mRNA_S-dermatodea_contig13003.1823.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13003.1823.1
Unique NamemRNA_S-dermatodea_contig13003.1823.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A6H5JSC8_9PHAE (Alpha,alpha-trehalase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 7.530e-43
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            R WA +IHGLWPLLVR    DVAV+P R+SLLPR+HPVV+PGGRFRESYYWDTFWT+RGL+VSGMVDTARG VLNLLDDVDRFG
Sbjct:  168 REWARAIHGLWPLLVRANAADVAVNPQRHSLLPRQHPVVVPGGRFRESYYWDTFWTIRGLVVSGMVDTARGAVLNLLDDVDRFG 251          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A7S1CDW3_9STRA (Alpha,alpha-trehalase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDW3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.240e-34
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            R WA +++ LW  L R+V  +V  HP R++L+  RHPVV+PGGRFRE+YYWDT+W VRGLL  GMVDTARG+V NLLD+VD FG
Sbjct:  144 REWASAVNALWKELGRQVAPEVVAHPQRHTLIALRHPVVVPGGRFRETYYWDTYWIVRGLLTCGMVDTARGLVQNLLDEVDAFG 227          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A7S2WW33_9STRA (Trehalase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW33_9STRA)

HSP 1 Score: 129 bits (323), Expect = 5.380e-33
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            R++  S+HG+WP LVR+  D V  HP R+SLL R H VV+PGGRFRESYYWD++W VRGLL+SGM  TA+GVVLNLLDDV RFG
Sbjct:  138 RSFFRSLHGIWPSLVRRTSDAVHQHPQRHSLLWREHSVVVPGGRFRESYYWDSYWIVRGLLLSGMHSTAQGVVLNLLDDVKRFG 221          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A7R8WRI6_9CRUS (Trehalase n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WRI6_9CRUS)

HSP 1 Score: 121 bits (303), Expect = 1.220e-32
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            R WA  +H LW  L +KVVDDV  +PS+YS+L   HP ++PGGRFRE YYWD++WT+RGLLVSGM DT +G++LN L  V+RFG
Sbjct:   95 REWASELHQLWKKLGKKVVDDVRDNPSQYSILYVPHPTIVPGGRFREFYYWDSYWTIRGLLVSGMTDTVKGMLLNFLALVERFG 178          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A835ZF27_9STRA (Trehalase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF27_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.320e-30
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    7 WALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            WA ++H LWP L R+V  DV  +P R+SLL R + VV+PGGRFRESYYWD++W  +GLLVSGM  TA+GVV NLLDDV  FG
Sbjct:  104 WAAALHALWPGLTRQVSPDVKANPQRHSLLHRANAVVVPGGRFRESYYWDSYWICKGLLVSGMAQTAQGVVQNLLDDVKTFG 185          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: W7TGI9_9STRA (Trehalase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGI9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.530e-30
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    7 WALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            WA  ++  W  L RKV DDV ++P RYS+L R HPVVIPGGRFRESYYWD++W V GLL   M DTARG+V NLLDDV  FG
Sbjct:   70 WAAELNHFWKQLCRKVSDDVFLNPQRYSILRRTHPVVIPGGRFRESYYWDSYWIVLGLLACDMKDTARGLVQNLLDDVANFG 151          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A4D9CWV3_9STRA (Trehalase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.010e-29
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    7 WALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            WA  ++  W  L RKV DDV ++P RYS+L R HPVVIPGGRFRESYYWD++W V GLL   M DTARG+V NLLDDV  FG
Sbjct:  262 WAAELNHFWKQLCRKVSDDVFLNPQRYSILRRTHPVVIPGGRFRESYYWDSYWIVLGLLACDMKDTARGLVQNLLDDVANFG 343          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A5J9V8N4_9POAL (Trehalase n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V8N4_9POAL)

HSP 1 Score: 119 bits (299), Expect = 1.140e-29
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            RAWAL +H LW LL R+V  DVA HP R++LLP    VVIPG RFRE YYWDT+W +RGLLVS M DTA+ V LNL+  V+++G
Sbjct:  171 RAWALEVHALWKLLARRVAPDVAAHPERHTLLPLPGAVVIPGARFREVYYWDTYWVIRGLLVSKMYDTAKEVTLNLVYLVEKYG 254          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: A0A103XR14_CYNCS (Trehalase n=3 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103XR14_CYNCS)

HSP 1 Score: 117 bits (293), Expect = 5.730e-29
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            R WAL +H LW  L RKV + V  HP  ++LLP +HPV+IPG RF E YYWD++W +RGLL S M +TA+G+V+NL+D VD +G
Sbjct:  153 RDWALEVHSLWKTLSRKVSNQVLEHPELHTLLPLKHPVIIPGSRFEEVYYWDSYWVIRGLLASKMYETAKGIVINLIDLVDTYG 236          
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Match: W7TPJ2_9STRA (Trehalase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPJ2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.460e-29
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    4 AWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYYWDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG 252
            AWA +++  +  L RKV DDV ++P RYS+L R HPVVIPGGRFRESYYWD++W V GLL   M DTARG+V NLLDDV  FG
Sbjct:  214 AWAQTLNQAFASLTRKVSDDVFLNPQRYSILRRTHPVVIPGGRFRESYYWDSYWIVLGLLACDMKDTARGLVQNLLDDVANFG 296          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13003.1823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSC8_9PHAE7.530e-4382.14Alpha,alpha-trehalase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S1CDW3_9STRA1.240e-3463.10Alpha,alpha-trehalase (Fragment) n=1 Tax=Bicosoeci... [more]
A0A7S2WW33_9STRA5.380e-3367.86Trehalase n=1 Tax=Rhizochromulina marina TaxID=103... [more]
A0A7R8WRI6_9CRUS1.220e-3260.71Trehalase n=1 Tax=Cyprideis torosa TaxID=163714 Re... [more]
A0A835ZF27_9STRA5.320e-3063.41Trehalase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
W7TGI9_9STRA7.530e-3064.63Trehalase n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A4D9CWV3_9STRA1.010e-2964.63Trehalase n=1 Tax=Nannochloropsis salina CCMP1776 ... [more]
A0A5J9V8N4_9POAL1.140e-2961.90Trehalase n=1 Tax=Eragrostis curvula TaxID=38414 R... [more]
A0A103XR14_CYNCS5.730e-2955.95Trehalase n=3 Tax=Cynara cardunculus var. scolymus... [more]
W7TPJ2_9STRA6.460e-2963.86Trehalase n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13003contigS-dermatodea_contig13003:1665..2253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.2
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog3218.PP1S194_104V6.3
KEGG rclassRC00049
KEGG koko:K01194
KEGG ReactionR00010
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004555,GO:0005575,GO:0005623,GO:0005886,GO:0005975,GO:0005984,GO:0005991,GO:0005993,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0015927,GO:0016020,GO:0016052,GO:0016787,GO:0016798,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044275,GO:0044464,GO:0046352,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.Alpha-trehalose glucohydrolase
EggNOG OGs37J87@33090,3G9GD@35493,COG1626@1,KOG0602@2759
EC3.2.1.28
COG Functional cat.G
CAZyGH37
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrehalase N-terminal fragment, family GH37
Ec32 orthologEc-22_000080.1
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.0137937-CDS-S-dermatodea_contig13003:1664..17461622924271.0137937-CDS-S-dermatodea_contig13003:1664..1746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13003 1665..1746 -
1694079140.3173556-CDS-S-dermatodea_contig13003:1664..17461694079140.3173556-CDS-S-dermatodea_contig13003:1664..1746Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13003 1665..1746 -
1622924271.0270598-CDS-S-dermatodea_contig13003:2080..22531622924271.0270598-CDS-S-dermatodea_contig13003:2080..2253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13003 2081..2253 -
1694079140.3300366-CDS-S-dermatodea_contig13003:2080..22531694079140.3300366-CDS-S-dermatodea_contig13003:2080..2253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13003 2081..2253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13003.1823.1prot_S-dermatodea_contig13003.1823.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13003 1665..2253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13003.1823.1

>prot_S-dermatodea_contig13003.1823.1 ID=prot_S-dermatodea_contig13003.1823.1|Name=mRNA_S-dermatodea_contig13003.1823.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
RAWALSIHGLWPLLVRKVVDDVAVHPSRYSLLPRRHPVVIPGGRFRESYY
WDTFWTVRGLLVSGMVDTARGVVLNLLDDVDRFG*
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mRNA from alignment at S-dermatodea_contig13003:1665..2253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13003.1823.1 ID=mRNA_S-dermatodea_contig13003.1823.1|Name=mRNA_S-dermatodea_contig13003.1823.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=589bp|location=Sequence derived from alignment at S-dermatodea_contig13003:1665..2253- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCGTGGGCGCTATCCATTCACGGGCTGTGGCCGCTTCTGGTGAGAAA GGTCGTCGACGATGTGGCGGTGCATCCCAGCCGGTACTCGCTTTTGCCCC GGAGGCACCCCGTCGTGATCCCCGGTGGGCGCTTCCGCGAGTCGTACTAC TGGGACACCTTCTGGACGGTCAGGTATACGAGAACGCACGCACTGCTGTG CTGCTCTTTTAGTTGTTGCGGGTTTCGTCAGAGCTTTTATGCGTTTTAGG TGGGGGGCGGGGGGGGGGGGGGGTCACACATAACGTAGACCTCCACTAAG TTAGCTTGGGCCATCTTTTCAGAATTTTGGTCCTGATAACTGGGTACCTC CGTCGTATTTATCGCTGTTTCTCCCAACTATACCGTTTGTGCACCCTTCG AAATATTTCGTTTAACTAATGTCAAGGAATTTTTTTTATTCCTTCGTTGC CTTTAACCTCCCACCTATCGATCCGCTGAACGCCCCCCTGCCCCGTCGGC ACGGAAGGGGCCTGCTCGTGTCGGGCATGGTGGATACGGCGAGGGGGGTC GTGTTGAATCTGCTGGACGACGTCGACCGTTTCGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13003:1665..2253-

>mRNA_S-dermatodea_contig13003.1823.1 ID=mRNA_S-dermatodea_contig13003.1823.1|Name=mRNA_S-dermatodea_contig13003.1823.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig13003:1665..2253- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCGTGGGCGCTATCCATTCACGGGCTGTGGCCGCTTCTGGTGAGAAA
GGTCGTCGACGATGTGGCGGTGCATCCCAGCCGGTACTCGCTTTTGCCCC
GGAGGCACCCCGTCGTGATCCCCGGTGGGCGCTTCCGCGAGTCGTACTAC
TGGGACACCTTCTGGACGGTCAGAGGGCGTGGGCGCTATCCATTCACGGG
CTGTGGCCGCTTCTGGTGAGAAAGGTCGTCGACGATGTGGCGGTGCATCC
CAGCCGGTACTCGCTTTTGCCCCGGAGGCACCCCGTCGTGATCCCCGGTG
GGCGCTTCCGCGAGTCGTACTACTGGGACACCTTCTGGACGGTCAGGGGC
CTGCTCGTGTCGGGCATGGTGGATACGGCGAGGGGGGTCGTGTTGAATCT
GCTGGACGACGTCGACCGTTTCGGGTGAGGGCCTGCTCGTGTCGGGCATG
GTGGATACGGCGAGGGGGGTCGTGTTGAATCTGCTGGACGACGTCGACCG
TTTCGGGTGA
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