mRNA_S-dermatodea_contig995.17876.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig995.17876.1
Unique NamemRNA_S-dermatodea_contig995.17876.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig995.17876.1 vs. uniprot
Match: D7FNH4_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH4_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 4.110e-102
Identity = 164/262 (62.60%), Postives = 192/262 (73.28%), Query Frame = 1 
Query:  154 AGASTDPGVPSRFKRVLDKATGRHYYYDKETRKTFWKLTEGPGGVPLNVSHEDPRKRRKTYGHPPTDVEAIGYNQGALVWWKVDGREQGKDG---TGG--KAVGHGLAGGGGXXKMYGMGGTDGGEGEDDGSDPAT-IGYVVHRYRLDGREWHQKGSTSVDGVKVVSTRVNGLQNGLVYRFTVASKTVKGDSAESKPSVAVRPNEPLPEGWKENFNAITGKSVYKNLKAGHTSAERPDINPYFVETELFLRFTPEEAEALSK 921
            AG   +   PSRFKRVLDKATG+HYYYDKET++TFW L + P  +  N+  EDPRKRRKTYG PPT VEA+  NQGA+VWWK+    + ++G   TGG  KA      GG G     G        G+++   P   IG+VV+RYRLDGREWH+KG+TSVD  K VST V  L NGLVYRFTVAS+TV+GDSAES+PSVAVRPNEPLPEGWKE FNA TGKSVY N+K G TS+ERP+ NPYFVET+LFLRFTPEE E LS+
Sbjct:   39 AGGEGEEAAPSRFKRVLDKATGKHYYYDKETKETFWTLADAPNSISPNLPPEDPRKRRKTYGLPPTHVEAVAQNQGAVVWWKLPSSPEEREGPQHTGGNTKATTTNTKGGNGRGGSGGRAVESSVAGDEEKRSPLVPIGFVVYRYRLDGREWHKKGATSVDDAKAVSTAVKALSNGLVYRFTVASRTVEGDSAESEPSVAVRPNEPLPEGWKEKFNATTGKSVYTNVKTGQTSSERPECNPYFVETDLFLRFTPEETETLSE 300
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BLAST of mRNA_S-dermatodea_contig995.17876.1 vs. uniprot
Match: A0A7S3JUG7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUG7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.630e-11
Identity = 59/228 (25.88%), Postives = 87/228 (38.16%), Query Frame = 1 
Query:  319 KRRKTYGHPPTDVEAIGYNQGALVWWKVDGREQGKDGTGGKAVGHGLAGGGGXXKMYGMGGTDGGEGEDDGSDPATIGYVVHRYR-LDGREWHQKGSTSVD---------------GVKVVSTR-----------VNGLQNGLVYRFTVASKTVKGDSAESKPSVAVRPNEPLPEGWKENFNAITGKSVYKNLKAGHTSAERPDINPYFVETELFLRFTPEEAEALSK 921
            + +K +  PP ++ AIG  + A V W +  RE G                                       P  +GY V R R +D   W  KGS  +D               G K+   +           V+ L +   YRF V +   +G S  SK S  +R + PLP  W E       +S Y N K   +S +RP+ +PYF+ T LF++F+  E   L +
Sbjct:  157 RAKKGFPEPPPEIIAIGLAEAAKVSWTIP-RENG---------------------------------------PPILGYTVERQRCIDNENWRDKGSIYIDSQAQIIADTEAAKAIGKKLAKRKNKITPPPTAVLVDQLADDAKYRFRVYAHNARGKSVASKWSNEIRVSRPLPPAWIEVIPKDGSRSYYYNAKTFESSWQRPESDPYFLPTNLFMQFSAMEISHLKE 344
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig995.17876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNH4_ECTSI4.110e-10262.60N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S3JUG7_9STRA8.630e-1125.88Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig995contigS-dermatodea_contig995:13443..16375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.6
Seed ortholog evalue1.2e-86
Seed eggNOG ortholog2880.D7FNH4
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0007275,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0016049,GO:0021700,GO:0022622,GO:0030154,GO:0032501,GO:0032502,GO:0040007,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0046872,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0050896,GO:0060560,GO:0071695,GO:0080147,GO:0090558,GO:0090627,GO:0099402,GO:1905392
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_005450.1
Exons5
Model size939
Cds size939
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig995.17876.1prot_S-dermatodea_contig995.17876.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig995 13443..16375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925439.397313-CDS-S-dermatodea_contig995:13442..135831622925439.397313-CDS-S-dermatodea_contig995:13442..13583Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 13443..13583 -
1694079934.4877782-CDS-S-dermatodea_contig995:13442..135831694079934.4877782-CDS-S-dermatodea_contig995:13442..13583Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 13443..13583 -
1622925439.412434-CDS-S-dermatodea_contig995:14176..143001622925439.412434-CDS-S-dermatodea_contig995:14176..14300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 14177..14300 -
1694079934.505237-CDS-S-dermatodea_contig995:14176..143001694079934.505237-CDS-S-dermatodea_contig995:14176..14300Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 14177..14300 -
1622925439.4235702-CDS-S-dermatodea_contig995:14635..149781622925439.4235702-CDS-S-dermatodea_contig995:14635..14978Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 14636..14978 -
1694079934.5160754-CDS-S-dermatodea_contig995:14635..149781694079934.5160754-CDS-S-dermatodea_contig995:14635..14978Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 14636..14978 -
1622925439.4335606-CDS-S-dermatodea_contig995:15401..156211622925439.4335606-CDS-S-dermatodea_contig995:15401..15621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 15402..15621 -
1694079934.526288-CDS-S-dermatodea_contig995:15401..156211694079934.526288-CDS-S-dermatodea_contig995:15401..15621Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 15402..15621 -
1622925439.447429-CDS-S-dermatodea_contig995:16264..163751622925439.447429-CDS-S-dermatodea_contig995:16264..16375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 16265..16375 -
1694079934.5357218-CDS-S-dermatodea_contig995:16264..163751694079934.5357218-CDS-S-dermatodea_contig995:16264..16375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig995 16265..16375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig995.17876.1

>prot_S-dermatodea_contig995.17876.1 ID=prot_S-dermatodea_contig995.17876.1|Name=mRNA_S-dermatodea_contig995.17876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=313bp
SPTGEVVDLPVSPSPIPDQLVSPLSASRGPSRKGSPASLDASHCADRPAH
AAGASTDPGVPSRFKRVLDKATGRHYYYDKETRKTFWKLTEGPGGVPLNV
SHEDPRKRRKTYGHPPTDVEAIGYNQGALVWWKVDGREQGKDGTGGKAVG
HGLAGGGGGGKMYGMGGTDGGEGEDDGSDPATIGYVVHRYRLDGREWHQK
GSTSVDGVKVVSTRVNGLQNGLVYRFTVASKTVKGDSAESKPSVAVRPNE
PLPEGWKENFNAITGKSVYKNLKAGHTSAERPDINPYFVETELFLRFTPE
EAEALSKARHRP*
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mRNA from alignment at S-dermatodea_contig995:13443..16375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig995.17876.1 ID=mRNA_S-dermatodea_contig995.17876.1|Name=mRNA_S-dermatodea_contig995.17876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2933bp|location=Sequence derived from alignment at S-dermatodea_contig995:13443..16375- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTCCAACAGGCGAGGTCGTAGACCTGCCGGTGTCGCCCTCTCCAATACC
AGACCAGCTCGTGAGTCCACTATCAGCTTCTCGTGGGCCCAGCAGGAAGG
GATCGCCGGCCGTAATTGCACAGGATTGCGGTGGAAGATCAGGTTTGGCG
TCGAGAGAGTCGAGAGACTTATAATAAGTAAACACTGCTGCTGCCGTCGT
TTTCCCGCGCACGTCGTGTACCAGGTCCTCGTGTACCAGTATGATACCTG
GTATATATTTTAATTCATTCAGAAAAAGAGGTCAACCAAAGTCAGGGAAC
GTTGGCGACGAGTCGTATTCAGTATGATATACAAGTATACAAGTACGCAA
AGCTAGGGCAGGTCGCCGACCGTCCACGTCGGGACACCTACACGTAAGTT
CGCATCCCTCCGAATCTGCCTGAAATAGAGCCAGGATCTGCTCTAACGTG
ACAGGAACACCATGCCGCCTCTGATCGACAAAATTTTCTATAATCTTCAC
GTGCCCTCTGCCCGCTAGTGGTGTCTGGGGCACATCGAGGCGCGCACAAA
TCCTGCGAAGACGCAAAAAATGCAAACAATGTGGTTGCACCAAAAAAGCC
CCTGCGTTTCAAAGAGTCTCGAGCTGTCCGGCACTGCCATACTGTGTTAA
CACTTGTGTAGATTCAAGTGTATACACAAAAGCACAAACGTACACAACGA
ATCGCCGGCACGACAATCGCCACCTATTTTGGCTGCGTGCCACCTGTATC
GCAGTCATTGGATGCGTCACATTGTGCCGATCGTCCTGCACACGCAGCAG
GTGCTTCTACCGATCCCGGGGTACCTTCACGCTTCAAACGTGTCTTGGAC
AAGGCCACCGGTCGGCACTACTACTACGACAAGGAGACGCGCAAAACCTT
CTGGAAACTTACCGAAGGACCCGGGGGTGTACCCCTCAACGTCAGCCACG
AAGACCCTCGCAAGCGGAGAAAAAGTAAGCACGATGTGGGGGGGGGGGAA
AAGTTAAAGGCGTTTGACGCTAAAGAGCGAAATGTTACAAGTAGAGGGTT
TGATGGACAGCGAGCAAAGCTGCCACCAACATCAGATAATACATCTGTGA
AATAGCCCCAAGGGAGAAGGTGCGACTTCGATTTGATCCGGCGACGGGCA
CGAGTCAATCGCATATTTTTTTAACCCTCCATCCAAGAAAACGTTGACGC
AGCTACCGAAAATGGTATGGCTTGATGTGGGATAAATCTCGACTCTCCGC
CGGACAACGCTTATCCCCCGGTAACCCCATCACCGTCAAGAATATTCCAG
TTAAGACTTCTCCAGTTTAACTGGCAATGTGCAGATCACCATGCAATTCA
CGTCCCTGCTTTTCAATTCAACTGATGGACGCAAAACCCGGAAACAGCTT
ACGGACATCCCCCGACCGACGTAGAAGCTATCGGGTACAACCAAGGAGCC
CTCGTCTGGTGGAAAGTCGACGGACGAGAGCAAGGGAAGGACGGCACCGG
TGGGAAGGCGGTGGGTCATGGGTTGGCGGGTGGTGGGGGCGGGGGCAAGA
TGTATGGGATGGGAGGAACGGACGGTGGCGAGGGCGAGGACGACGGCTCG
GACCCCGCAACGATCGGATACGTGGTCCACCGATACCGACTAGATGGGCG
CGAGTGGCACCAGAAAGGCTCTACGAGCGTGGACGGAGTGAAGGTTGTGT
CCACCCGGGTGAATGGGCTGCAGAATGGGCTCGTGTACAGGTGACGCCTC
TTTAGGGCATGATAGTTGAGGCATAAATATGGCCACAAATGCAGAGCAAG
CATTTATTGTATCTCTACTCTTACACCTTTCGTACATGCATAGTCATCCG
ACTAACTGAGTGATCGACCTTCGGAACCGCTGTCGCATGCTTCAAGCGCG
CGCGATTTTCCTAGTGGCGGTACCCCCAAAACATTGTACCTGATACAACC
GCACAAACCCACAAATATAATCTAACGACGGCTGTTTTTATCATTCAAAC
TTTCGCCATGCTGCGTGGGTCATCGCTTAGTGTCTTCCATTGCACACGCA
CACGACTCCCGACCGGTCCGATCAGGTTTACAGTTGCCTCCAAGACGGTG
AAAGGCGACAGCGCGGAGAGCAAGCCCTCGGTTGCCGTGCGCCCGAACGA
ACCATTGCCAGAAGGTTGGAAAGAAAACTTCAACGCCATCACTGGCAAGG
TGTGCCTTATGTCTTCATGTTTCGTTTCCATACGCCCGGGATCGTTGCCG
GTTGCAGAGTTCTTACAGCCGTTGTTTGGAAGGGGTGAAAAAAGAAGTGG
GGACGAAAGCGAAGCGGAGGAGAACCTACATTTTGCATTTTTCCCGACGC
ACAGCGTCCCCCGGGTACAAGAGTATTCGCGCGTGCGGAGGGACCTCACA
AACCGCCCCACGCAACAAATCTCCATTCTTAACGGCTGAGGGAGGGAGGA
AGGAAGGAGGTATTGCTTGGCAGTCGAATGTTCGTGTGCAAACTTGCTGC
ATATCACGGGTGGGGCAGACATCGAAAATTTGGGTGTATGCCCCGAGAGG
AGCTTGTTGTAGTACCGACGTACGCGCGGAATTATCCTTGCCTCATGCCC
GCGGAATGTTAAACAAAACATCGACGCTGAACAAGACAGCAGGGTTCAAC
CCCCTTCTTCTATTCCACCGCTTCCAACTCCCACATTTTTTGCATCTCGA
CAGTCCGCTTATTACGCGACCAAAACAATTCGAGCCTTCACACCGCGTAT
ATACTGCTTACGCGACAACTCTATCTCTGTTCCGCGTTCAAGTCTGTGTA
CAAGAACCTCAAGGCAGGACACACGAGCGCAGAAAGGCCGGACATCAACC
CCTACTTCGTCGAGACAGAGCTGTTCCTCAGGTTTACTCCAGAGGAAGCC
GAAGCCCTTTCGAAGGCACGCCACCGGCCGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig995:13443..16375-

>mRNA_S-dermatodea_contig995.17876.1 ID=mRNA_S-dermatodea_contig995.17876.1|Name=mRNA_S-dermatodea_contig995.17876.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at S-dermatodea_contig995:13443..16375- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTCCAACAGGCGAGGTCGTAGACCTGCCGGTGTCGCCCTCTCCAATACC
AGACCAGCTCGTGAGTCCACTATCAGCTTCTCGTGGGCCCAGCAGGAAGG
GATCGCCGGCCTCTCCAACAGGCGAGGTCGTAGACCTGCCGGTGTCGCCC
TCTCCAATACCAGACCAGCTCGTGAGTCCACTATCAGCTTCTCGTGGGCC
CAGCAGGAAGGGATCGCCGGCCTCATTGGATGCGTCACATTGTGCCGATC
GTCCTGCACACGCAGCAGGTGCTTCTACCGATCCCGGGGTACCTTCACGC
TTCAAACGTGTCTTGGACAAGGCCACCGGTCGGCACTACTACTACGACAA
GGAGACGCGCAAAACCTTCTGGAAACTTACCGAAGGACCCGGGGGTGTAC
CCCTCAACGTCAGCCACGAAGACCCTCGCAAGCGGAGAAAAATCATTGGA
TGCGTCACATTGTGCCGATCGTCCTGCACACGCAGCAGGTGCTTCTACCG
ATCCCGGGGTACCTTCACGCTTCAAACGTGTCTTGGACAAGGCCACCGGT
CGGCACTACTACTACGACAAGGAGACGCGCAAAACCTTCTGGAAACTTAC
CGAAGGACCCGGGGGTGTACCCCTCAACGTCAGCCACGAAGACCCTCGCA
AGCGGAGAAAAACTTACGGACATCCCCCGACCGACGTAGAAGCTATCGGG
TACAACCAAGGAGCCCTCGTCTGGTGGAAAGTCGACGGACGAGAGCAAGG
GAAGGACGGCACCGGTGGGAAGGCGGTGGGTCATGGGTTGGCGGGTGGTG
GGGGCGGGGGCAAGATGTATGGGATGGGAGGAACGGACGGTGGCGAGGGC
GAGGACGACGGCTCGGACCCCGCAACGATCGGATACGTGGTCCACCGATA
CCGACTAGATGGGCGCGAGTGGCACCAGAAAGGCTCTACGAGCGTGGACG
GAGTGAAGGTTGTGTCCACCCGGGTGAATGGGCTGCAGAATGGGCTCGTG
TACAGCTTACGGACATCCCCCGACCGACGTAGAAGCTATCGGGTACAACC
AAGGAGCCCTCGTCTGGTGGAAAGTCGACGGACGAGAGCAAGGGAAGGAC
GGCACCGGTGGGAAGGCGGTGGGTCATGGGTTGGCGGGTGGTGGGGGCGG
GGGCAAGATGTATGGGATGGGAGGAACGGACGGTGGCGAGGGCGAGGACG
ACGGCTCGGACCCCGCAACGATCGGATACGTGGTCCACCGATACCGACTA
GATGGGCGCGAGTGGCACCAGAAAGGCTCTACGAGCGTGGACGGAGTGAA
GGTTGTGTCCACCCGGGTGAATGGGCTGCAGAATGGGCTCGTGTACAGGT
TTACAGTTGCCTCCAAGACGGTGAAAGGCGACAGCGCGGAGAGCAAGCCC
TCGGTTGCCGTGCGCCCGAACGAACCATTGCCAGAAGGTTGGAAAGAAAA
CTTCAACGCCATCACTGGCAAGGTTTACAGTTGCCTCCAAGACGGTGAAA
GGCGACAGCGCGGAGAGCAAGCCCTCGGTTGCCGTGCGCCCGAACGAACC
ATTGCCAGAAGGTTGGAAAGAAAACTTCAACGCCATCACTGGCAAGTCTG
TGTACAAGAACCTCAAGGCAGGACACACGAGCGCAGAAAGGCCGGACATC
AACCCCTACTTCGTCGAGACAGAGCTGTTCCTCAGGTTTACTCCAGAGGA
AGCCGAAGCCCTTTCGAAGGCACGCCACCGGCCGTAGTCTGTGTACAAGA
ACCTCAAGGCAGGACACACGAGCGCAGAAAGGCCGGACATCAACCCCTAC
TTCGTCGAGACAGAGCTGTTCCTCAGGTTTACTCCAGAGGAAGCCGAAGC
CCTTTCGAAGGCACGCCACCGGCCGTAG
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