mRNA_S-dermatodea_contig12961.1800.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12961.1800.1
Unique NamemRNA_S-dermatodea_contig12961.1800.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.080e-75
Identity = 144/265 (54.34%), Postives = 154/265 (58.11%), Query Frame = 1 
Query:    1 QVATGYCTRTLTGHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWECR*RRRRKKCETFFFSLFFFARALLSFSRRGWAGRGGAQSR 795
            + ATG+CTRTL G +EWVRRVALSDDG                               VVE++AFAPESAER L+TA                                G  GGGG  GAV RRF+ASGSRDKTVKLWNA+VG CLMTFSVHENWVRCV  HPSGAFVLSASDDRSVRAFDVKTGRCAR LEDAHGH VT+LAMH TSPIVVSGGVD ELHVWE                        LS +   W GRGG   R
Sbjct:  230 EAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVESIAFAPESAERALATAV-------------------------------GSEGGGGGEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWE------------------------LSLTMGTWGGRGGGGER 439
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A5D6Y4C8_9STRA (Lissencephaly-1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.890e-59
Identity = 106/229 (46.29%), Postives = 148/229 (64.63%), Query Frame = 1 
Query:    1 QVATGYCTRTLTG-HTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGD-AGGGGVLGAVGRR--FLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            ++ATGYC  TL G H++WVR VA+SDDG  LASCGND+S+  W +   + L  +R+H HVVE+VAFA   A+         +    ++   +           A G G G   A   G +GA  RR  FL SGSRD+TV+LW A  G  LM F+ HENWVRCV FHP G +V+S ++DR++R +D++TGRC RTL++AH HF+TS  +H + P++V+GG+D+ ++VWEC
Sbjct:  234 ELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQE-------QAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 197 bits (500), Expect = 1.730e-56
Identity = 99/233 (42.49%), Postives = 144/233 (61.80%), Query Frame = 1 
Query:    4 VATGYCTRTLT-GHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAP-----ESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRR---FLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            ++TGYC  T++ GH +WVR + +SDDG  LASCGND+++  W +   + L  LR+H HVVE+V FA      ++ E+ L+   +    AP                         DA  G    + G R   F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV FHP G +V+S ++D+++R FD++TGRC RT+++AHGHF+TSL +H T P++V+G +D+ ++VWEC
Sbjct:  218 ISTGYCLHTMSNGHADWVRNITVSDDGLYLASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVGAPL------------------------DAANGSAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A484E3V1_BRELC (Lissencephaly-1 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC)

HSP 1 Score: 194 bits (492), Expect = 5.390e-55
Identity = 104/233 (44.64%), Postives = 146/233 (62.66%), Query Frame = 1 
Query:    1 QVATGYCTRTL-TGHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPY----SNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRR---FLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            +++TGYC  TL TGHT+WVR VA+S DG  LASCGND+S+  W +   + L  +R+H HVVE+V FA    E+ +    +   +A      +NG+S              D   G+  G  V+     R    L SGSRD+TV+LW A  G  L+ F+ HENWVR V FHPSG + LSA +D+++R FD+++GRC RTL++AH HFVT L +H + P++VSGG+D+ ++VWEC
Sbjct:  230 ELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVT-----DSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A2D4CDK0_PYTIN (Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 192 bits (489), Expect = 1.170e-54
Identity = 97/235 (41.28%), Postives = 139/235 (59.15%), Query Frame = 1 
Query:    1 QVATGYCTRTLT-GHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAE---------RTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            +++TGYC  T+  GH +WVR + +SDDG  LASCGND+S+  W +   + L  LR+H HVVE+V FA   A+         + L T  S S+                       +G G       V      +FL SGSRD+TV+LW A     LM+FS HENWVRCV FHP G + +S ++DR++R  D++TGRC RT++ AH HF+TSL +H + P++++GG+D+ ++VWEC
Sbjct:  231 EISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKFHAQKLVTVSSPSSETAL-------------------NGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 192 bits (487), Expect = 3.430e-54
Identity = 101/236 (42.80%), Postives = 147/236 (62.29%), Query Frame = 1 
Query:    1 QVATGYCTRTLTG-HTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAE---------RTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGR-RFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            +++TGYC  TL G H++WVR VA+SDDG  LA+CGND+S+ +W +   + L  +R+H HVVE+V FA   A+         + L  AG+        NG +           A       D        +V R +FL SGSRD+TV+LW A  G  LM F+ HENWVRCV FHP G + +SA++D+++R +D++TGRC RTL++AH HF+TS+ +H T P+++SG +D+ ++VWEC
Sbjct:  236 EISTGYCVNTLNGGHSDWVRDVAVSDDGLYLATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAV---VAIGNGEA----VARSPEDALTTDMVVDVTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: W7TVA4_9STRA (Platelet-activating factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.790e-53
Identity = 100/227 (44.05%), Postives = 133/227 (58.59%), Query Frame = 1 
Query:    1 QVATGYCTRTLTG-HTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWECR 678
            +V+TG+C R+L G HT+WVR +A S DG +LAS G+D+ V VW++     +  LR+H+HVVE VAF P      +      ST     NG +                           G+    +L SGSRDKT+ LWNA  GQCL+  + HENWVR V FHPSG F+LS SDDRS+R FD+   RC R+L DAH  FV++LA H T P + +G V++E+ +WECR
Sbjct:  231 EVSTGFCQRSLVGAHTDWVRCIATSADGALLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQSQ--------------------GSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: F0WCC4_9STRA (Lissencephaly-1 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.890e-50
Identity = 97/230 (42.17%), Postives = 137/230 (59.57%), Query Frame = 1 
Query:    4 VATGYCTRTLT-GHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGR-----RFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            ++TGYCT+TL  GHT+W+R +AL+DD ++LAS           +   + +  +R+H HV+E + F+  + E   +        AP     S              + E  D    GV    G+     R+L SGSRD+TV+LW A  G  LM F+ HENWVR V FHPSG +V+SA++D+SVR FD++TGRC RTL DAH HFVT L +H T P+++SGG+D+ ++VWEC
Sbjct:  229 ISTGYCTKTLVNGHTDWIRDIALTDDSQLLASXXXXXXXXXXXMQTFRPIQTIREHEHVIECITFSKTAVEHRGTEKAVSRKVAPAGLANS------PAAMMILANSENRDTAENGVHLDHGKAPKKLRYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A329RP37_9STRA (Lissencephaly-1 homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RP37_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.650e-48
Identity = 97/230 (42.17%), Postives = 131/230 (56.96%), Query Frame = 1 
Query:    1 QVATGYCTRTLT-GHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGR----RFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            +++TGYC  TL  GHT+WVR VA+SDDG  LASCGND+S+  W +   + L  +R+H HVVE+V FA    E+ +    S   +A  +   +                  G+  G   + +V      +FL SGSRD+TV+LW A  G  LM F+ HENWVR V FHPSG + LSA +D+++R FDV TGRC RTL++AH HFVT L +               ++VWEC
Sbjct:  230 ELSTGYCVNTLNAGHTDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGQEQVIEKIHSKKLAATGALAPANGSVSPKSNNHDMTASSAGEPTGAVAVASVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMMFASHENWVREVRFHPSGKYALSAGEDKTIRVFDVDTGRCVRTLDEAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 459
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BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: H3H2U3_PHYRM (Lissencephaly-1 homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3H2U3_PHYRM)

HSP 1 Score: 176 bits (447), Expect = 2.360e-48
Identity = 103/243 (42.39%), Postives = 137/243 (56.38%), Query Frame = 1 
Query:    1 QVATGYCTRTLT-GHTEWVRRVALSDDGEMLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAE---------RTLSTAG----SDSTSAPYSNG---TSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGR-RFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 675
            +++TGYC  TL  GH++WVR VA+SDDG  LASCGND+S+  W +   + L  +R+H HVVE+V FA    +         + L+T G    S+ +S P SN    TS           A              +  V R +FL SGSRD+TV+LW A  G  LM F+ HENWVR V FHPSG + LSA +D+++R FD++TGRC RTL+DAH HFVT L +               ++VWEC
Sbjct:  230 ELSTGYCVNTLNAGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGIQEQVIERAHAKKLATTGALTPSNGSSLPESNNHDMTSSTAGEPTGAVAAT------------TVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMLFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIETGRCVRTLDDAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 460
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI1.080e-7554.34Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y4C8_9STRA1.890e-5946.29Lissencephaly-1 homolog n=1 Tax=Pythium brassicum ... [more]
A0A8K1CCN7_PYTOL1.730e-5642.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484E3V1_BRELC5.390e-5544.64Lissencephaly-1 homolog n=1 Tax=Bremia lactucae Ta... [more]
A0A2D4CDK0_PYTIN1.170e-5441.28Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum... [more]
K3WAC5_GLOUD3.430e-5442.80Lissencephaly-1 homolog n=1 Tax=Globisporangium ul... [more]
W7TVA4_9STRA2.790e-5344.05Platelet-activating factor acetylhydrolase ib subu... [more]
F0WCC4_9STRA4.890e-5042.17Lissencephaly-1 homolog n=1 Tax=Albugo laibachii N... [more]
A0A329RP37_9STRA1.650e-4842.17Lissencephaly-1 homolog n=16 Tax=Peronosporaceae T... [more]
H3H2U3_PHYRM2.360e-4842.39Lissencephaly-1 homolog n=3 Tax=Peronosporaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12961contigS-dermatodea_contig12961:887..6842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue8.8e-54
Seed eggNOG ortholog2880.D7G1C0
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size895
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12961.1800.1prot_S-dermatodea_contig12961.1800.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12961 971..6628 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.2020133-UTR-S-dermatodea_contig12961:886..9701622924269.2020133-UTR-S-dermatodea_contig12961:886..970Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12961 887..970 +
1694079138.9276767-UTR-S-dermatodea_contig12961:886..9701694079138.9276767-UTR-S-dermatodea_contig12961:886..970Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12961 887..970 +
1622924269.2530077-UTR-S-dermatodea_contig12961:6628..68421622924269.2530077-UTR-S-dermatodea_contig12961:6628..6842Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12961 6629..6842 +
1694079138.9774673-UTR-S-dermatodea_contig12961:6628..68421694079138.9774673-UTR-S-dermatodea_contig12961:6628..6842Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12961 6629..6842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.2128096-CDS-S-dermatodea_contig12961:970..10061622924269.2128096-CDS-S-dermatodea_contig12961:970..1006Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 971..1006 +
1694079138.9396367-CDS-S-dermatodea_contig12961:970..10061694079138.9396367-CDS-S-dermatodea_contig12961:970..1006Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 971..1006 +
1622924269.220776-CDS-S-dermatodea_contig12961:2116..24431622924269.220776-CDS-S-dermatodea_contig12961:2116..2443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 2117..2443 +
1694079138.9497664-CDS-S-dermatodea_contig12961:2116..24431694079138.9497664-CDS-S-dermatodea_contig12961:2116..2443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 2117..2443 +
1622924269.228912-CDS-S-dermatodea_contig12961:4367..44691622924269.228912-CDS-S-dermatodea_contig12961:4367..4469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 4368..4469 +
1694079138.9593375-CDS-S-dermatodea_contig12961:4367..44691694079138.9593375-CDS-S-dermatodea_contig12961:4367..4469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 4368..4469 +
1622924269.2399573-CDS-S-dermatodea_contig12961:6496..66281622924269.2399573-CDS-S-dermatodea_contig12961:6496..6628Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 6497..6628 +
1694079138.9686582-CDS-S-dermatodea_contig12961:6496..66281694079138.9686582-CDS-S-dermatodea_contig12961:6496..6628Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12961 6497..6628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12961.1800.1

>prot_S-dermatodea_contig12961.1800.1 ID=prot_S-dermatodea_contig12961.1800.1|Name=mRNA_S-dermatodea_contig12961.1800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=199bp
MLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAG
SDSTSAPYSNGTSGGAAAAAAAEEAWGDGEGGDAGGGGVLGAVGRRFLAS
GSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVR
AFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWECR*
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mRNA from alignment at S-dermatodea_contig12961:887..6842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12961.1800.1 ID=mRNA_S-dermatodea_contig12961.1800.1|Name=mRNA_S-dermatodea_contig12961.1800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5956bp|location=Sequence derived from alignment at S-dermatodea_contig12961:887..6842+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGCGACGGGATACTGCACGCGTACGCTGACCGGGCATACGGAGTG
GGTGCGGAGGGTGGCTCTGAGCGACGATGGCGAGATGCTGGCTAGCTGTG
GGAACGACCAGTCCGTCAGGGTGCGTATCGATAGAGAAACATATTATTTG
AGAACGACCAGTCTTGTCCTGTCTTGTCTTGTCTTGTCTTGTCAAGTTGC
GTACTGGTATGTACGAAGTTGCAGTCCTAGATCGGACCAGTTGGGTCTCA
GGTGAAGTTGCAGTACTACTATAGATGGATCAGTTTGTTCAGGGTGCGTA
ACTGTAAGAGTTGCAGTAATTGATCGATCAGTCCGTCGGGCTGCGTATCG
GTGGAGCAGCAACAACGTTCGAACGACCAGCCTTGTCAGGTTGCGTGCGA
AGTTAGTTGCGGTACAGTATGATATGATGTAGTATTTTTTTATTCTACTT
TTTGACGGAGGAACACAGTTAACAGGTTCAGTAGGTCCGAAGTTGCCCCA
AGTCTGTCTCAACTGAGAACAAGACAAAAATAGGCCGGAATTATCGAGAT
TTCATGGTCGATGCTGTTGTACTTCGAAGTATAAGGCTATAGACCTCGTG
ATTTTTTTCTTCCGTGAGGTTTTTGTTTTTGTTTGGGTATTGATGGGAAC
AGGCCGGTCGGTGTTCACGGTCCTGAGATTTGGTCCTGATCACTGTGTAC
CTCCCTATTAATAATAGATCGGACCAGTTCTTCAGGTGAAGTTGCAGTGC
TATTAATAGATCGATCAGTTCTTCAGGGTGTGTATGTATATGGAGTTGCA
CTACTATTAATATTACAATACTTGAACGACCAGTCTTGTAAGGTTTGCGT
ATCGGTATTCACAGAGCAGAACAAAGATGCTTGAACTACGAGTCTCGCCA
AGTTACGTATTGTACAAATATGAAGAAGCACGGCCATACCGACCAGTTTT
TCAGTGCGCCTATGATACGGCGACCAACAACTACCAGTCTGTCAAGAAAG
GCTGCGTATGGTTCGGCAACACAAGGAAGGCGTTGGGGTGCTTGCTTGTA
CATGAGGGCCGTCGGAGGTGCGCGAGTTTAATATTTATGCTCACCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCACACGACCGGGAGCGGCCCCCGGCGGGGCGGCTGCCACACCCCCCCC
ACCCCACCCCCGCCGCCCCCCACAAAACAGGTATGGAGCGTGCACGGGGG
GCAGTGCTTGCATGACCTGCGACAACACACGCACGTCGTTGAGACGGTCG
CCTTTGCCCCTGAGAGCGCGGAGCGAACCCTCTCCACGGCGGGCTCGGAC
TCCACCTCCGCGCCGTACTCGAACGGCACCTCGGGGGGCGCAGCGGCGGC
GGCGGCGGCGGAGGAGGCGTGGGGGGACGGGGAGGGGGGGGATGCGGGTG
GGGGCGGGGTGCTGGGCGCGGTAGGTCGGCGGTTTCTGGCGTCCGGATCG
AGGGACAAGACGGTGAAGTTGTGGAATGCGACCGTGGGGCAGTGCCTCAT
GACCTTCGTGAGTGGCGTGTGGATGAAGTGTCTATTAGTAATAGTATAAT
ATGATATGATACTCGCGATGTGTTTGTGTTTGTTGTATCATACTTAAGTG
TTTGTTAATTTTAATATCATATAATATGTTACTGTATATGCCGGGTTTTT
TTTCGAGATTGTTTTGCGACTTTGGACTTTTTTTTTCTCTCGAGTCTTGA
ATTGATATTTTGATGATAACCAGGTGTATACTTGTATGATATGATGTGGT
GGGTATAGAGTGGCCTTTTGAGGCCTTTCGTTTTTTTTTTTTTCCAACCT
GATGTTTTGTCATAATAGGTCGTGCAGCTACCACCCCTTCCTCTGCCAAT
GCAGCACACACCTCACTGGGCGTAGCCATGGCTTTTTTTACGATTCACCA
GTACTTCTTTTTCGCTACGATATCTTTGTGTATATAATCGCTCCGATGCG
TGCTGTAACGCGCACGAGAGCTCTCGCAACACGTATTTATTTCTATCTCT
GATGACATTTTTGATTCACATCCCATGGGTTCCAATTCCGGACACGACCC
GTGCGTGCCATGTCTCCCCTGAAAATACGAAAAAATATTTGTAAAACATA
GAGCTAGCGAACGTTGGGGTCCAATCTTGTTGTAGTGGAAAAGATAAAAT
GTGGCTCAAGCTACTCAGTGGAGGTCTACGTTATGTACGGTATTGTGGGA
TTGTATAAATGTTACTACTCTCTGGGTCAGGGTGTTGCACTGCAATACAA
TTAAAACGTCGTAACTCTGCGAATGGAATGTTCTGCTCATCCTAACTTGT
AGGCTATACACCCCCACGTATTGCGTCATAGAAATGGAACGGCCACCCAT
TACGAAGAAGGAGATCCTCGTACTCGCAAGTATGTAGCACTGGTCGACGT
CGTGGTACTCGAATGGAACGCAGTCGAATGCAGTACATGGTACTGTAGCA
CATGGAGAGGTTGCGAACAACAGTTGTTTACTCGCTCAGCCAAGCACAAC
ACGAGTGCACCTGGGGATGAGTTGGAGCCTGGGAAAAAGAAAGTGAGCAA
CCTTGGGAGACCAAGCACATACGATACCCAGCATAGCGGATCGCCTCACG
GGGAAACCTTGTTCGCAATGGTGCCATGACCCCCCCCCCCGCCCCCCCGA
GGTACAAGGGACATATATTGATGAATTGACAGCGCTTTGCATGTTCGTTT
GTTTAGAATTTAGAGCGGAACCTTGATGCAAAAAAATGAGACCGTAATAT
GGAGAAGAGGGTAGTCTCTAATACCTACACGCTTTTATTCATAGGGTTTG
AGAGTAGTTATTTAAAGAGTAGTGAGTGGCCTGATTTTCCCCAGCCACAT
ACTGTATATATTTATATTTCGCCTGCCAACGCACACCTCACTGGCGTAGC
CGTGGCTGTTATACACTCTAGTGTGTTATTGGCCTTGGCTTTGCGCTGAT
CCGGGGCGATGCGGCGTCAGCCGCCAAAATATTACTTATTCTGATTAGTT
ATTTTTCTCCTTGACTCTTTGCGTGTCTGACCACACGTCGGGTCGGATTA
TGCCGATCGGCTACACGTGTGCAAATCAATCAAATCAATCAATCAAACTA
TTCATCGTATGCACATGTTAGCCCCCCCCCTCCCCCCGGTATGTCCAATC
AACCCATGGCATATCGGTTGGCGTCGCCAACACAAGGATGATGGCTAGCA
GCCGGCGTCATCCTTATGAAAAACGCAGCCTAGCCTGCCCGGCGAAAACA
CACCCGGCATATCGCTCCGTCCCGTCCCGGCATTGTTGGGACGCGTGGTC
TATGTCCGTCTGGATACGACATGCATTTAACGTAAGTACCCCGCCCTCGC
CCCCCCTCCCCCCCCCCCCGATTCGTTCGTGTTTTTGTTGTTGTTTGTCC
TTGTTTGGCTTTCTTATTTTTGGTGTCCCAGAGCGTTCACGAAAACTGGG
TGAGGTGCGTGGCGTTTCACCCCAGCGGAGCGTTTGTCCTGAGCGCGTCC
GACGATCGATCCGTGAGGGCTTTCGACGTCAAGGTGAGGAAGCGCGGGGG
GCTTGGGCGGGGTGGGAGAGAGAGAGCTCAATCAAATTGATCGATTGGAT
TGATTTGCTCACGTCTATGATACGATAGCCGATCTGCTTGATCCGAACCG
ACTTGTGGTCAGATGCTATCATATAGAATATACTGTAGTACAGCAAAGAG
TCAAGGAGAAAAAATGAATTATCAGAACTAACTCTACTTGTACGATACAT
CGTACCGTCCCTGGTAAAAAAAATAAGTAGACAGACAGGATAGGAAAAAT
ATTTCTAGAACACAAGAGCGGGCATTGGGTTGCAACGAATTTAGAGGCAA
GGTGGCCCGAGCTAACTCAGTGGAGGTCTGCGTTATGGTTGATGCTATAG
GGTTTAACGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCGGTCTGAAGCA
CCCCGGCACCCAGCCCCCCAACAACACACCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCACACCTCCGCCCCCAACCCACCAAAAGCGCNNNNNNNNNN
TAATCATGTCTGTTTATCGATTCATATACACCCCCCCCCCCCCCCCCCAC
TCGGCTTTTTCGTTCACCTCATTTTGTATTACAAACCAATTTGAACCCCC
CCCCCCCCCCCCCCCCGCCCGGAAGCAGTAAATGGTTTAATCCACATAAG
GGCGAGCGTTGGGGTACCCTACTTTTTGCACAGGAGGGAACGTATTGTAG
TCCAAGCCATCATACGCCCTATGGAGATTACCCTACGTGATGTGCTATGA
TACGGTGTGTACGCTGTGTGTGATGCTGTTGGGATGGATTATTTGTGGAA
GTGTACTTGTCTCCTTGTCTGCTGGGCGACATCATGTGGCGTAGTAACTC
TCTGAGACGCTGTGTGCTTTTGGTGCACCGACAACATGTGCCGTCGTGAC
TCCTTGAATTGTGGGATTTTGATTTTGAGCGCAGGGTTTTTTTCTTGACG
ACCTTGTGTTTCCCACACTATCTCTTCTGCGGCTCGTCCTTGGTTCCGAG
CTATACCCGTATACCCCTAAAAAGTGAATATTTCAGAAACATAGAGCGAG
CGTTGGGGTCTCACCTTTTCAAGAGGGAAGATCGTCCAAGCTGTTAAACA
CGCCTATGGAGGCGTACGTTGCGTGTGATGCTATGGTGTCATATCATGTA
TGATGTTCTCTGGTTGTGGAACCAGTAAGTGTCTTGTACTCAGCGACATC
CTTGTAATATCATACCGTTTGGCGTCGCAAACGCAAGGATGATGACGAGC
AGCTGGTATCGTATCATCCTCGTGAAACGCAGCCTGGCCTGCGAAAACCC
GGCATATCGCTCCGTCTCGGCATTGTTGGGACGCGTGGACTGTGTGCGTC
TGGATACGACATGTATTTGACATAAGTATAAGTACCCCCCCCCCCCCCCC
CAAGAAAGTAAAAACTTATAAAAACAAAAATATTTTTATAAAAAGATTGG
GGGACAATTTTTTTGGTAGAGGAAAATATGGCCCCATCTGACTCAGTGGA
ATATGGCCTACAAGTTTCTATACGATATTTGATGCTATATTTGATGGTAT
CGTGCCACATTACAATTAAGAGGTAACTCTGGGAATGGGTTGTTTTTACT
TGTGAGTTTTTTGTATCAACTTGTATTCGAGCCTGTTCTATTAATACCCA
CCCTTTTTTTGCGCATCCATTTGTTTTCGACCCTATTCTGCCCGTCCTTA
CTCCTAGCCCATACACGCGCGTCGTGTTCAGCAATAGTGATGGAGAAGCC
GCCCCACTACGAACGAATCCCTCGCACTCGCAGTAGTACTATTAATATTA
ATAGTCGAAGTCGTGGTACTCGGATGGAACTCAGTTGGTGGCAGTACATG
GAGTCGAGGCGTGGCAGTACATGGAGTCGAGGCGAACAGCATTTTACTCG
ATCAACCAAGCAGAACACGATTTCACCTGGGGATGACCCCTCCCCCCCCC
CCCCGCCCTGCGCGTGTGGCATTGCTTCCCTCTGTTACGCTACGTTCTGT
CGGAGCACAGACCGGACGGTGCGCGCGAACGCTGGAAGACGCACACGGCC
ACTTTGTCACATCGTTGGCGATGCACCACACTTCTCCCATCGTTGTGTCG
GGCGGCGTCGACCAGGAGCTGCACGTGTGGGAATGCCGCTGACGGCGTCG
ACGAAAGAAATGCGAAACCTTTTTTTTCTCTTTATTTTTTTTTGCCCGCG
CGCTGCTTTCGTTCTCGAGGAGAGGCTGGGCCGGGCGGGGCGGAGCGCAG
AGCAGAGCAGGGAGGGAGACAGCAGAAGAAGGGCAAAAGGGATGCCGCGT
GAATATCGCGCCCGTCGCAGCCTCATTGGGGTAATTTAGGGATCTTGAGG
TGCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12961:887..6842+

>mRNA_S-dermatodea_contig12961.1800.1 ID=mRNA_S-dermatodea_contig12961.1800.1|Name=mRNA_S-dermatodea_contig12961.1800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at S-dermatodea_contig12961:887..6842+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGCTAGCTGTGGGAACGACCAGTCCGTCAGGATGCTGGCTAGCTG
TGGGAACGACCAGTCCGTCAGGGTATGGAGCGTGCACGGGGGGCAGTGCT
TGCATGACCTGCGACAACACACGCACGTCGTTGAGACGGTCGCCTTTGCC
CCTGAGAGCGCGGAGCGAACCCTCTCCACGGCGGGCTCGGACTCCACCTC
CGCGCCGTACTCGAACGGCACCTCGGGGGGCGCAGCGGCGGCGGCGGCGG
CGGAGGAGGCGTGGGGGGACGGGGAGGGGGGGGATGCGGGTGGGGGCGGG
GTGCTGGGCGCGGTAGGTCGGCGGTTTCTGGCGTCCGGATCGAGGGACAA
GACGGTGAAGTTGTGGAATGCGACCGTGGGGCAGTGCCTCATGACCTTCG
TATGGAGCGTGCACGGGGGGCAGTGCTTGCATGACCTGCGACAACACACG
CACGTCGTTGAGACGGTCGCCTTTGCCCCTGAGAGCGCGGAGCGAACCCT
CTCCACGGCGGGCTCGGACTCCACCTCCGCGCCGTACTCGAACGGCACCT
CGGGGGGCGCAGCGGCGGCGGCGGCGGCGGAGGAGGCGTGGGGGGACGGG
GAGGGGGGGGATGCGGGTGGGGGCGGGGTGCTGGGCGCGGTAGGTCGGCG
GTTTCTGGCGTCCGGATCGAGGGACAAGACGGTGAAGTTGTGGAATGCGA
CCGTGGGGCAGTGCCTCATGACCTTCAGCGTTCACGAAAACTGGGTGAGG
TGCGTGGCGTTTCACCCCAGCGGAGCGTTTGTCCTGAGCGCGTCCGACGA
TCGATCCGTGAGGGCTTTCGACGTCAAGAGCGTTCACGAAAACTGGGTGA
GGTGCGTGGCGTTTCACCCCAGCGGAGCGTTTGTCCTGAGCGCGTCCGAC
GATCGATCCGTGAGGGCTTTCGACGTCAAGACCGGACGGTGCGCGCGAAC
GCTGGAAGACGCACACGGCCACTTTGTCACATCGTTGGCGATGCACCACA
CTTCTCCCATCGTTGTGTCGGGCGGCGTCGACCAGGAGCTGCACGTGTGG
GAATGCCGCTGAACCGGACGGTGCGCGCGAACGCTGGAAGACGCACACGG
CCACTTTGTCACATCGTTGGCGATGCACCACACTTCTCCCATCGTTGTGT
CGGGCGGCGTCGACCAGGAGCTGCACGTGTGGGAATGCCGCTGA
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