prot_S-dermatodea_contig12961.1800.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12961.1800.1
Unique Nameprot_S-dermatodea_contig12961.1800.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length199
Homology
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 4.160e-64
Identity = 115/166 (69.28%), Postives = 121/166 (72.89%), Query Frame = 0
Query:   31 VVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWE 196
            VVE++AFAPESAER L+TA                                G  GGGG  GAV RRF+ASGSRDKTVKLWNA+VG CLMTFSVHENWVRCV  HPSGAFVLSASDDRSVRAFDVKTGRCAR LEDAHGH VT+LAMH TSPIVVSGGVD ELHVWE
Sbjct:  288 VVESIAFAPESAERALATAV-------------------------------GSEGGGGGEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWE 422          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A5D6Y4C8_9STRA (Lissencephaly-1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.520e-47
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 0
Query:    2 LASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGD-AGGGGVLGAVGRR--FLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 197
            LASCGND+S+  W +   + L  +R+H HVVE+VAFA   A+         +    ++   +           A G G G   A   G +GA  RR  FL SGSRD+TV+LW A  G  LM F+ HENWVRCV FHP G +V+S ++DR++R +D++TGRC RTL++AH HF+TS  +H + P++V+GG+D+ ++VWEC
Sbjct:  264 LASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQE-------QAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 1.160e-45
Identity = 85/204 (41.67%), Postives = 123/204 (60.29%), Query Frame = 0
Query:    2 LASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAP-----ESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRR---FLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 197
            LASCGND+++  W +   + L  LR+H HVVE+V FA      ++ E+ L+   +    AP                         DA  G    + G R   F+ SGSRD+TV+LW A  G  LM F+ HENWVRCV FHP G +V+S ++D+++R FD++TGRC RT+++AHGHF+TSL +H T P++V+G +D+ ++VWEC
Sbjct:  247 LASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVGAPL------------------------DAANGSAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A2D4CDK0_PYTIN (Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN)

HSP 1 Score: 161 bits (407), Expect = 5.090e-44
Identity = 83/205 (40.49%), Postives = 118/205 (57.56%), Query Frame = 0
Query:    2 LASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAE---------RTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 197
            LASCGND+S+  W +   + L  LR+H HVVE+V FA   A+         + L T  S S+                       +G G       V      +FL SGSRD+TV+LW A     LM+FS HENWVRCV FHP G + +S ++DR++R  D++TGRC RT++ AH HF+TSL +H + P++++GG+D+ ++VWEC
Sbjct:  261 LASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKFHAQKLVTVSSPSSETAL-------------------NGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A7S2MUP0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUP0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.110e-44
Identity = 80/196 (40.82%), Postives = 111/196 (56.63%), Query Frame = 0
Query:    1 MLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWE 196
            +LA+ GND+ + V+     + L +LR H HV+E++AF        L+ A + +  AP S                                   R +LASGSRD+TVKLW+     CLM+F  HENWVR V  HP+G F++S  DD+S+R +D+K  RC RT++ AH HFVTS+AMHHT P++VSGGVDQ +  W+
Sbjct:   14 LLATSGNDRVIMVYDAESRKKLCELRGHDHVIESLAF--------LTCAATSAADAPKSATKLTPEERRRKEEI--------------------RDYLASGSRDRTVKLWSIKAASCLMSFESHENWVRGVLIHPNGKFLISCGDDKSIRVYDIKANRCLRTIDGAHSHFVTSIAMHHTLPVLVSGGVDQSVKCWQ 181          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: A0A484E3V1_BRELC (Lissencephaly-1 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC)

HSP 1 Score: 159 bits (401), Expect = 4.720e-43
Identity = 86/203 (42.36%), Postives = 123/203 (60.59%), Query Frame = 0
Query:    2 LASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPY----SNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRR---FLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 197
            LASCGND+S+  W +   + L  +R+H HVVE+V FA    E+ +    +   +A      +NG+S              D   G+  G  V+     R    L SGSRD+TV+LW A  G  L+ F+ HENWVR V FHPSG + LSA +D+++R FD+++GRC RTL++AH HFVT L +H + P++VSGG+D+ ++VWEC
Sbjct:  260 LASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVT-----DSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: W7TVA4_9STRA (Platelet-activating factor acetylhydrolase ib subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVA4_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.240e-42
Identity = 84/198 (42.42%), Postives = 111/198 (56.06%), Query Frame = 0
Query:    1 MLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWECR 198
            +LAS G+D+ V VW++     +  LR+H+HVVE VAF P      +      ST     NG +                           G+    +L SGSRDKT+ LWNA  GQCL+  + HENWVR V FHPSG F+LS SDDRS+R FD+   RC R+L DAH  FV++LA H T P + +G V++E+ +WECR
Sbjct:  260 LLASGGSDRLVAVWALDTCAPVAVLREHSHVVEAVAFPPPGVAVKIDGNKGGSTGLGSENGEASAGLQSQ--------------------GSAEEAYLVSGSRDKTIMLWNARTGQCLLRLADHENWVRSVRFHPSGQFLLSVSDDRSLRVFDIAKARCIRSLPDAHEQFVSALAQHPTLPYLATGSVNREIKLWECR 437          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD)

HSP 1 Score: 157 bits (396), Expect = 2.870e-42
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 0
Query:    2 LASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAE---------RTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGR-RFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 197
            LA+CGND+S+ +W +   + L  +R+H HVVE+V FA   A+         + L  AG+        NG +           A       D        +V R +FL SGSRD+TV+LW A  G  LM F+ HENWVRCV FHP G + +SA++D+++R +D++TGRC RTL++AH HF+TS+ +H T P+++SG +D+ ++VWEC
Sbjct:  266 LATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAV---VAIGNGEA----VARSPEDALTTDMVVDVTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: F0WCC4_9STRA (Lissencephaly-1 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.020e-38
Identity = 63/102 (61.76%), Postives = 82/102 (80.39%), Query Frame = 0
Query:   96 RFLASGSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWEC 197
            R+L SGSRD+TV+LW A  G  LM F+ HENWVR V FHPSG +V+SA++D+SVR FD++TGRC RTL DAH HFVT L +H T P+++SGG+D+ ++VWEC
Sbjct:  351 RYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452          
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Match: B8C7T8_THAPS (Platelet-activating factor acetylhydrolase beta subunit-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7T8_THAPS)

HSP 1 Score: 144 bits (364), Expect = 9.750e-38
Identity = 79/174 (45.40%), Postives = 101/174 (58.05%), Query Frame = 0
Query:   24 DLRQHTHVVETVAFAPESAERTLSTAGSDSTSAPYSNGTSGXXXXXXXXXXAWGDGEGGDAGGGGVLGAVGRRFLASGSRDKTVKLWN-ATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVRAFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWE 196
            +LR H HVVE+++F   S      +A S  T++     +S           +W                    +LASGSRD+TV+LW  A  G CLMTF  HENWVR V  HPSG  +LS  DDRS+R FD+K+ RC RT+EDAH HFVTS+AMH+T PI+VSGGVD  +  W+
Sbjct:  302 ELRGHDHVVESLSFLCSSLLPKKGSAASRPTTSAAEGASS-----------SW-------------------EYLASGSRDRTVRLWTVANGGSCLMTFRAHENWVRGVLIHPSGNHILSCGDDRSIRVFDIKSNRCLRTIEDAHPHFVTSMAMHYTLPILVSGGVDHAVKCWQ 445          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12961.1800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI4.160e-6469.28Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y4C8_9STRA2.520e-4744.22Lissencephaly-1 homolog n=1 Tax=Pythium brassicum ... [more]
A0A8K1CCN7_PYTOL1.160e-4541.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CDK0_PYTIN5.090e-4440.49Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum... [more]
A0A7S2MUP0_9STRA5.110e-4440.82Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A484E3V1_BRELC4.720e-4342.36Lissencephaly-1 homolog n=1 Tax=Bremia lactucae Ta... [more]
W7TVA4_9STRA1.240e-4242.42Platelet-activating factor acetylhydrolase ib subu... [more]
K3WAC5_GLOUD2.870e-4240.78Lissencephaly-1 homolog n=1 Tax=Globisporangium ul... [more]
F0WCC4_9STRA2.020e-3861.76Lissencephaly-1 homolog n=1 Tax=Albugo laibachii N... [more]
B8C7T8_THAPS9.750e-3845.40Platelet-activating factor acetylhydrolase beta su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 98..112
score: 45.62
coord: 2..16
score: 32.75
coord: 183..197
score: 28.99
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 114..153
e-value: 1.9E-9
score: 47.4
coord: 156..196
e-value: 1.3E-5
score: 34.7
coord: 18..111
e-value: 1.5E-5
score: 34.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 96..111
e-value: 0.0076
score: 17.1
coord: 115..152
e-value: 1.1E-9
score: 38.8
coord: 157..195
e-value: 1.5E-4
score: 22.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..24
score: 9.974
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 96..120
score: 9.807
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 164..198
score: 11.511
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 121..162
score: 13.65
NoneNo IPR availablePANTHERPTHR44129:SF1LISSENCEPHALY-1 HOMOLOGcoord: 1..198
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 1..198
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 183..197
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 98..112
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..198
score: 31.929
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..198

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12961contigS-dermatodea_contig12961:971..6628 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12961.1800.1mRNA_S-dermatodea_contig12961.1800.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12961 887..6842 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12961.1800.1 ID=prot_S-dermatodea_contig12961.1800.1|Name=mRNA_S-dermatodea_contig12961.1800.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=199bp
MLASCGNDQSVRVWSVHGGQCLHDLRQHTHVVETVAFAPESAERTLSTAG
SDSTSAPYSNGTSGGAAAAAAAEEAWGDGEGGDAGGGGVLGAVGRRFLAS
GSRDKTVKLWNATVGQCLMTFSVHENWVRCVAFHPSGAFVLSASDDRSVR
AFDVKTGRCARTLEDAHGHFVTSLAMHHTSPIVVSGGVDQELHVWECR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf