mRNA_S-dermatodea_contig1313.1878.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1313.1878.1
Unique NamemRNA_S-dermatodea_contig1313.1878.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A6H5KLS4_9PHAE (Cofac_haem_bdg domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLS4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.300e-29
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLVNKV 189
            LDRY++ HGDL  LK DTKWDETWGFDFNQYAKIF YARENGIRLVGLNAP SLL+L+NKV
Sbjct:  177 LDRYVYSHGDLAALKLDTKWDETWGFDFNQYAKIFHYARENGIRLVGLNAPQSLLHLINKV 237          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A836CAW1_9STRA (Cofac_haem_bdg domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.960e-19
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 MPLDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLVNK 186
            + LDRY+F HG L  LK +T WD+ WG+DFN Y KIFR+AR NG+RLVGLNAP  L+ +V+K
Sbjct:  200 LALDRYVFRHGSLGRLKLETGWDDMWGYDFNNYTKIFRFARLNGVRLVGLNAPIQLVSMVSK 261          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A7S0EKS4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EKS4_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.500e-14
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLV 180
            LD ++F  G    LK+ T+W  TWG+DFNQYAKI  YAR + I+LVGLN P  L+  V
Sbjct:   58 LDAFVFQDGSFANLKKRTRWASTWGYDFNQYAKILAYARRHSIQLVGLNVPFGLVNAV 115          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: W7U433_9STRA (Cofac_haem_bdg domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U433_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.640e-14
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLVNKV 189
            LD Y+F  G L +LK+DTKWD+TWG     YAKIF+YA+ +GIRL GLN P  ++ +V ++
Sbjct:  178 LDDYVFGKGTLASLKEDTKWDKTWGHKMASYAKIFQYAKAHGIRLCGLNVPQPVVQVVRQM 238          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A5J4YW85_PORPP (Cofac_haem_bdg domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW85_PORPP)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-12
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLV 180
            LD Y++    L  LK+ TKWDE WG DFN +  IF YAR++GIRLVGLN P+  + +V
Sbjct:  258 LDDYVYGRIGLNKLKERTKWDEMWGHDFNFWLPIFAYARQHGIRLVGLNLPSKAVQIV 315          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A0M2PWR0_PROHO (Cofac_haem_bdg domain-containing protein n=2 Tax=Prochlorothrix hollandica TaxID=1223 RepID=A0A0M2PWR0_PROHO)

HSP 1 Score: 56.6 bits (135), Expect = 9.190e-8
Identity = 22/54 (40.74%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASL 168
            +DRY+    D  +L++DT++DE WGFD+  YA + R+A+  GI+++ LN P  +
Sbjct:   76 IDRYLAGSIDETSLRRDTEYDERWGFDWELYAPLLRFAQAQGIKVLALNTPTEI 129          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A3C1BQH1_9BACT (Iron-regulated protein n=1 Tax=Deferribacteraceae bacterium TaxID=2053543 RepID=A0A3C1BQH1_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 6.200e-7
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPA 162
            LD YI    D RT+ + T++ + W +D++ Y  I  YARENGIR++ LNAPA
Sbjct:   48 LDDYIEGVIDERTMLEKTEYYKRWRYDYHLYKPILTYARENGIRIIALNAPA 99          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A522Z0Y3_9BACT (Cofac_haem_bdg domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A522Z0Y3_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 8.310e-7
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   64 WDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLL 171
            W + WG+DF  YA + RYA+ NG+R+VGLNAP +L+
Sbjct:  114 WKKAWGYDFAMYAPLLRYAKANGLRIVGLNAPRALV 149          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A1G0G5P0_9GAMM (Cofac_haem_bdg domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G5P0_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 1.640e-6
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLVNKV 189
            L R++           ++KW E W  DF+ Y  +  +ARENGI ++GLN P SL++ V K+
Sbjct:  121 LRRWVAGESTEAEFLSESKWKEHWNVDFDYYRPLLLFARENGIPVIGLNVPKSLVHAVAKM 181          
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Match: A0A0G4GP38_9ALVE (Cofac_haem_bdg domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GP38_9ALVE)

HSP 1 Score: 52.8 bits (125), Expect = 2.370e-6
Identity = 26/58 (44.83%), Postives = 31/58 (53.45%), Query Frame = 1
Query:    7 LDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGLNAPASLLYLV 180
            LD Y         + Q+  WD TW +D   Y  IF YA+ NGIRLVGLN P   + LV
Sbjct:  213 LDDYTGSSMPFAQVVQNLDWDNTWRYDPQMYYPIFDYAKNNGIRLVGLNIPEVFVSLV 270          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1313.1878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLS4_9PHAE4.300e-2983.61Cofac_haem_bdg domain-containing protein n=2 Tax=E... [more]
A0A836CAW1_9STRA1.960e-1961.29Cofac_haem_bdg domain-containing protein n=1 Tax=T... [more]
A0A7S0EKS4_9EUKA1.500e-1453.45Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
W7U433_9STRA2.640e-1452.46Cofac_haem_bdg domain-containing protein n=2 Tax=M... [more]
A0A5J4YW85_PORPP1.790e-1253.45Cofac_haem_bdg domain-containing protein n=1 Tax=P... [more]
A0A0M2PWR0_PROHO9.190e-840.74Cofac_haem_bdg domain-containing protein n=2 Tax=P... [more]
A0A3C1BQH1_9BACT6.200e-748.08Iron-regulated protein n=1 Tax=Deferribacteraceae ... [more]
A0A522Z0Y3_9BACT8.310e-755.56Cofac_haem_bdg domain-containing protein n=1 Tax=b... [more]
A0A1G0G5P0_9GAMM1.640e-637.70Cofac_haem_bdg domain-containing protein n=1 Tax=G... [more]
A0A0G4GP38_9ALVE2.370e-644.83Cofac_haem_bdg domain-containing protein n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1313contigS-dermatodea_contig1313:20575..20775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionprotein of unknown function DUF399
Ec32 orthologEc-27_004960.1
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.969843-CDS-S-dermatodea_contig1313:20574..207751622924274.969843-CDS-S-dermatodea_contig1313:20574..20775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 20575..20775 +
1694079143.1375027-CDS-S-dermatodea_contig1313:20574..207751694079143.1375027-CDS-S-dermatodea_contig1313:20574..20775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 20575..20775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1313.1878.1prot_S-dermatodea_contig1313.1878.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1313 20575..20775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1313.1878.1

>prot_S-dermatodea_contig1313.1878.1 ID=prot_S-dermatodea_contig1313.1878.1|Name=mRNA_S-dermatodea_contig1313.1878.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
MPLDRYIFDHGDLRTLKQDTKWDETWGFDFNQYAKIFRYARENGIRLVGL
NAPASLLYLVNKVRDSL
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mRNA from alignment at S-dermatodea_contig1313:20575..20775+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1313.1878.1 ID=mRNA_S-dermatodea_contig1313.1878.1|Name=mRNA_S-dermatodea_contig1313.1878.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig1313:20575..20775+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCTCGACCGGTACATTTTCGACCATGGCGACCTGCGGACCCTCAA GCAGGACACCAAGTGGGACGAGACGTGGGGGTTCGACTTCAACCAGTACG CCAAGATATTCCGCTACGCCCGCGAGAACGGTATCCGGCTGGTGGGACTC AACGCGCCGGCGTCCCTGCTTTACCTCGTTAACAAGGTCAGAGACAGTCT C
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Coding sequence (CDS) from alignment at S-dermatodea_contig1313:20575..20775+

>mRNA_S-dermatodea_contig1313.1878.1 ID=mRNA_S-dermatodea_contig1313.1878.1|Name=mRNA_S-dermatodea_contig1313.1878.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig1313:20575..20775+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGCTCGACCGGTACATTTTCGACCATGGCGACCTGCGGACCCTCAA
GCAGGACACCAAGTGGGACGAGACGTGGGGGTTCGACTTCAACCAGTACG
CCAAGATATTCCGCTACGCCCGCGAGAACGGTATCCGGCTGGTGGGACTC
AACGCGCCGGCGTCCCTGCTTTACCTCGTTAACAAGGTCAGAGACAGTCT
CATGCCGCTCGACCGGTACATTTTCGACCATGGCGACCTGCGGACCCTCA
AGCAGGACACCAAGTGGGACGAGACGTGGGGGTTCGACTTCAACCAGTAC
GCCAAGATATTCCGCTACGCCCGCGAGAACGGTATCCGGCTGGTGGGACT
CAACGCGCCGGCGTCCCTGCTTTACCTCGTTAACAAGGTCAGAGACAGTC
TC
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