mRNA_S-dermatodea_contig13002.1822.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13002.1822.1
Unique NamemRNA_S-dermatodea_contig13002.1822.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13002.1822.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.000e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   76 DIVMYLADFVDPKGYIFFAPVAKCWRKAWAERPTITAGITAHTTLSQLSFSFQGGRLPPSHRLCEAAASLGKLDLLRCARDFGCGWS 336
            DIV  + +FVD   Y+FFA V++ WR  W +RPT+T  +TA T++SQLS SF+ G L  +  +CE  A LG+LDLLR AR  GC W+
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECG-LRRTAAVCETVAGLGRLDLLRRARAMGCPWN 95
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13002.1822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMS7_ECTSI1.000e-1650.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13002contigS-dermatodea_contig13002:3743..4901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein similar to EsV-1-2
Ec32 orthologEc-10_000850.1
Exons1
Model size1161
Cds size1158
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.976872-CDS-S-dermatodea_contig13002:3742..49001622924270.976872-CDS-S-dermatodea_contig13002:3742..4900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13002 3743..4900 +
1694079140.3026032-CDS-S-dermatodea_contig13002:3742..49001694079140.3026032-CDS-S-dermatodea_contig13002:3742..4900Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13002 3743..4900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13002.1822.1prot_S-dermatodea_contig13002.1822.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13002 3743..4900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13002.1822.1

>prot_S-dermatodea_contig13002.1822.1 ID=prot_S-dermatodea_contig13002.1822.1|Name=mRNA_S-dermatodea_contig13002.1822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=386bp
RHTEQANSCYKFLMIAMASPIEEEEDIVMYLADFVDPKGYIFFAPVAKCW
RKAWAERPTITAGITAHTTLSQLSFSFQGGRLPPSHRLCEAAASLGKLDL
LRCARDFGCGWSLSVCSKAARRGHLEVLQWAHDNGCPWRQDTCASAARGG
YLAVLQWARTNGCPWDVGACIAAADGGHIEVVRWSVAHGCCLDELACASA
AKGGHQSILEELRAAGCPWNQLTCSWAAAGGHLDILRWARANDCEWNGCT
CNEAAASGRLDILRWARAEGCPWNTLTTMCAAEGGHLHILQWARARNCPW
DEKTCARAAFYGHLDVLQWARANGCPWNRETCAEAAVSGRLDVLQWARGN
GCPWDTTTCRAAAENGHLGVLQWARANGCPWDVETC
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mRNA from alignment at S-dermatodea_contig13002:3743..4901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13002.1822.1 ID=mRNA_S-dermatodea_contig13002.1822.1|Name=mRNA_S-dermatodea_contig13002.1822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1159bp|location=Sequence derived from alignment at S-dermatodea_contig13002:3743..4901+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCATACAGAACAGGCGAATAGCTGTTATAAATTTCTTATGATAGCTAT
GGCGAGCCCTATCGAGGAGGAAGAGGACATTGTCATGTATCTGGCAGATT
TTGTGGACCCAAAAGGGTACATCTTTTTCGCGCCAGTGGCCAAGTGCTGG
AGGAAGGCGTGGGCGGAGCGCCCGACGATCACGGCGGGCATCACTGCTCA
CACGACGCTGTCACAGCTGTCCTTTAGCTTTCAGGGCGGGAGGCTGCCGC
CGAGCCATCGTTTGTGCGAAGCCGCGGCGAGCCTCGGCAAACTAGATCTC
CTTCGATGCGCTCGAGATTTTGGTTGTGGATGGTCCCTTTCCGTCTGCAG
CAAAGCTGCTAGGAGAGGGCACCTGGAAGTTCTGCAGTGGGCGCACGACA
ACGGTTGTCCGTGGCGCCAGGACACGTGCGCTAGTGCGGCTAGGGGGGGA
TACCTCGCTGTTCTGCAGTGGGCCCGGACAAACGGCTGCCCCTGGGACGT
TGGAGCATGCATCGCGGCTGCGGATGGCGGGCACATCGAAGTTGTTCGGT
GGTCCGTCGCTCACGGCTGCTGCTTAGACGAGTTAGCGTGCGCCTCTGCT
GCCAAGGGGGGGCATCAAAGCATCCTCGAGGAGCTGCGAGCGGCCGGCTG
CCCCTGGAACCAGTTGACGTGCTCCTGGGCGGCCGCAGGGGGACACCTCG
ACATTCTTCGGTGGGCTCGCGCGAACGACTGCGAGTGGAACGGTTGTACG
TGTAATGAGGCTGCCGCGTCGGGAAGACTCGACATTCTGCGCTGGGCACG
AGCCGAAGGATGCCCGTGGAACACGCTGACGACCATGTGCGCCGCCGAGG
GGGGGCATTTGCACATTCTGCAGTGGGCACGGGCAAGAAATTGTCCGTGG
GACGAGAAGACCTGCGCAAGGGCCGCGTTCTATGGGCACCTCGATGTTTT
GCAATGGGCGCGGGCCAACGGCTGCCCGTGGAACCGAGAGACGTGCGCCG
AGGCCGCCGTATCAGGTCGCCTCGATGTTCTGCAGTGGGCGCGGGGAAAC
GGATGCCCCTGGGACACGACTACATGCCGTGCCGCCGCGGAAAACGGACA
CCTCGGTGTTTTGCAGTGGGCGCGGGCTAACGGCTGCCCCTGGGACGTCG
AGACGTGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13002:3743..4901+

>mRNA_S-dermatodea_contig13002.1822.1 ID=mRNA_S-dermatodea_contig13002.1822.1|Name=mRNA_S-dermatodea_contig13002.1822.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2316bp|location=Sequence derived from alignment at S-dermatodea_contig13002:3743..4901+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCATACAGAACAGGCGAATAGCTGTTATAAATTTCTTATGATAGCTAT
GGCGAGCCCTATCGAGGAGGAAGAGGACATTGTCATGTATCTGGCAGATT
TTGTGGACCCAAAAGGGTACATCTTTTTCGCGCCAGTGGCCAAGTGCTGG
AGGAAGGCGTGGGCGGAGCGCCCGACGATCACGGCGGGCATCACTGCTCA
CACGACGCTGTCACAGCTGTCCTTTAGCTTTCAGGGCGGGAGGCTGCCGC
CGAGCCATCGTTTGTGCGAAGCCGCGGCGAGCCTCGGCAAACTAGATCTC
CTTCGATGCGCTCGAGATTTTGGTTGTGGATGGTCCCTTTCCGTCTGCAG
CAAAGCTGCTAGGAGAGGGCACCTGGAAGTTCTGCAGTGGGCGCACGACA
ACGGTTGTCCGTGGCGCCAGGACACGTGCGCTAGTGCGGCTAGGGGGGGA
TACCTCGCTGTTCTGCAGTGGGCCCGGACAAACGGCTGCCCCTGGGACGT
TGGAGCATGCATCGCGGCTGCGGATGGCGGGCACATCGAAGTTGTTCGGT
GGTCCGTCGCTCACGGCTGCTGCTTAGACGAGTTAGCGTGCGCCTCTGCT
GCCAAGGGGGGGCATCAAAGCATCCTCGAGGAGCTGCGAGCGGCCGGCTG
CCCCTGGAACCAGTTGACGTGCTCCTGGGCGGCCGCAGGGGGACACCTCG
ACATTCTTCGGTGGGCTCGCGCGAACGACTGCGAGTGGAACGGTTGTACG
TGTAATGAGGCTGCCGCGTCGGGAAGACTCGACATTCTGCGCTGGGCACG
AGCCGAAGGATGCCCGTGGAACACGCTGACGACCATGTGCGCCGCCGAGG
GGGGGCATTTGCACATTCTGCAGTGGGCACGGGCAAGAAATTGTCCGTGG
GACGAGAAGACCTGCGCAAGGGCCGCGTTCTATGGGCACCTCGATGTTTT
GCAATGGGCGCGGGCCAACGGCTGCCCGTGGAACCGAGAGACGTGCGCCG
AGGCCGCCGTATCAGGTCGCCTCGATGTTCTGCAGTGGGCGCGGGGAAAC
GGATGCCCCTGGGACACGACTACATGCCGTGCCGCCGCGGAAAACGGACA
CCTCGGTGTTTTGCAGTGGGCGCGGGCTAACGGCTGCCCCTGGGACGTCG
AGACGTGCAGGCATACAGAACAGGCGAATAGCTGTTATAAATTTCTTATG
ATAGCTATGGCGAGCCCTATCGAGGAGGAAGAGGACATTGTCATGTATCT
GGCAGATTTTGTGGACCCAAAAGGGTACATCTTTTTCGCGCCAGTGGCCA
AGTGCTGGAGGAAGGCGTGGGCGGAGCGCCCGACGATCACGGCGGGCATC
ACTGCTCACACGACGCTGTCACAGCTGTCCTTTAGCTTTCAGGGCGGGAG
GCTGCCGCCGAGCCATCGTTTGTGCGAAGCCGCGGCGAGCCTCGGCAAAC
TAGATCTCCTTCGATGCGCTCGAGATTTTGGTTGTGGATGGTCCCTTTCC
GTCTGCAGCAAAGCTGCTAGGAGAGGGCACCTGGAAGTTCTGCAGTGGGC
GCACGACAACGGTTGTCCGTGGCGCCAGGACACGTGCGCTAGTGCGGCTA
GGGGGGGATACCTCGCTGTTCTGCAGTGGGCCCGGACAAACGGCTGCCCC
TGGGACGTTGGAGCATGCATCGCGGCTGCGGATGGCGGGCACATCGAAGT
TGTTCGGTGGTCCGTCGCTCACGGCTGCTGCTTAGACGAGTTAGCGTGCG
CCTCTGCTGCCAAGGGGGGGCATCAAAGCATCCTCGAGGAGCTGCGAGCG
GCCGGCTGCCCCTGGAACCAGTTGACGTGCTCCTGGGCGGCCGCAGGGGG
ACACCTCGACATTCTTCGGTGGGCTCGCGCGAACGACTGCGAGTGGAACG
GTTGTACGTGTAATGAGGCTGCCGCGTCGGGAAGACTCGACATTCTGCGC
TGGGCACGAGCCGAAGGATGCCCGTGGAACACGCTGACGACCATGTGCGC
CGCCGAGGGGGGGCATTTGCACATTCTGCAGTGGGCACGGGCAAGAAATT
GTCCGTGGGACGAGAAGACCTGCGCAAGGGCCGCGTTCTATGGGCACCTC
GATGTTTTGCAATGGGCGCGGGCCAACGGCTGCCCGTGGAACCGAGAGAC
GTGCGCCGAGGCCGCCGTATCAGGTCGCCTCGATGTTCTGCAGTGGGCGC
GGGGAAACGGATGCCCCTGGGACACGACTACATGCCGTGCCGCCGCGGAA
AACGGACACCTCGGTGTTTTGCAGTGGGCGCGGGCTAACGGCTGCCCCTG
GGACGTCGAGACGTGC
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