mRNA_S-dermatodea_contig13044.1837.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13044.1837.1
Unique NamemRNA_S-dermatodea_contig13044.1837.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.780e-20
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDG  AW+ LE+ +D  +   R+    +L  T MK G+DP DFL  MD  R RL DMGE I  E + D+LL AL+ +Y F+R TS +DR FGL +I++ M +M
Sbjct:   58 GDGAGAWKTLEDSFDGSTKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNM 160
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BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.210e-14
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  106 MKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            M QG+DPD F   ++  R R  DM E I+ ERF D++L A++ DYD+VR TSFR R FGLE+IK+ M+SM
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSM 70
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.550e-11
Identity = 35/103 (33.98%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++        +L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY F++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFTELKANYNRVTDEVISAKLNDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNI 213
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.050e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNI 213
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5KE37_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE37_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.410e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  134 GDGQAAFAQLKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFNVQQMQAVMRNI 236
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.870e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNI 213
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.890e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNI 213
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNI 213
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5JC59_9PHAE (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC59_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNI 213
[Close]
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.940e-10
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    7 GDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMDTARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKSAMRSM 315
            GDGQAA+  L+  Y+ V++   +   ++L +T M+ G++PDDF       R +L  MGE I+  RF D+ +   + DY  ++   FRD  F ++ +++ MR++
Sbjct:  111 GDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNI 213
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13044.1837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE7.780e-2046.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE2.210e-1454.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMR7_9PHAE2.550e-1133.98CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXA1_9PHAE1.050e-1033.01CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KE37_9PHAE1.410e-1033.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KN28_9PHAE1.870e-1033.01Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KJB9_9PHAE1.890e-1033.01Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5K4S9_9PHAE1.920e-1033.01CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JC59_9PHAE1.920e-1033.01gag_pre-integrs domain-containing protein (Fragmen... [more]
A0A6H5K3T5_9PHAE1.940e-1033.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13044contigS-dermatodea_contig13044:257..574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.980164-CDS-S-dermatodea_contig13044:256..5741622924271.980164-CDS-S-dermatodea_contig13044:256..574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13044 257..574 -
1694079140.9458258-CDS-S-dermatodea_contig13044:256..5741694079140.9458258-CDS-S-dermatodea_contig13044:256..574Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13044 257..574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13044.1837.1prot_S-dermatodea_contig13044.1837.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13044 257..574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13044.1837.1

>prot_S-dermatodea_contig13044.1837.1 ID=prot_S-dermatodea_contig13044.1837.1|Name=mRNA_S-dermatodea_contig13044.1837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
GLGDGQAAWQVLEEKYDAVSNATRQELYEELAKTKMKQGQDPDDFLYIMD
TARDRLHDMGEHITSERFGDLLLNALTPDYDFVRNTSFRDRQFGLEDIKS
AMRSM*
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mRNA from alignment at S-dermatodea_contig13044:257..574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13044.1837.1 ID=mRNA_S-dermatodea_contig13044.1837.1|Name=mRNA_S-dermatodea_contig13044.1837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig13044:257..574- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACTCGGAGACGGGCAAGCTGCGTGGCAAGTACTCGAGGAGAAGTACGA
CGCTGTCAGCAACGCCACTCGCCAGGAGCTCTATGAAGAATTGGCGAAGA
CCAAGATGAAGCAGGGCCAGGATCCCGACGACTTCCTGTACATCATGGAT
ACAGCGCGAGACCGTCTTCACGATATGGGGGAGCACATCACCTCCGAGCG
GTTCGGCGACCTTCTACTCAACGCCCTCACGCCAGACTACGACTTCGTGC
GCAACACCAGCTTCAGGGACCGCCAGTTCGGACTGGAGGACATCAAATCC
GCGATGCGTAGTATGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13044:257..574-

>mRNA_S-dermatodea_contig13044.1837.1 ID=mRNA_S-dermatodea_contig13044.1837.1|Name=mRNA_S-dermatodea_contig13044.1837.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig13044:257..574- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACTCGGAGACGGGCAAGCTGCGTGGCAAGTACTCGAGGAGAAGTACGA
CGCTGTCAGCAACGCCACTCGCCAGGAGCTCTATGAAGAATTGGCGAAGA
CCAAGATGAAGCAGGGCCAGGATCCCGACGACTTCCTGTACATCATGGAT
ACAGCGCGAGACCGTCTTCACGATATGGGGGAGCACATCACCTCCGAGCG
GTTCGGCGACCTTCTACTCAACGCCCTCACGCCAGACTACGACTTCGTGC
GCAACACCAGCTTCAGGGACCGCCAGTTCGGACTGGAGGACATCAAATCC
GCGATGCGTAGTATGTAGGGACTCGGAGACGGGCAAGCTGCGTGGCAAGT
ACTCGAGGAGAAGTACGACGCTGTCAGCAACGCCACTCGCCAGGAGCTCT
ATGAAGAATTGGCGAAGACCAAGATGAAGCAGGGCCAGGATCCCGACGAC
TTCCTGTACATCATGGATACAGCGCGAGACCGTCTTCACGATATGGGGGA
GCACATCACCTCCGAGCGGTTCGGCGACCTTCTACTCAACGCCCTCACGC
CAGACTACGACTTCGTGCGCAACACCAGCTTCAGGGACCGCCAGTTCGGA
CTGGAGGACATCAAATCCGCGATGCGTAGTATGTAG
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