mRNA_S-dermatodea_contig13188.1902.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13188.1902.1
Unique NamemRNA_S-dermatodea_contig13188.1902.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: D7G2G9_ECTSI (Similar to Chalcone Isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G9_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 7.270e-82
Identity = 136/220 (61.82%), Postives = 171/220 (77.73%), Query Frame = 1
Query:  124 CLTTSRGSPATTGSQPPTPDPKELKDHATGLTLPRKKRF--SKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAG-FTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLSS 774
            CLTTS    A     P +PD   ++D ATGL LPR K+F  SK  LVCLGVGVR KS+A V VNVYTVGLYV+PKGAR  LK +AG DP EL +D S+++ LG AG F+KYLHLVFARSVGAQ+VVDA T+VKGV+++ L +FSS+ +E VGK++ + E+V+LGWEGKD+LV+LVRDK  G+V+D +LP ++F+L+LGS PVS  AK AFAEGVPA L+S
Sbjct:   13 CLTTSYAKAAGLAKTPLSPD---VRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVNVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSINREESVTLGWEGKDRLVVLVRDKEIGSVIDESLPASVFNLFLGSDPVSPVAKTAFAEGVPAFLAS 229          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A6H5KHX0_9PHAE (FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX0_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 1.260e-76
Identity = 128/203 (63.05%), Postives = 162/203 (79.80%), Query Frame = 1
Query:  175 TPDPKELKDHATGLTLPRKKRF--SKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAG-FTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLSS 774
            TP   +++D ATGL LPR K+F  SK  LVCLGVGVR KS+A V VNVYTVGLYV+PKGAR  LK +AG DP EL +D S+++ LG AG F+KYLHLVFARSVGAQ+VVDA T+VKGV+++ L +FSS+ +E VGK++ + E+V+LGWEGKD+LV+LVRDK  G+++D ALP ++F L+LGS PVS  AK AFAEGVP  L+S
Sbjct:  145 TPLSPDVRDPATGLVLPRTKQFASSKTGLVCLGVGVRVKSVAFVTVNVYTVGLYVEPKGARKALKSYAGRDPEELSKDKSVYRVLGGAGDFSKYLHLVFARSVGAQKVVDAFTAVKGVNQDVLDKFSSLTMEGVGKSIDREESVTLGWEGKDRLVVLVRDKEIGSIIDEALPASVFSLFLGSDPVSPVAKTAFAEGVPPFLAS 347          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A0G4GWT2_9ALVE (Chalcone_isomerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWT2_9ALVE)

HSP 1 Score: 165 bits (417), Expect = 5.290e-45
Identity = 94/190 (49.47%), Postives = 124/190 (65.26%), Query Frame = 1
Query:  193 LKDHATGLTLPRKKRF-SKGDLVCLGVGVRAKSI-AVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGV 756
            L D ATGL       F S   +  LG GVRAK++   + VNVY+VGLYV+P  AR  L  F   + AEL +    +KAL +    K +HL FARSVGA ++V+ALTS+ GV EE+LS+FS ++L+++G ++G  ETV+L     D L ++VR K AG+V D+ LPKA FDLYLG +PVS EAK AFA  V
Sbjct:   36 LTDAATGLDFETDVSFPSSPKMTLLGAGVRAKALLGPIAVNVYSVGLYVEPSKARQTLSGFKTIEEAELAKKEDFYKALMKEDLPKAMHLKFARSVGASKIVEALTSLNGVPEESLSKFSKLLLDSIGSSIGYKETVTLSSSKPDTLDVIVRGKHAGSVRDSKLPKAFFDLYLGKNPVSSEAKKAFASRV 225          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A0G4GUV1_VITBC (Chalcone_isomerase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GUV1_VITBC)

HSP 1 Score: 164 bits (415), Expect = 5.590e-45
Identity = 88/194 (45.36%), Postives = 120/194 (61.86%), Query Frame = 1
Query:  193 LKDHATGLTLPRKKRF-SKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLS 771
            LKD  TG+  P +  F     +  LG G R K++ + KVNVY+VGLYV+PK A   L  F G     L  D   +  L      K + L FAR+VGA +V DAL++VKGV  E +S F S++ + +G ++ K ET+++GW    +L +L+R +PAGTVVDA LPKA F+LYLG +PVS EAK AF + V +L S
Sbjct:    9 LKDKVTGIEFPCEATFPGTPKMTLLGAGPRRKNLGIAKVNVYSVGLYVEPKEAAKALSSFKGESEESLMNDDRFYDTLLGKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 202          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A6S9GES1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GES1_HETAK)

HSP 1 Score: 149 bits (375), Expect = 1.690e-37
Identity = 83/196 (42.35%), Postives = 114/196 (58.16%), Query Frame = 1
Query:  178 PDPKELKDHATGLTLPRKKRFSKGDLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPAL 765
            P    L D ATG+     K F    L  +G GVRAK++ V  VNVY+V LYVD   A   L  + G+          +F  L    F K ++L FAR VG+Q+++DALT+V+GV    L  FS+++L A+G  +G  ET++LG++    + + VR+  AGTV DA L  A+F LYLG+SPVS+ AK AF  GV  L
Sbjct:  160 PGATSLTDDATGIAFDGVKAFGGAKLAAVGAGVRAKNLGVAMVNVYSVCLYVDKPKAAKALATYKGNPGP------GVFDVLMAKNFNKVMYLKFARGVGSQKIIDALTAVEGVPAATLDEFSALLLGAMGGQIGASETIALGFDASGSMSVYVREALAGTVADATLAPAVFKLYLGASPVSQPAKDAFGAGVQTL 349          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A7S2UYK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYK7_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.290e-33
Identity = 74/174 (42.53%), Postives = 101/174 (58.05%), Query Frame = 1
Query:  190 ELKDHATGLTLPRKKRFSKGD----LVCLGVGVRAKS-IAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFD 696
            ++ +  TG+  P  K FS       L   GVGVR K+ +  +KVNVY +GLYVDP  A     K+ G D  E+ +D   FK L   GF K +++ +AR+VG  +VVDAL  V      AL  F  +++   G  +G  ET++LGWEGKDKLV+ VRDK  GTV  A L +A+F+
Sbjct:   30 KVTEPVTGIDFPVTKSFSLNSTSPTLTLTGVGVRVKALVGPLKVNVYGMGLYVDPSRAARAFSKYKGKDAKEVAKDDDFFKILHSPGFAKAIYIDYARAVGVDKVVDALRLVPTEDTAALDYFCDLLVIGTGSTIGNRETMTLGWEGKDKLVVQVRDKTVGTVTSAKLVEAVFE 203          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: W7TMS0_9STRA (Chalcone isomerase-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.320e-33
Identity = 89/252 (35.32%), Postives = 130/252 (51.59%), Query Frame = 1
Query:   22 RQVNSLAVAAAFALFAMFLFCARDEHGTWRNDYSCLTTSRGSPATTGSQPPTPDPKELKDHATGLTLPRKKRFSKG----DLVCLGVGVRAKSIAVVKVNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQ--AGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVP 759
            R + + +     ALF   L C  D +G   ND +C                    KE+ D  TGL  P  +    G    +L  LGVG R K++ VV+VNVY VGLY++     G LK F G     L ++   +  L +  +G  + L+L+FAR+V A ++V+AL +V GV +E ++ F   +L A+G ++ + ET++L W   D+L + VRDKP  T     L + IF+LYLG  P+S EAK  FA   P
Sbjct:  362 RNIMARSCIFRLALFCAILLCLSDGYGKTSND-TCEVKG----------------KEVVDKVTGLVFPMHRILPHGGRGRELTLLGVGPRRKNLFVVEVNVYAVGLYLETS-LLGRLKAFRGKSSEALAKEAKYYATLMKEGSGLNRALYLIFARTVPAGKIVEALAAVDGVKKEVMADFKKSLLAAIGSSLKEKETLTLAWTPDDRLSLFVRDKPVKTFPSLELARGIFNLYLGEKPISPEAKKGFAAVAP 595          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A7S1JL13_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JL13_9ALVE)

HSP 1 Score: 126 bits (317), Expect = 2.360e-31
Identity = 67/147 (45.58%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  331 VDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPALLS 771
            V+PK A   L  F G     L  D   +  L      K + L FAR+VGA +V DAL++VKGV  E +S F S++ + +G ++ K ET+++GW    +L +L+R +PAGTVVDA LPKA F+LYLG +PVS EAK AF + V +L S
Sbjct:    1 VEPKEASKALSSFKGESEESLMNDDRFYDTLLGKEVPKLVLLKFARTVGAHKVADALSAVKGVEPEVVSEFCSLLEKGMGASIKKAETIAMGWTEDQRLDVLIRGQPAGTVVDAKLPKAFFELYLGKTPVSMEAKHAFVKRVASLFS 147          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A835Z7E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.310e-28
Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  190 ELKDHATGLTL-PRKKRFSKGDLVCLGVGVRAKSIAVVK-VNVYTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAG-FTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVG-KNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPAL 765
            +L + ATG+ L P         L C+G+GVR   +     V+VY +GLY+D  GAR  LK F      +L Q    + AL + G FT+Y+ L F R V   +V DALT+V+GV    +  +  ++  A+G K    G+T++LG+EGKD+LV++   K  G V    LP A+F LYLG  P+   AK A A+GV  L
Sbjct:  153 DLVEPATGIVLWPTDSFNGSPPLTCVGLGVRTVPVLYFSSVHVYVMGLYIDAVGARKALKAFLPLPAEDLAQKPEFYSALLKPGVFTRYIVLAFNRKVSTLKVADALTAVEGVPPPIVDAYRRLLEGALGEKGARPGDTLALGFEGKDRLVVVANGKTHGAVRSTVLPAAVFKLYLGDDPIIPAAKRAVADGVAKL 348          
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Match: A0A835ZLC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLC9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.880e-28
Identity = 99/310 (31.94%), Postives = 129/310 (41.61%), Query Frame = 1
Query:  205 ATGLTLPRKKRFS-KGDLVCLGVGVRAKSIAVVKVNVYTVGL----YVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQ----------------------------------------------------------------------------------------------AGFTKYLHLVFARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWEGKDKLVILVRDKPAGTVVDAALPKAIF------------------------DLYLGSSPVSREAKAAFAEGVPAL 765
            ATG++L     F     L C+G GVRAKS+AVV VNVY +GL    YV+ + A   L K+AG  PAE  +D   ++ L +                                                                                              A + +YL L FAR V A +V DALT+V+GV+ + L  F+ ++  A+G  V  G+T++LGWEGKD+LV++VR K AG V DAALP AIF                         LYLGS PVS  AKAAFA GV A+
Sbjct:  120 ATGISLRATDTFGGSAPLRCVGAGVRAKSLAVVSVNVYALGLCVALYVETRAAAKALAKYAGVAPAERAKDAGFYEELMKPHPYLMPNPNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKRAXXXXXXXXXTKVSVLVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTAAYPRYLLLSFARDVSAAKVTDALTAVQGVAPDVLKAFAHLLGSAIGGAVHAGDTIALGWEGKDRLVVVVRGKKAGEVKDAALPGAIFKRSVMPISDARPFCRCALLPPLRAQLYLGSDPVSPPAKAAFASGVSAI 429          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13188.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G9_ECTSI7.270e-8261.82Similar to Chalcone Isomerase n=1 Tax=Ectocarpus s... [more]
A0A6H5KHX0_9PHAE1.260e-7663.05FAPb protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A0G4GWT2_9ALVE5.290e-4549.47Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A0G4GUV1_VITBC5.590e-4545.36Chalcone_isomerase domain-containing protein n=2 T... [more]
A0A6S9GES1_HETAK1.690e-3742.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UYK7_9STRA1.290e-3342.53Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TMS0_9STRA2.320e-3335.32Chalcone isomerase-like protein n=2 Tax=Nannochlor... [more]
A0A7S1JL13_9ALVE2.360e-3145.58Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A835Z7E7_9STRA1.310e-2839.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZLC9_9STRA2.880e-2831.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13188contigS-dermatodea_contig13188:4750..6661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.7
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog4432.XP_010241349.1
GOsGO:0003674,GO:0005488,GO:0005504,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0008289,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0019752,GO:0031406,GO:0032787,GO:0033293,GO:0036094,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704
EggNOG free text desc.Belongs to the chalcone isomerase family
EggNOG OGs28IU6@1,2QQUK@2759,37SUA@33090,3GBCA@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChalcone Isomerase-like
Ec32 orthologEc-00_005930.1
Exons2
Model size1266
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13188.1902.1prot_S-dermatodea_contig13188.1902.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13188 5239..6649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.5714247-UTR-S-dermatodea_contig13188:4749..52381622924276.5714247-UTR-S-dermatodea_contig13188:4749..5238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13188 4750..5238 -
1694079144.2528977-UTR-S-dermatodea_contig13188:4749..52381694079144.2528977-UTR-S-dermatodea_contig13188:4749..5238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13188 4750..5238 -
1622924276.5965886-UTR-S-dermatodea_contig13188:6649..66611622924276.5965886-UTR-S-dermatodea_contig13188:6649..6661Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13188 6650..6661 -
1694079144.2851605-UTR-S-dermatodea_contig13188:6649..66611694079144.2851605-UTR-S-dermatodea_contig13188:6649..6661Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13188 6650..6661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.5806901-CDS-S-dermatodea_contig13188:5238..54761622924276.5806901-CDS-S-dermatodea_contig13188:5238..5476Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13188 5239..5476 -
1694079144.2678025-CDS-S-dermatodea_contig13188:5238..54761694079144.2678025-CDS-S-dermatodea_contig13188:5238..5476Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13188 5239..5476 -
1622924276.5887597-CDS-S-dermatodea_contig13188:6122..66491622924276.5887597-CDS-S-dermatodea_contig13188:6122..6649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13188 6123..6649 -
1694079144.2769895-CDS-S-dermatodea_contig13188:6122..66491694079144.2769895-CDS-S-dermatodea_contig13188:6122..6649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13188 6123..6649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13188.1902.1

>prot_S-dermatodea_contig13188.1902.1 ID=prot_S-dermatodea_contig13188.1902.1|Name=mRNA_S-dermatodea_contig13188.1902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=255bp
MPSRQVNSLAVAAAFALFAMFLFCARDEHGTWRNDYSCLTTSRGSPATTG
SQPPTPDPKELKDHATGLTLPRKKRFSKGDLVCLGVGVRAKSIAVVKVNV
YTVGLYVDPKGARGPLKKFAGSDPAELRQDVSLFKALGQAGFTKYLHLVF
ARSVGAQQVVDALTSVKGVSEEALSRFSSIMLEAVGKNVGKGETVSLGWE
GKDKLVILVRDKPAGTVVDAALPKAIFDLYLGSSPVSREAKAAFAEGVPA
LLSS*
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mRNA from alignment at S-dermatodea_contig13188:4750..6661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13188.1902.1 ID=mRNA_S-dermatodea_contig13188.1902.1|Name=mRNA_S-dermatodea_contig13188.1902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1912bp|location=Sequence derived from alignment at S-dermatodea_contig13188:4750..6661- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTCAGAAAAAATGCCTTCGAGGCAAGTAAACAGCCTGGCGGTCGCCGC CGCCTTCGCCCTCTTCGCCATGTTTCTCTTCTGCGCACGAGATGAGCACG GCACGTGGCGCAACGACTACTCCTGCCTCACAACGTCGAGGGGGAGCCCC GCCACGACCGGCTCGCAACCCCCGACGCCCGACCCGAAAGAGCTCAAGGA CCACGCGACCGGCCTGACGCTGCCGCGAAAGAAGCGATTCTCGAAGGGGG ACCTCGTGTGCCTCGGGGTAGGCGTGCGCGCCAAATCGATCGCCGTCGTG AAGGTCAACGTCTACACGGTAGGTCTGTACGTTGACCCCAAGGGGGCGCG AGGACCCCTCAAGAAGTTCGCCGGGTCGGATCCTGCAGAGTTGAGGCAGG ATGTCTCGTTGTTCAAGGCTTTGGGGCAGGCCGGGTTCACGAAGTACCTC CACCTCGTGTTCGCGAGGAGTGTGGGAGCGCAGCAGGTGGTGGACGCTCT GACGTCTGTCAAAGGCGTGAGCGAGGAGGCTTTATCCAGGTGTGCGCGTA ACCCTTGGGCAGGCTCTTGAGAGAGCTTGGTGTGACTGCGAGGGGAGCGT GTGTTGACATGCCGTATCATGGGGTGTAAACAGGAAGGGTGTACTCATTG ATCGTGCATGCCATAGTATTGGATGTAAACATGGGTACCTTGGCCGTACT CGGTCCTTGCAGTAGATCGATGGCTGGATCTCGATTTAGCTGTCCAGTTG TCGGCGGCGGCGGCGGCATGCACGGAGAATCAAGCTTTCGGCGGGAATTT GAAGGCCCGACGGCTATTCAGTTGTAAGGTCGTGCGGGCTGCAAATTTAA CATGGCGGCCCGGGAGCTCCTGTGCGATTATTGTAGTATGACGAGCTCAC CTTAGCTCGGGCTAGCATTGTGATATTCTTGACGCCCACATCCTTCCTGC CAGGGTGTGGGAAAATACCCTCTCACTTTCTCATTGACCAAGGGGAGGAA CGCTTTCCACTGCGTACTGTAGCGCCCCGACTCTCTGCATCCTCGAGGGA AACAGCGACTCAGTTGAGTGTTTGCTTTGACTTTGCCGACGCCCACCGCC TACATCTCCGCATTCACCATCGCTATATAACCCCCAAACGGCGTTGTTGT CCGCGCGATCATCGTCCTTGTTTTTTCCGTCCCAGGTTCTCATCCATCAT GCTAGAGGCGGTCGGCAAGAATGTCGGCAAGGGTGAAACCGTTTCGCTAG GCTGGGAAGGGAAGGACAAACTGGTTATCTTGGTTCGAGACAAGCCGGCG GGCACCGTGGTGGACGCCGCCCTTCCCAAGGCCATATTCGATCTGTACTT GGGGTCCAGCCCTGTCTCCCGGGAAGCTAAGGCCGCCTTCGCGGAAGGGG TGCCCGCGTTGCTTAGCAGTTGATATCGGGATTGGACGCGTCTCGTACCC GCGGCGCCCACAAGCGCTCTCCGATGTCTAGACGCTGTCGCTCTGGGTAC TGCACATTACTCGGGTGTACCGTGTAAACGGGGTTTTGGTTTGCGTTTGC CATACCCGCTCCACAGCCCGGTTAGATGCTTGGCTTCCGACGTAATCGAT TGTTCTCCGTTTATGTTCGGTTGTGTCGGAATATTCATACTGGTACTTGT ATGCGTGTAAACCCCGGACTGCCCGGAGTGTAGGTTCCGAAGTGTTTGTT GATATCGTCTGGCTGTTGTTTCGAGAGGCGTGTATTATTAGCTTTATGTA GTGTTCGGATTGAACACTCATGTATCATACGATAATTTACATGGTTCCCG AACACGGCACTAAATGTGATACTTCGGTTGAAAGCAGAGGCCTCACCATA CCATCTTCCCTCCTCTTGCCGGCAACATACATACCTATACCATGATACGT GACCACGCCGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13188:4750..6661-

>mRNA_S-dermatodea_contig13188.1902.1 ID=mRNA_S-dermatodea_contig13188.1902.1|Name=mRNA_S-dermatodea_contig13188.1902.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at S-dermatodea_contig13188:4750..6661- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCTTCGAGGCAAGTAAACAGCCTGGCGGTCGCCGCCGCCTTCGCCCT
CTTCGCCATGTTTCTCTTCTGCGCACGAGATGAGCACGGCACGTGGCGCA
ACGACTACTCCTGCCTCACAACGTCGAGGGGGAGCCCCGCCACGACCGGC
TCGCAACCCCCGACGCCCGACCCGAAAGAGCTCAAGGACCACGCGACCGG
CCTGACGCTGCCGCGAAAGAAGCGATTCTCGAAGGGGGACCTCGTGTGCC
TCGGGGTAGGCGTGCGCGCCAAATCGATCGCCGTCGTGAAGGTCAACGTC
TACACGGTAGGTCTGTACGTTGACCCCAAGGGGGCGCGAGGACCCCTCAA
GAAGTTCGCCGGGTCGGATCCTGCAGAGTTGAGGCAGGATGTCTCGTTGT
TCAAGGCTTTGGGGCAGGCCGGGTTCACGAAGTACCTCCACCTCGTGTTC
GCGAGGAGTGTGGGAGCGCAGCAGGTGGTGGACGCTCTGACGTCTGTCAA
AGGCGTGAGCGAGGAGGCTTTATCCAGATGCCTTCGAGGCAAGTAAACAG
CCTGGCGGTCGCCGCCGCCTTCGCCCTCTTCGCCATGTTTCTCTTCTGCG
CACGAGATGAGCACGGCACGTGGCGCAACGACTACTCCTGCCTCACAACG
TCGAGGGGGAGCCCCGCCACGACCGGCTCGCAACCCCCGACGCCCGACCC
GAAAGAGCTCAAGGACCACGCGACCGGCCTGACGCTGCCGCGAAAGAAGC
GATTCTCGAAGGGGGACCTCGTGTGCCTCGGGGTAGGCGTGCGCGCCAAA
TCGATCGCCGTCGTGAAGGTCAACGTCTACACGGTAGGTCTGTACGTTGA
CCCCAAGGGGGCGCGAGGACCCCTCAAGAAGTTCGCCGGGTCGGATCCTG
CAGAGTTGAGGCAGGATGTCTCGTTGTTCAAGGCTTTGGGGCAGGCCGGG
TTCACGAAGTACCTCCACCTCGTGTTCGCGAGGAGTGTGGGAGCGCAGCA
GGTGGTGGACGCTCTGACGTCTGTCAAAGGCGTGAGCGAGGAGGCTTTAT
CCAGGTTCTCATCCATCATGCTAGAGGCGGTCGGCAAGAATGTCGGCAAG
GGTGAAACCGTTTCGCTAGGCTGGGAAGGGAAGGACAAACTGGTTATCTT
GGTTCGAGACAAGCCGGCGGGCACCGTGGTGGACGCCGCCCTTCCCAAGG
CCATATTCGATCTGTACTTGGGGTCCAGCCCTGTCTCCCGGGAAGCTAAG
GCCGCCTTCGCGGAAGGGGTGCCCGCGTTGCTTAGCAGTTGAGTTCTCAT
CCATCATGCTAGAGGCGGTCGGCAAGAATGTCGGCAAGGGTGAAACCGTT
TCGCTAGGCTGGGAAGGGAAGGACAAACTGGTTATCTTGGTTCGAGACAA
GCCGGCGGGCACCGTGGTGGACGCCGCCCTTCCCAAGGCCATATTCGATC
TGTACTTGGGGTCCAGCCCTGTCTCCCGGGAAGCTAAGGCCGCCTTCGCG
GAAGGGGTGCCCGCGTTGCTTAGCAGTTGA
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