mRNA_S-dermatodea_contig9934.17862.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: T0R7Q0_SAPDV (Ribonuclease H n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7Q0_SAPDV) HSP 1 Score: 117 bits (294), Expect = 9.300e-30 Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 10 LPPTWVRSNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLAYS 348
LPP + +NNR EY AA+ AM+ + DP +T+ L+IF+DSMLL+ + T+W+ W R W K+ GE +KN DL+++L +R + W HV AHT ++ SVWNDKVDKLA+S
Sbjct: 201 LPPGAIATNNRAEYLAALEAMKRANVQDPAQTRPLYIFSDSMLLIQSMTEWLGGWKRNKWVKADGEPVKNADLLQLLDSTQGARCILWRHVKAHTHKKNWESVWNDKVDKLAWS 314
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: D0NEW7_PHYIT (Ribonuclease H n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NEW7_PHYIT) HSP 1 Score: 105 bits (261), Expect = 6.520e-25 Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DPE+++ L+IF+DSMLL+ + T+W+ +W + W KS G ++N DL+++L SR ++WTHV AHT D+ S WND D A
Sbjct: 203 TNNRAEYMAALEAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLVAEKGSRRIRWTHVKAHTRKQDWRSKWNDVADNAA 307
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A225VA59_9STRA (Ribonuclease (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA59_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.120e-24 Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DP+ ++ L+IF+DSMLL+ + T+W+ +W +K W KS G ++N DL+++L R ++W HV AHT +D+ S WND D A
Sbjct: 52 TNNRAEYMAALEAMKRANIEDPDGSRLLYIFSDSMLLIRSMTEWVGTWQKKNWVKSDGAPVQNRDLLELLMAEKGDRRIRWIHVKAHTGKSDWRSKWNDVADNAA 156
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: G4Z6L5_PHYSP (Ribonuclease H n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6L5_PHYSP) HSP 1 Score: 104 bits (260), Expect = 1.120e-24 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DPE ++ L IF+DSMLL+ + T+W+ +W + WKKS G ++N DL+++L R V+WTHV AHT D+ S WND D A
Sbjct: 215 TNNRAEYMAALEAMKRANIEDPEASRVLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMAEKGKRRVRWTHVKAHTGKKDWRSKWNDVADNAA 319
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: H3GUN7_PHYRM (Ribonuclease H n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUN7_PHYRM) HSP 1 Score: 104 bits (259), Expect = 2.950e-24 Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DPE ++ L IF+DSMLL+ + T+W+ +W + WKKS G ++N DL+++L +R ++WTHV AHT D+ S WND D A
Sbjct: 261 TNNRAEYMAALEAMKRANVEDPEGSRMLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMTEKGNRRIRWTHVKAHTGKKDWGSKWNDVADHAA 365
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A3M6VUM9_9STRA (Ribonuclease H n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUM9_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.480e-24 Identity = 44/105 (41.90%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DP+ ++ L+IF+DSMLL+ + T+W+ +W + W+KS G+ ++N DL+++L +R ++W HV AHT D+ S WND D A
Sbjct: 109 TNNRAEYMAALEAMKRANVEDPDGSRPLYIFSDSMLLIRSMTEWVGTWQKNNWRKSDGKPVRNHDLLELLVAEKGNRCIRWNHVKAHTGKKDWKSKWNDVADHAA 213
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6A3RGN8_9STRA (RNase H type-1 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RGN8_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.630e-24 Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DPE ++ L IF+DSMLL+ + T+W+ +W + WKK+ G+ ++N DL+++L +R V+WTHV AHT D+ S WND D A
Sbjct: 326 TNNRAEYMAALEAMKRANLEDPEGSRVLFIFSDSMLLIRSMTEWVQTWQKNNWKKADGQPVQNRDLLELLMVEKGNRRVRWTHVKAHTGKKDWRSKWNDVADNAA 430
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: V9FMU7_PHYPR (Ribonuclease H n=5 Tax=Phytophthora TaxID=4783 RepID=V9FMU7_PHYPR) HSP 1 Score: 102 bits (254), Expect = 8.410e-24 Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLAYS 348
+NNR EY AA+ AM+ + DPE ++ L IF+DSMLL+ + T+W+ +W +K W KS G ++N DL+++L SR ++W HV AHT D+ S WND D A S
Sbjct: 219 TNNRAEYMAALEAMKRANLEDPEGSRMLFIFSDSMLLIRSMTEWIGTWQKKNWLKSDGTPVQNRDLLELLVKEKGSRRIRWMHVKAHTGKQDWRSKWNDVADNAARS 325
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6G0RAG9_9STRA (RNase H type-1 domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RAG9_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.110e-23 Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY AA+ AM+ + DPE ++ L IF+DSMLL+ + T+W+ +W + WKK+ G+ ++N DL+++L +R V+WTHV AHT D+ S WND D A
Sbjct: 326 TNNRAEYMAALEAMKRANLEDPEGSRVLFIFSDSMLLIRSMTEWVQTWQKNNWKKADGQPVQNRDLLELLMVEKGNRRVRWTHVKAHTGKKDWRSKWNDVADNAA 430
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6C0KWW7_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KWW7_9ZZZZ) HSP 1 Score: 99.4 bits (246), Expect = 2.550e-23 Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
+NNR EY A A+E VD D K KT++I+TDS L++++ +KW+ W R GWKK G+ + N D++K + D R V + HV AHT D+ SVWND+ DK A
Sbjct: 118 TNNRAEYTAVQLALEQVDREDSMKRKTVYIYTDSQLIVDSMSKWITQWKRNGWKKKDGKPVLNQDILKRIDDLSQLRRVVYKHVMAHTGRDDWESVWNDRADKEA 222 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9934.17862.1 >prot_S-dermatodea_contig9934.17862.1 ID=prot_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp AYHLPPTWVRSNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTback to top mRNA from alignment at S-dermatodea_contig9934:6197..6544- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9934.17862.1 ID=mRNA_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig9934:6197..6544- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9934:6197..6544- >mRNA_S-dermatodea_contig9934.17862.1 ID=mRNA_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig9934:6197..6544- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |