prot_S-dermatodea_contig9986.17905.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9986.17905.1
Unique Nameprot_S-dermatodea_contig9986.17905.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length159
Homology
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BLAST of mRNA_S-dermatodea_contig9986.17905.1 vs. uniprot
Match: A0A8H4KZB6_9HYPO (DNA-directed DNA polymerase n=1 Tax=Fusarium albosuccineum TaxID=1237068 RepID=A0A8H4KZB6_9HYPO)

HSP 1 Score: 79.0 bits (193), Expect = 4.080e-14
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 0 
Query:   15 RIAATLGYGPFAPPGTELCSVEVIPPLTVIGLDIECLMDPARNAFLYPNDGIICVSITGVEPFRHEDKDVNGVCFCK-ATVPIEEEDWDDNPGVAVIRCSTEVEMTKRAVDFIVQQEPDFVAIHNGYQFDLKLLAVHSVRDP 155
            R  A  GY P AP G  + S+  +P ++++GLDIE   +        P+D II   ++    +   DK+ +  CFC  A     +  W +     V + S   E+ +     I    PDFV IHNG+ FDL+ +A  S  DP
Sbjct:  122 RAVAISGYSPLAPKGLGISSISTMPKMSIVGLDIEVTTEVRNGGMCLPHDPIISTVVSNGGWY---DKEFDDKCFCLYAFGKCGKIKWPEGRSAHVTKVSGNEEIVRETYKIINTLSPDFVNIHNGFNFDLRCMAASSYADP 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9986.17905.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8H4KZB6_9HYPO4.080e-1431.69DNA-directed DNA polymerase n=1 Tax=Fusarium albos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 43..151
e-value: 1.4E-9
score: 39.9
IPR006133DNA-directed DNA polymerase, family B, exonuclease domainPFAMPF03104DNA_pol_B_exo1coord: 37..147
e-value: 5.2E-11
score: 42.3
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 37..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9986contigS-dermatodea_contig9986:3840..4316 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9986.17905.1mRNA_S-dermatodea_contig9986.17905.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9986 3840..4316 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9986.17905.1 ID=prot_S-dermatodea_contig9986.17905.1|Name=mRNA_S-dermatodea_contig9986.17905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=159bp
PLIASGGGSRLARERIAATLGYGPFAPPGTELCSVEVIPPLTVIGLDIEC
LMDPARNAFLYPNDGIICVSITGVEPFRHEDKDVNGVCFCKATVPIEEED
WDDNPGVAVIRCSTEVEMTKRAVDFIVQQEPDFVAIHNGYQFDLKLLAVH
SVRDPEVER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR006133DNA-dir_DNA_pol_B_exonuc
IPR012337RNaseH-like_sf