mRNA_S-dermatodea_contig9986.17905.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9986.17905.1
Unique NamemRNA_S-dermatodea_contig9986.17905.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9986.17905.1 vs. uniprot
Match: A0A8H4KZB6_9HYPO (DNA-directed DNA polymerase n=1 Tax=Fusarium albosuccineum TaxID=1237068 RepID=A0A8H4KZB6_9HYPO)

HSP 1 Score: 79.0 bits (193), Expect = 4.080e-14
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:   43 RIAATLGYGPFAPPGTELCSVEVIPPLTVIGLDIECLMDPARNAFLYPNDGIICVSITGVEPFRHEDKDVNGVCFCK-ATVPIEEEDWDDNPGVAVIRCSTEVEMTKRAVDFIVQQEPDFVAIHNGYQFDLKLLAVHSVRDP 465
            R  A  GY P AP G  + S+  +P ++++GLDIE   +        P+D II   ++    +   DK+ +  CFC  A     +  W +     V + S   E+ +     I    PDFV IHNG+ FDL+ +A  S  DP
Sbjct:  122 RAVAISGYSPLAPKGLGISSISTMPKMSIVGLDIEVTTEVRNGGMCLPHDPIISTVVSNGGWY---DKEFDDKCFCLYAFGKCGKIKWPEGRSAHVTKVSGNEEIVRETYKIINTLSPDFVNIHNGFNFDLRCMAASSYADP 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9986.17905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8H4KZB6_9HYPO4.080e-1431.69DNA-directed DNA polymerase n=1 Tax=Fusarium albos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9986contigS-dermatodea_contig9986:3840..4316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score77.4
Seed ortholog evalue6.7e-12
Seed eggNOG ortholog430998.XP_007675736.1
EggNOG OGs2060W@147541,29E3D@1,2RM7X@2759,38QX2@33154,3PSQ0@4751,3RC47@4890
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925441.975769-CDS-S-dermatodea_contig9986:3839..43161622925441.975769-CDS-S-dermatodea_contig9986:3839..4316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9986 3840..4316 -
1694079936.297126-CDS-S-dermatodea_contig9986:3839..43161694079936.297126-CDS-S-dermatodea_contig9986:3839..4316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9986 3840..4316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9986.17905.1prot_S-dermatodea_contig9986.17905.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9986 3840..4316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9986.17905.1

>prot_S-dermatodea_contig9986.17905.1 ID=prot_S-dermatodea_contig9986.17905.1|Name=mRNA_S-dermatodea_contig9986.17905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=159bp
PLIASGGGSRLARERIAATLGYGPFAPPGTELCSVEVIPPLTVIGLDIEC
LMDPARNAFLYPNDGIICVSITGVEPFRHEDKDVNGVCFCKATVPIEEED
WDDNPGVAVIRCSTEVEMTKRAVDFIVQQEPDFVAIHNGYQFDLKLLAVH
SVRDPEVER
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mRNA from alignment at S-dermatodea_contig9986:3840..4316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9986.17905.1 ID=mRNA_S-dermatodea_contig9986.17905.1|Name=mRNA_S-dermatodea_contig9986.17905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at S-dermatodea_contig9986:3840..4316- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGATTGCCTCCGGAGGAGGAAGTCGTCTGGCGAGAGAGCGTATCGC
TGCAACGTTGGGCTATGGCCCCTTCGCTCCTCCTGGAACAGAACTCTGCT
CGGTAGAGGTGATCCCTCCGCTAACCGTAATCGGTCTGGACATCGAATGT
CTCATGGACCCTGCAAGGAACGCTTTCCTCTACCCTAACGACGGGATCAT
CTGCGTGTCCATCACTGGCGTTGAGCCCTTCAGGCATGAGGACAAGGACG
TTAATGGTGTGTGCTTCTGCAAAGCAACCGTACCGATCGAGGAGGAGGAC
TGGGACGATAACCCTGGCGTTGCCGTCATCAGGTGTTCCACTGAGGTGGA
AATGACCAAGCGAGCAGTCGACTTCATCGTCCAGCAAGAACCCGACTTCG
TCGCGATCCACAACGGCTATCAGTTCGACCTCAAGCTCCTTGCCGTGCAC
TCCGTGCGTGACCCAGAGGTCGAACGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9986:3840..4316-

>mRNA_S-dermatodea_contig9986.17905.1 ID=mRNA_S-dermatodea_contig9986.17905.1|Name=mRNA_S-dermatodea_contig9986.17905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at S-dermatodea_contig9986:3840..4316- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCTGATTGCCTCCGGAGGAGGAAGTCGTCTGGCGAGAGAGCGTATCGC
TGCAACGTTGGGCTATGGCCCCTTCGCTCCTCCTGGAACAGAACTCTGCT
CGGTAGAGGTGATCCCTCCGCTAACCGTAATCGGTCTGGACATCGAATGT
CTCATGGACCCTGCAAGGAACGCTTTCCTCTACCCTAACGACGGGATCAT
CTGCGTGTCCATCACTGGCGTTGAGCCCTTCAGGCATGAGGACAAGGACG
TTAATGGTGTGTGCTTCTGCAAAGCAACCGTACCGATCGAGGAGGAGGAC
TGGGACGATAACCCTGGCGTTGCCGTCATCAGGTGTTCCACTGAGGTGGA
AATGACCAAGCGAGCAGTCGACTTCATCGTCCAGCAAGAACCCGACTTCG
TCGCGATCCACAACGGCTATCAGTTCGACCTCAAGCTCCTTGCCGTGCAC
TCCGTGCGTGACCCAGAGGTCGAACGCCCGCTGATTGCCTCCGGAGGAGG
AAGTCGTCTGGCGAGAGAGCGTATCGCTGCAACGTTGGGCTATGGCCCCT
TCGCTCCTCCTGGAACAGAACTCTGCTCGGTAGAGGTGATCCCTCCGCTA
ACCGTAATCGGTCTGGACATCGAATGTCTCATGGACCCTGCAAGGAACGC
TTTCCTCTACCCTAACGACGGGATCATCTGCGTGTCCATCACTGGCGTTG
AGCCCTTCAGGCATGAGGACAAGGACGTTAATGGTGTGTGCTTCTGCAAA
GCAACCGTACCGATCGAGGAGGAGGACTGGGACGATAACCCTGGCGTTGC
CGTCATCAGGTGTTCCACTGAGGTGGAAATGACCAAGCGAGCAGTCGACT
TCATCGTCCAGCAAGAACCCGACTTCGTCGCGATCCACAACGGCTATCAG
TTCGACCTCAAGCTCCTTGCCGTGCACTCCGTGCGTGACCCAGAGGTCGA
ACGC
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