mRNA_S-dermatodea_contig12983.1811.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12983.1811.1
Unique NamemRNA_S-dermatodea_contig12983.1811.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: D8LCB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCB5_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 6.260e-54
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 3
Query:    3 VGEKMGDAGDCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPKW 308
            VG   G+  DCR+LA++L  +GIVLV DPRVSEVDN+ FLDQME YYAQSDGVKDARPEFSYQVGVTPEGTERPR HCER+SQLPDGHRPLTLCPPEADPKW
Sbjct:   15 VGGAQGNGDDCRKLAEALHAFGIVLVRDPRVSEVDNNQFLDQMEKYYAQSDGVKDARPEFSYQVGVTPEGTERPRAHCERISQLPDGHRPLTLCPPEADPKW 116          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A835ZA03_9STRA (2OG-FeII_Oxy domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA03_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.250e-34
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 3
Query:   36 RRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPKW 308
            R+ ADSL RYG+VLV DP V E DN  F+D ME YY QSDGV DARPE SYQVGVTP G E PR+HC+ V+ +P   RP T+CPPEADPKW
Sbjct:    5 RQAADSLHRYGVVLVRDPDVREEDNAAFIDMMERYYEQSDGVTDARPELSYQVGVTPGGVEVPRDHCDAVTAMPASARPATVCPPEADPKW 95          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A7S1XUY1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.400e-30
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 3
Query:   24 AGDCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPKW 308
            A +C ++A++L +YG +++ DPRV   DND FLD ME Y+  SDG +DARPE ++QVGVTP G E+PR HC++  Q     RP++LCPPE DPKW
Sbjct:   47 AAECEKVAEALHKYGALIIRDPRVRAEDNDRFLDLMERYFEMSDGERDARPEVAFQVGVTPSGKEKPRNHCDKYGQYQRKDRPVSLCPPELDPKW 141          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A7S0XDN5_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDN5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.720e-29
Identity = 47/93 (50.54%), Postives = 71/93 (76.34%), Query Frame = 3
Query:   30 DCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPKW 308
            +C+++A++  +YG+ +V DPRV+E +N  FL+ ME Y+ QS+G+ DARP+ SYQVGVTPE TE+PR++C ++  +    +PL+ CPPE DPKW
Sbjct:   13 ECKKVAEAFHKYGVCIVKDPRVNESNNSTFLNMMEQYFEQSNGIDDARPDLSYQVGVTPERTEKPRDYCSKIGSIGPDDKPLSPCPPELDPKW 105          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A6G0W8E9_9STRA (2OG-FeII_Oxy domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8E9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.970e-29
Identity = 52/92 (56.52%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   30 DCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPK 305
            +C+++AD L +YG+++V DPR +E DN  FLD ME Y+  +D V+DARPE+SYQVGVTPE  E+ R HC R   L +G+RP+TLCPPE D K
Sbjct:   30 ECKKVADCLYKYGVLVVRDPRATEADNGRFLDLMERYFEHTDFVQDARPEYSYQVGVTPERQEKARNHCARAETLSEGNRPVTLCPPELDKK 121          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A2P4XQH5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQH5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.300e-29
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 3
Query:   18 GDAGDCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPK 305
            GD  +C + A+SL ++G++ V D R ++ DND FLD ME Y+  +D V+DARPE+ YQVGVTPE  ER R HC R   L   + P++LCPPEAD K
Sbjct:   16 GDKAECEKAAESLHKFGVLCVRDERAADSDNDTFLDMMERYFESTDFVEDARPEYHYQVGVTPERKERARNHCARAEMLDKRYAPVSLCPPEADKK 111          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A4D9D5Q0_9STRA (2OG-FeII_Oxy domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5Q0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.460e-29
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 3
Query:   30 DCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPKW 308
            +CR+ A SL+  G + V D RV E D++ FLD +E+Y+A SDG +DARP+  YQVGVTP   E PR HC R S LP  HRPLTLCPP ADPKW
Sbjct:   27 ECRKAALSLETTGCLYVRDSRVREADSNAFLDMLESYFAASDGKRDARPDLYYQVGVTPAMIETPRNHCTRASSLPLLHRPLTLCPPHADPKW 119          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A0P1APJ8_PLAHL (Isopenicillin N synthase-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APJ8_PLAHL)

HSP 1 Score: 115 bits (288), Expect = 6.810e-29
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 3
Query:   18 GDAGDCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPK 305
            G   +C + ADSL R+G+  V D R ++ DND FLD ME Y+  +D ++DARPE+ YQVGVTPEG ER R HC RV +L   H P++LCPPEAD K
Sbjct:   16 GSKAECEKAADSLHRFGVFCVRDERAADSDNDAFLDMMERYFESADFLEDARPEYHYQVGVTPEGKERARNHCARVEKLEKQHVPVSLCPPEADKK 111          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A485KKI3_9STRA (Aste57867_8531 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKI3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.110e-28
Identity = 51/92 (55.43%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   30 DCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPK 305
            +C+++AD L +YG+++V DPR +E DN  FLD ME Y+  +D V+DARPE+S+QVGVTPE  E+ R HC R   L + HRP+TLCPPE D K
Sbjct:   29 ECKKVADCLHKYGVLVVRDPRATEADNGRFLDLMERYFEHTDFVQDARPEYSFQVGVTPEEQEKARNHCTRAEHLEEVHRPVTLCPPELDKK 120          
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Match: A0A3R6Y8Z9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Y8Z9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.640e-28
Identity = 50/92 (54.35%), Postives = 68/92 (73.91%), Query Frame = 3
Query:   30 DCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVKDARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPK 305
            +C ++A+ L ++G+++V DPR +E DN+ FLD ME Y+ ++D V+DARPE+SYQVGVTPE  E+ R HC R   L   HRP+TLCPPE D K
Sbjct:   31 ECNKVAECLHKFGVLVVRDPRATEADNNRFLDLMERYFERTDFVEDARPEYSYQVGVTPEQQEKARNHCTRAEGLAKEHRPITLCPPELDKK 122          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12983.1811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB5_ECTSI6.260e-5482.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZA03_9STRA1.250e-3467.032OG-FeII_Oxy domain-containing protein n=1 Tax=Tri... [more]
A0A7S1XUY1_9STRA3.400e-3053.68Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0XDN5_9STRA2.720e-2950.54Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6G0W8E9_9STRA2.970e-2956.522OG-FeII_Oxy domain-containing protein n=1 Tax=Aph... [more]
A0A2P4XQH5_9STRA3.300e-2952.08Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A4D9D5Q0_9STRA5.460e-2959.142OG-FeII_Oxy domain-containing protein n=2 Tax=Mon... [more]
A0A0P1APJ8_PLAHL6.810e-2955.21Isopenicillin N synthase-like n=1 Tax=Plasmopara h... [more]
A0A485KKI3_9STRA1.110e-2855.43Aste57867_8531 protein n=1 Tax=Aphanomyces stellat... [more]
A0A3R6Y8Z9_9STRA1.640e-2854.35Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12983contigS-dermatodea_contig12983:5102..6424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue4.5e-43
Seed eggNOG ortholog2880.D8LCB5
EggNOG free text desc.dioxygenase activity
EggNOG OGs2QR0G@2759,COG3491@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIsopenicillin N synthase-like
Ec32 orthologEc-14_005370.1
Exons2
Model size309
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12983.1811.1prot_S-dermatodea_contig12983.1811.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12983 5116..6424 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.0503387-UTR-S-dermatodea_contig12983:5101..51151622924270.0503387-UTR-S-dermatodea_contig12983:5101..5115Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12983 5102..5115 +
1694079139.5573225-UTR-S-dermatodea_contig12983:5101..51151694079139.5573225-UTR-S-dermatodea_contig12983:5101..5115Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12983 5102..5115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.0604432-CDS-S-dermatodea_contig12983:5115..52801622924270.0604432-CDS-S-dermatodea_contig12983:5115..5280Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 5116..5280 +
1694079139.566936-CDS-S-dermatodea_contig12983:5115..52801694079139.566936-CDS-S-dermatodea_contig12983:5115..5280Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 5116..5280 +
1622924270.0726523-CDS-S-dermatodea_contig12983:6295..64241622924270.0726523-CDS-S-dermatodea_contig12983:6295..6424Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 6296..6424 +
1694079139.5867956-CDS-S-dermatodea_contig12983:6295..64241694079139.5867956-CDS-S-dermatodea_contig12983:6295..6424Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 6296..6424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12983.1811.1

>prot_S-dermatodea_contig12983.1811.1 ID=prot_S-dermatodea_contig12983.1811.1|Name=mRNA_S-dermatodea_contig12983.1811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=98bp
MGDAGDCRRLADSLKRYGIVLVLDPRVSEVDNDLFLDQMETYYAQSDGVK
DARPEFSYQVGVTPEGTERPREHCERVSQLPDGHRPLTLCPPEADPKW
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mRNA from alignment at S-dermatodea_contig12983:5102..6424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12983.1811.1 ID=mRNA_S-dermatodea_contig12983.1811.1|Name=mRNA_S-dermatodea_contig12983.1811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1323bp|location=Sequence derived from alignment at S-dermatodea_contig12983:5102..6424+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTGGGGGAAAAGATGGGCGACGCCGGCGACTGTCGAAGACTTGCGGAC TCTCTAAAACGATACGGTATCGTGCTCGTGCTTGACCCCAGGGTATCGGA GGTAGACAATGACTTGTTCCTCGACCAGATGGAGACGTACTACGCCCAGA GCGACGGAGTCAAGGACGCGAGGCCAGAGGTACCACTGGTGGCGTGATTT CTGTGGTCTGAGGATGGCGGTGGCATGGAAATTAGTTCCTTTGCGGGGAG CAATGGTGTTTGAATTCAGGCCTTTTGTGTGCTACCCTGTGTATGATATG ATATCATCAGGCTTTTGTCCTGCCGACGCCCCAGCGGTCAAAGGTCAAAC AAGCGCCACGCTACAAGTGCTTGTATTGGATTATTGGATTGCTGCTGCGC AGTTCGTTCGATTCCCCACGCTCCTTGTGCTCTCATGTATCTACAACGAC AGCCGAATCGTAAATGGTGATCCCCCCAGATTGCTGATCGGTTGTGTTCG GCGCGTATGTTTGTGGGTTATCAACGCAGAGCAGTTGGAATTCGACTGGT TTCGTAAACCGTTAATTAAAACTGTCACACTGGCTCTATCTCATATTGCG ATCTGGCCGTAAACCTTCCGCACAAATGCAAGCATCTGCTACAGCAGTAC GCATACTTGTAGCCTACTTGTACATGAAAGACGGGGTTGTCCCCCCTGTC GATACCACGGGGTCTGTCATCTGTTAGCCCAATGCATGCTTCGCCACGGG CGATCGACTGCTGACGTAGAGTGCCCCATCCTGGGTTCTATCATCATGTC ACATGTACTTTCTACAAGTATGGTGGTGGGTTTGTTCGGGCATGAACTAT GCATATACGAAGTATATACTGTATATGGAATTTGAAGAACGGGCCCATTC AAAATGGTTTTGCTTGAGAGATTGTACCCACTCTGTGCTGGACAGCGCAT CCCGTTGTCTGCATCGACCATAATGCAGGGCAATCAGTTAGGAGTTAGGA TACGCCCAGATCCAATCCAACCATATATCGATCGTACTCTGACCACAAGA CCACAAGTCGGGTCGGATTATGCCGATCGGCTATACGTGTGCAAATAAAA AATTAAAATTAAAAAATAAAAACTCTATCGCGTCTGCGTTGACAAACGTT TGGTGCCTCGTGCCCACACCTCATCGGGAAAATGGCGGTGCCAGTTTTCG TACCAAGTGGGCGTTACGCCGGAGGGCACAGAGCGGCCGAGGGAGCACTG CGAGCGCGTCAGCCAGTTGCCGGACGGACATCGGCCATTGACGCTGTGCC CCCCTGAGGCGGACCCGAAGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12983:5102..6424+

>mRNA_S-dermatodea_contig12983.1811.1 ID=mRNA_S-dermatodea_contig12983.1811.1|Name=mRNA_S-dermatodea_contig12983.1811.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at S-dermatodea_contig12983:5102..6424+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGACGCCGGCGACTGTCGAAGACTTGCGGACTCTCTAAAACGATA
CGGTATCGTGCTCGTGCTTGACCCCAGGGTATCGGAGGTAGACAATGACT
TGTTCCTCGACCAGATGGAGACGTACTACGCCCAGAGCGACGGAGTCAAG
GACGCGAGGCCAGAGATGGGCGACGCCGGCGACTGTCGAAGACTTGCGGA
CTCTCTAAAACGATACGGTATCGTGCTCGTGCTTGACCCCAGGGTATCGG
AGGTAGACAATGACTTGTTCCTCGACCAGATGGAGACGTACTACGCCCAG
AGCGACGGAGTCAAGGACGCGAGGCCAGAGTTTTCGTACCAAGTGGGCGT
TACGCCGGAGGGCACAGAGCGGCCGAGGGAGCACTGCGAGCGCGTCAGCC
AGTTGCCGGACGGACATCGGCCATTGACGCTGTGCCCCCCTGAGGCGGAC
CCGAAGTGGTTTTCGTACCAAGTGGGCGTTACGCCGGAGGGCACAGAGCG
GCCGAGGGAGCACTGCGAGCGCGTCAGCCAGTTGCCGGACGGACATCGGC
CATTGACGCTGTGCCCCCCTGAGGCGGACCCGAAGTGG
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