mRNA_S-dermatodea_contig9934.17862.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9934.17862.1
Unique NamemRNA_S-dermatodea_contig9934.17862.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: T0R7Q0_SAPDV (Ribonuclease H n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7Q0_SAPDV)

HSP 1 Score: 117 bits (294), Expect = 9.300e-30
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 1
Query:   10 LPPTWVRSNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLAYS 348
            LPP  + +NNR EY AA+ AM+  +  DP +T+ L+IF+DSMLL+ + T+W+  W R  W K+ GE +KN DL+++L     +R + W HV AHT   ++ SVWNDKVDKLA+S
Sbjct:  201 LPPGAIATNNRAEYLAALEAMKRANVQDPAQTRPLYIFSDSMLLIQSMTEWLGGWKRNKWVKADGEPVKNADLLQLLDSTQGARCILWRHVKAHTHKKNWESVWNDKVDKLAWS 314          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: D0NEW7_PHYIT (Ribonuclease H n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NEW7_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 6.520e-25
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DPE+++ L+IF+DSMLL+ + T+W+ +W +  W KS G  ++N DL+++L     SR ++WTHV AHT   D+ S WND  D  A
Sbjct:  203 TNNRAEYMAALEAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLVAEKGSRRIRWTHVKAHTRKQDWRSKWNDVADNAA 307          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A225VA59_9STRA (Ribonuclease (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA59_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.120e-24
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DP+ ++ L+IF+DSMLL+ + T+W+ +W +K W KS G  ++N DL+++L      R ++W HV AHT  +D+ S WND  D  A
Sbjct:   52 TNNRAEYMAALEAMKRANIEDPDGSRLLYIFSDSMLLIRSMTEWVGTWQKKNWVKSDGAPVQNRDLLELLMAEKGDRRIRWIHVKAHTGKSDWRSKWNDVADNAA 156          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: G4Z6L5_PHYSP (Ribonuclease H n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6L5_PHYSP)

HSP 1 Score: 104 bits (260), Expect = 1.120e-24
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKKS G  ++N DL+++L      R V+WTHV AHT   D+ S WND  D  A
Sbjct:  215 TNNRAEYMAALEAMKRANIEDPEASRVLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMAEKGKRRVRWTHVKAHTGKKDWRSKWNDVADNAA 319          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: H3GUN7_PHYRM (Ribonuclease H n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUN7_PHYRM)

HSP 1 Score: 104 bits (259), Expect = 2.950e-24
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKKS G  ++N DL+++L     +R ++WTHV AHT   D+ S WND  D  A
Sbjct:  261 TNNRAEYMAALEAMKRANVEDPEGSRMLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMTEKGNRRIRWTHVKAHTGKKDWGSKWNDVADHAA 365          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A3M6VUM9_9STRA (Ribonuclease H n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUM9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.480e-24
Identity = 44/105 (41.90%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DP+ ++ L+IF+DSMLL+ + T+W+ +W +  W+KS G+ ++N DL+++L     +R ++W HV AHT   D+ S WND  D  A
Sbjct:  109 TNNRAEYMAALEAMKRANVEDPDGSRPLYIFSDSMLLIRSMTEWVGTWQKNNWRKSDGKPVRNHDLLELLVAEKGNRCIRWNHVKAHTGKKDWKSKWNDVADHAA 213          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6A3RGN8_9STRA (RNase H type-1 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RGN8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.630e-24
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKK+ G+ ++N DL+++L     +R V+WTHV AHT   D+ S WND  D  A
Sbjct:  326 TNNRAEYMAALEAMKRANLEDPEGSRVLFIFSDSMLLIRSMTEWVQTWQKNNWKKADGQPVQNRDLLELLMVEKGNRRVRWTHVKAHTGKKDWRSKWNDVADNAA 430          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: V9FMU7_PHYPR (Ribonuclease H n=5 Tax=Phytophthora TaxID=4783 RepID=V9FMU7_PHYPR)

HSP 1 Score: 102 bits (254), Expect = 8.410e-24
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLAYS 348
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +K W KS G  ++N DL+++L     SR ++W HV AHT   D+ S WND  D  A S
Sbjct:  219 TNNRAEYMAALEAMKRANLEDPEGSRMLFIFSDSMLLIRSMTEWIGTWQKKNWLKSDGTPVQNRDLLELLVKEKGSRRIRWMHVKAHTGKQDWRSKWNDVADNAARS 325          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6G0RAG9_9STRA (RNase H type-1 domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RAG9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.110e-23
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKK+ G+ ++N DL+++L     +R V+WTHV AHT   D+ S WND  D  A
Sbjct:  326 TNNRAEYMAALEAMKRANLEDPEGSRVLFIFSDSMLLIRSMTEWVQTWQKNNWKKADGQPVQNRDLLELLMVEKGNRRVRWTHVKAHTGKKDWRSKWNDVADNAA 430          
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6C0KWW7_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KWW7_9ZZZZ)

HSP 1 Score: 99.4 bits (246), Expect = 2.550e-23
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   31 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 342
            +NNR EY A   A+E VD  D  K KT++I+TDS L++++ +KW+  W R GWKK  G+ + N D++K + D    R V + HV AHT   D+ SVWND+ DK A
Sbjct:  118 TNNRAEYTAVQLALEQVDREDSMKRKTVYIYTDSQLIVDSMSKWITQWKRNGWKKKDGKPVLNQDILKRIDDLSQLRRVVYKHVMAHTGRDDWESVWNDRADKEA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T0R7Q0_SAPDV9.300e-3048.25Ribonuclease H n=1 Tax=Saprolegnia diclina (strain... [more]
D0NEW7_PHYIT6.520e-2544.76Ribonuclease H n=2 Tax=Phytophthora infestans TaxI... [more]
A0A225VA59_9STRA1.120e-2442.86Ribonuclease (Fragment) n=1 Tax=Phytophthora megak... [more]
G4Z6L5_PHYSP1.120e-2445.71Ribonuclease H n=1 Tax=Phytophthora sojae (strain ... [more]
H3GUN7_PHYRM2.950e-2444.76Ribonuclease H n=1 Tax=Phytophthora ramorum TaxID=... [more]
A0A3M6VUM9_9STRA4.480e-2441.90Ribonuclease H n=1 Tax=Peronospora effusa TaxID=54... [more]
A0A6A3RGN8_9STRA5.630e-2444.76RNase H type-1 domain-containing protein n=4 Tax=P... [more]
V9FMU7_PHYPR8.410e-2444.86Ribonuclease H n=5 Tax=Phytophthora TaxID=4783 Rep... [more]
A0A6G0RAG9_9STRA1.110e-2344.76RNase H type-1 domain-containing protein n=4 Tax=P... [more]
A0A6C0KWW7_9ZZZZ2.550e-2345.71RNase H type-1 domain-containing protein n=1 Tax=v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9934contigS-dermatodea_contig9934:6197..6544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue5.5e-24
Seed eggNOG ortholog112098.XP_008618543.1
Preferred nameRNASEH1
KEGG rclassRC00408
KEGG koko:K01835,ko:K03469
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03030,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03030
KEGG ModuleM00549
GOsGO:0000002,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032042,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0042802,GO:0042803,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046983,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
EggNOG free text desc.RNA-DNA hybrid ribonuclease activity
EggNOG OGsCOG0328@1,KOG3752@2759
EC3.1.26.4,5.4.2.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925438.371648-CDS-S-dermatodea_contig9934:6196..65441622925438.371648-CDS-S-dermatodea_contig9934:6196..6544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9934 6197..6544 -
1694079933.7563503-CDS-S-dermatodea_contig9934:6196..65441694079933.7563503-CDS-S-dermatodea_contig9934:6196..6544Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9934 6197..6544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9934.17862.1prot_S-dermatodea_contig9934.17862.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9934 6197..6544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9934.17862.1

>prot_S-dermatodea_contig9934.17862.1 ID=prot_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
AYHLPPTWVRSNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNT
CTKWMHSWFRKGWKKSGGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGT
DFNSVWNDKVDKLAYS
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mRNA from alignment at S-dermatodea_contig9934:6197..6544-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9934.17862.1 ID=mRNA_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig9934:6197..6544- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTACCACCTCCCCCCTACCTGGGTACGAAGCAACAATCGATGCGAGTA CTACGCCGCCATCAGGGCGATGGAGTTGGTGGACGAGTACGACCCGGAGA AGACCAAGACTCTCCATATATTTACTGACTCAATGCTTTTATTGAACACA TGCACAAAATGGATGCATTCGTGGTTTAGGAAAGGTTGGAAGAAGTCTGG TGGGGAGATCAAGAACCTGGACCTGGTGAAGATGTTGTACGACCATTGTA ATAGTAGGACTGTCAAGTGGACACACGTACCCGCTCATACATCGGGGACC GATTTTAATTCTGTCTGGAACGACAAGGTCGATAAATTGGCGTATTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig9934:6197..6544-

>mRNA_S-dermatodea_contig9934.17862.1 ID=mRNA_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig9934:6197..6544- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTACCACCTCCCCCCTACCTGGGTACGAAGCAACAATCGATGCGAGTA
CTACGCCGCCATCAGGGCGATGGAGTTGGTGGACGAGTACGACCCGGAGA
AGACCAAGACTCTCCATATATTTACTGACTCAATGCTTTTATTGAACACA
TGCACAAAATGGATGCATTCGTGGTTTAGGAAAGGTTGGAAGAAGTCTGG
TGGGGAGATCAAGAACCTGGACCTGGTGAAGATGTTGTACGACCATTGTA
ATAGTAGGACTGTCAAGTGGACACACGTACCCGCTCATACATCGGGGACC
GATTTTAATTCTGTCTGGAACGACAAGGTCGATAAATTGGCGTATTCTGC
TTACCACCTCCCCCCTACCTGGGTACGAAGCAACAATCGATGCGAGTACT
ACGCCGCCATCAGGGCGATGGAGTTGGTGGACGAGTACGACCCGGAGAAG
ACCAAGACTCTCCATATATTTACTGACTCAATGCTTTTATTGAACACATG
CACAAAATGGATGCATTCGTGGTTTAGGAAAGGTTGGAAGAAGTCTGGTG
GGGAGATCAAGAACCTGGACCTGGTGAAGATGTTGTACGACCATTGTAAT
AGTAGGACTGTCAAGTGGACACACGTACCCGCTCATACATCGGGGACCGA
TTTTAATTCTGTCTGGAACGACAAGGTCGATAAATTGGCGTATTCT
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