42.53%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 190 ELKDHATGLTLPRKKRFSKGD----LVCLGVGVRAKS-IAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFD 696
++ + TG+ P K FS L GVGVR K+ + +KVNVY +GLYVDP A K+ G D E+ +D FK L GF K +++ +AR+VG +VVDAL V AL F +++ G +G ET++LGWEGKDKLV+ VRDK GTV A L +A+F+
Sbjct: 30 KVTEPVTGIDFPVTKSFSLNSTSPTLTLTGVGVRVKALVGPLKVNVYGMGLYVDPSRAARAFSKYKGKDAKEVAKDDDFFKILHSPGFAKAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVFE 203
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: W7TMS0_9STRA (Chalcone isomerase-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS0_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.320e-33 Identity = 89/252 (35.32%), Postives = 130/252 (51.59%), Query Frame = 1
Query: 22 RQVNSLAVAAAFALFAMFLFCARDEHGTWRNDYSCLTTSRGSPATTGSQPPTPDPKELKDHATGLTLPRKKRFSKG----DLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQ--AGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVP 759
R + + + ALF L C D +G ND +C KE+ D TGL P + G +L LGVG R K++ VV+VNVY VGLY++ G LK F G L ++ + L + +G + L+L+FAR+V A ++V+AL +V GV +E ++ F +L A+G ++ + ET++L W D+L + VRDKP T L + IF+LYLG P+S EAK FA P
Sbjct: 362 RNIMARSCIFRLALFCAILLCLSDGYGKTSND-TCEVKG----------------KEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETS-LLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAP 595
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A7S1JL13_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JL13_9ALVE) HSP 1 Score: 126 bits (317), Expect = 2.360e-31 Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 331 VDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLS 771
V+PK A L F G L D + L K + L FAR+VGA +V DAL++VKGV E +S F S++ + +G ++ K ET+++GW +L +L+R +PAGTVVDA LPKA F+LYLG +PVS EAK AF + V +L S
Sbjct: 1 VEPKEASKALSSFKGESEESLMNDDRFYDTLLGKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 147
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.310e-28 Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 1
Query: 190 ELKDHATGLTL-PRKKRFSKGDLVCLGVGVRAKSIAVVK-VNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAG-FTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVG-KNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPAL 765
+L + ATG+ L P L C+G+GVR + V+VY +GLY+D GAR LK F +L Q + AL + G FT+Y+ L F R V +V DALT+V+GV + + ++ A+G K G+T++LG+EGKD+LV++ K G V LP A+F LYLG P+ AK A A+GV L
Sbjct: 153 DLVEPATGIVLWPTDSFNGSPPLTCVGLGVRTVPVLYFSSVHVYVMGLYIDAVGARKALKAFLPLPAEDLAQKPEFYSALLKPGVFTRYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGVAKL 348
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA) HSP 1 Score: 125 bits (314), Expect = 2.880e-28 Identity = 99/310 (31.94%), Postives = 129/310 (41.61%), Query Frame = 1
Query: 205 ATGLTLPRKKRFS-KGDLVCLGVGVRAKSIAVVKVNVYTVGL----YVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQ----------------------------------------------------------------------------------------------AGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIF------------------------DLYLGSSPVSREAKAAFAEGVPAL 765
ATG++L F L C+G GVRAKS+AVV VNVY +GL YV+ + A L K+AG PAE +D ++ L + A + +YL L FAR V A +V DALT+V+GV+ + L F+ ++ A+G V G+T++LGWEGKD+LV++VR K AG V DAALP AIF LYLGS PVS AKAAFA GV A+
Sbjct: 120 ATGISLRATDTFGGSAPLRCVGAGVRAKSLAVVSVNVYALGLCVALYVETRAAAKALAKYAGVAPAERAKDAGFYEELMKPHPYLMPNPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRAXXXXXXXXXTKVSVLVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAYPRYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSAI 429 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13188.1902.1 >prot_S-dermatodea_contig13188.1902.1 ID=prot_S-dermatodea_contig13188.1902.1|Name=mRNA_S-dermatodea_contig13188.1902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=255bp MPSRQVNSLAVAAAFALFAMFLFCARDEHGTWRNDYSCLTTSRGSPATTGback to top mRNA from alignment at S-dermatodea_contig13188:4750..6661- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13188.1902.1 ID=mRNA_S-dermatodea_contig13188.1902.1|Name=mRNA_S-dermatodea_contig13188.1902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1912bp|location=Sequence derived from alignment at S-dermatodea_contig13188:4750..6661- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13188:4750..6661- >mRNA_S-dermatodea_contig13188.1902.1 ID=mRNA_S-dermatodea_contig13188.1902.1|Name=mRNA_S-dermatodea_contig13188.1902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at S-dermatodea_contig13188:4750..6661- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |