mRNA_S-dermatodea_contig13079.1852.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13079.1852.1
Unique NamemRNA_S-dermatodea_contig13079.1852.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13079.1852.1 vs. uniprot
Match: D8LS64_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS64_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 6.760e-24
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    1 VPFTLHLPEDLFYSPKERSRIIVHKPIRPGDPEFKDVTTLRKHCFDTVMALEKQAAXXXXXXXXAGGENAPPEAKKTK 234
            VPFTL LPE+LF+ P++R++I VH+PIRPGDP FKDV TLRKHCFDTVM  +K+AA          G     E+KKTK
Sbjct:  136 VPFTLDLPENLFHGPRQRTKITVHEPIRPGDPAFKDVATLRKHCFDTVMRKQKEAAAAAAMAGEGAGSTPVIESKKTK 213
[Close]
BLAST of mRNA_S-dermatodea_contig13079.1852.1 vs. uniprot
Match: A0A6H5JNW3_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.100e-18
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 VPFTLHLPEDLFYSPKERSRIIVHKPIRPGDPEFKDVTTLRKHCFDTVM 147
            VPFTL LPE+LF+ P++R++I VH+P+RPGDP FKDV TLRKHCFDTVM
Sbjct:  266 VPFTLDLPENLFHGPRQRTKITVHEPVRPGDPAFKDVATLRKHCFDTVM 314
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13079.1852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS64_ECTSI6.760e-2458.971-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6H5JNW3_9PHAE3.100e-1873.47PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13079contigS-dermatodea_contig13079:150..914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog2880.D8LS64
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0019637,GO:0022414,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090407,GO:1901576
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG2848@2759
EC2.3.1.51
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-12_004670.1
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.0588672-CDS-S-dermatodea_contig13079:149..2961622924273.0588672-CDS-S-dermatodea_contig13079:149..296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13079 150..296 +
1694079141.7475798-CDS-S-dermatodea_contig13079:149..2961694079141.7475798-CDS-S-dermatodea_contig13079:149..296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13079 150..296 +
1622924273.0712864-CDS-S-dermatodea_contig13079:824..9141622924273.0712864-CDS-S-dermatodea_contig13079:824..914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13079 825..914 +
1694079141.760082-CDS-S-dermatodea_contig13079:824..9141694079141.760082-CDS-S-dermatodea_contig13079:824..914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13079 825..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13079.1852.1prot_S-dermatodea_contig13079.1852.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13079 150..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13079.1852.1

>prot_S-dermatodea_contig13079.1852.1 ID=prot_S-dermatodea_contig13079.1852.1|Name=mRNA_S-dermatodea_contig13079.1852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
VPFTLHLPEDLFYSPKERSRIIVHKPIRPGDPEFKDVTTLRKHCFDTVMA
LEKQAAAAAAATATAGGENAPPEAKKTK*
back to top

mRNA from alignment at S-dermatodea_contig13079:150..914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13079.1852.1 ID=mRNA_S-dermatodea_contig13079.1852.1|Name=mRNA_S-dermatodea_contig13079.1852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=765bp|location=Sequence derived from alignment at S-dermatodea_contig13079:150..914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCCGTTCACACTCCACCTGCCGGAGGACTTGTTTTACAGCCCCAAGGA
GCGGTCGAGGATCATCGTGCACAAGCCTATCCGGCCGGGAGATCCCGAGT
TCAAGGACGTGACGACGTTGCGCAAGCACTGCTTCGACACGGTGATGGTG
AGCGATTAGGCGATTTCCGCTCGAGCGGTGTGTTGCGGGTGTGTTCGCGT
TTTGAGCGCTTGTGTACAAGTACACTATACTTGCAGCAGTTTAATTTGTG
ATTGATTAATTTGCACACGTAGAGCCGATCGGCTTTATCTGACCTATCCG
ACTTTGTGGTCAGATACGCAAAGAGTCAAGGAGAACAATAACTGATCATA
ACTCTACTTCTGCTACACACCGTACCGTCCCTGGTACTTGCTATAGGTAC
AAGAAAGACACAATGTTGTATATATCAAATAGTGCGGGGAACAAACAAGG
GCGGCGGGTACGGATGTATGATACGCGGGTAAAATCCTCGCATTTGTTTT
AGCATATGCGACATTCCCGCAGGCCTCCTGCCGTTTGTCCGACTCCCCTC
CTTGCTGCCTCATTCTCTTTCTTTTCGGATGTGTGTGTGTGCGTGTGTGC
GTGCGTGTGTGTATTATGCAATGCTGTTTAATACAGGGGTCGCTTCCTTA
CGCGAAGGGGATGCTCGAGAAGCAGGCATTAGAGAAACAAGCCGCGGCGG
CGGCGGCAGCAACAGCAACAGCTGGAGGGGAAAACGCGCCACCAGAGGCC
AAGAAGACGAAGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13079:150..914+

>mRNA_S-dermatodea_contig13079.1852.1 ID=mRNA_S-dermatodea_contig13079.1852.1|Name=mRNA_S-dermatodea_contig13079.1852.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig13079:150..914+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCCGTTCACACTCCACCTGCCGGAGGACTTGTTTTACAGCCCCAAGGA
GCGGTCGAGGATCATCGTGCACAAGCCTATCCGGCCGGGAGATCCCGAGT
TCAAGGACGTGACGACGTTGCGCAAGCACTGCTTCGACACGGTGATGGTG
CCGTTCACACTCCACCTGCCGGAGGACTTGTTTTACAGCCCCAAGGAGCG
GTCGAGGATCATCGTGCACAAGCCTATCCGGCCGGGAGATCCCGAGTTCA
AGGACGTGACGACGTTGCGCAAGCACTGCTTCGACACGGTGATGGCATTA
GAGAAACAAGCCGCGGCGGCGGCGGCAGCAACAGCAACAGCTGGAGGGGA
AAACGCGCCACCAGAGGCCAAGAAGACGAAGTGAGCATTAGAGAAACAAG
CCGCGGCGGCGGCGGCAGCAACAGCAACAGCTGGAGGGGAAAACGCGCCA
CCAGAGGCCAAGAAGACGAAGTGA
back to top