mRNA_S-dermatodea_contig130.1821.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig130.1821.1
Unique NamemRNA_S-dermatodea_contig130.1821.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig130.1821.1 vs. uniprot
Match: D8LEM3_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.100e-33
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 QGSNQVITLLGCGSGGLPELCSALNETLVAFCALRVAVAGQKAPRFHRIKFVGDEVGGMKKGRAALQKNAVFAVFEGASAGDHDFGSVDEL 273
            +GSN VI LLG G GG+ ELCS L +++VAFC +RV    + + RFHRI FVG+EVGGMKKGRAAL KNAVFAVFEGAS GDHDF SV++L
Sbjct:   49 EGSNSVIKLLGSGIGGVSELCSTLLDSMVAFCGVRVG-DDKGSARFHRILFVGEEVGGMKKGRAALAKNAVFAVFEGASGGDHDFSSVEDL 138
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BLAST of mRNA_S-dermatodea_contig130.1821.1 vs. uniprot
Match: A0A7S2V4Y3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4Y3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.670e-7
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 QGSNQVITLLGCGSGGLPELCSALNETLVAFCALRVAVAGQKAPRFHRIKFVGDEVGGMKKGRAALQKNAVFAVFEGASA 240
            +G ++ + +   G+ G   + ++ +E  VAFC     V G K  +  R+ F+G+ VGGMK+G+A + KNAVF    G SA
Sbjct:   55 EGGSKKVVVKEIGNTGYDGMVASFSEDDVAFCGFSANVDGNK--KLFRVFFIGENVGGMKRGKAGMHKNAVFDKMPGCSA 132
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig130.1821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM3_ECTSI3.100e-3368.13ADF-H domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2V4Y3_9STRA1.670e-736.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig130contigS-dermatodea_contig130:121..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D8LEM3
EggNOG OGs2E604@1,2SCRT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-23_002470.1
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.9464219-CDS-S-dermatodea_contig130:120..4171622924270.9464219-CDS-S-dermatodea_contig130:120..417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig130 121..417 +
1694079140.29071-CDS-S-dermatodea_contig130:120..4171694079140.29071-CDS-S-dermatodea_contig130:120..417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig130 121..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig130.1821.1prot_S-dermatodea_contig130.1821.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig130 121..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig130.1821.1

>prot_S-dermatodea_contig130.1821.1 ID=prot_S-dermatodea_contig130.1821.1|Name=mRNA_S-dermatodea_contig130.1821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
QGSNQVITLLGCGSGGLPELCSALNETLVAFCALRVAVAGQKAPRFHRIK
FVGDEVGGMKKGRAALQKNAVFAVFEGASAGDHDFGSVDELASAAALS*
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mRNA from alignment at S-dermatodea_contig130:121..417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig130.1821.1 ID=mRNA_S-dermatodea_contig130.1821.1|Name=mRNA_S-dermatodea_contig130.1821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at S-dermatodea_contig130:121..417+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGATCGAACCAGGTGATCACCCTGCTCGGCTGCGGTTCGGGAGGCCT
CCCCGAGCTCTGCTCCGCTCTGAACGAGACCTTGGTGGCATTCTGCGCCC
TGCGGGTTGCGGTCGCAGGTCAGAAAGCCCCGCGGTTTCACAGAATAAAG
TTCGTTGGGGACGAGGTCGGTGGCATGAAGAAAGGCCGGGCGGCTCTGCA
GAAGAACGCCGTTTTCGCGGTGTTTGAGGGCGCCTCCGCGGGTGATCACG
ATTTCGGCTCTGTCGACGAGCTCGCGTCGGCGGCGGCGTTGAGCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig130:121..417+

>mRNA_S-dermatodea_contig130.1821.1 ID=mRNA_S-dermatodea_contig130.1821.1|Name=mRNA_S-dermatodea_contig130.1821.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig130:121..417+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGATCGAACCAGGTGATCACCCTGCTCGGCTGCGGTTCGGGAGGCCT
CCCCGAGCTCTGCTCCGCTCTGAACGAGACCTTGGTGGCATTCTGCGCCC
TGCGGGTTGCGGTCGCAGGTCAGAAAGCCCCGCGGTTTCACAGAATAAAG
TTCGTTGGGGACGAGGTCGGTGGCATGAAGAAAGGCCGGGCGGCTCTGCA
GAAGAACGCCGTTTTCGCGGTGTTTGAGGGCGCCTCCGCGGGTGATCACG
ATTTCGGCTCTGTCGACGAGCTCGCGTCGGCGGCGGCGTTGAGCTGACAG
GGATCGAACCAGGTGATCACCCTGCTCGGCTGCGGTTCGGGAGGCCTCCC
CGAGCTCTGCTCCGCTCTGAACGAGACCTTGGTGGCATTCTGCGCCCTGC
GGGTTGCGGTCGCAGGTCAGAAAGCCCCGCGGTTTCACAGAATAAAGTTC
GTTGGGGACGAGGTCGGTGGCATGAAGAAAGGCCGGGCGGCTCTGCAGAA
GAACGCCGTTTTCGCGGTGTTTGAGGGCGCCTCCGCGGGTGATCACGATT
TCGGCTCTGTCGACGAGCTCGCGTCGGCGGCGGCGTTGAGCTGA
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