prot_S-dermatodea_contig9934.17862.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig9934.17862.1
Unique Name	prot_S-dermatodea_contig9934.17862.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	116

Homology

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: T0R7Q0_SAPDV (Ribonuclease H n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R7Q0_SAPDV)

HSP 1 Score: 117 bits (294), Expect = 9.300e-30
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 0

Query:    4 LPPTWVRSNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLAYS 116
            LPP  + +NNR EY AA+ AM+  +  DP +T+ L+IF+DSMLL+ + T+W+  W R  W K+ GE +KN DL+++L     +R + W HV AHT   ++ SVWNDKVDKLA+S
Sbjct:  201 LPPGAIATNNRAEYLAALEAMKRANVQDPAQTRPLYIFSDSMLLIQSMTEWLGGWKRNKWVKADGEPVKNADLLQLLDSTQGARCILWRHVKAHTHKKNWESVWNDKVDKLAWS 314

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: D0NEW7_PHYIT (Ribonuclease H n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NEW7_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 6.520e-25
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DPE+++ L+IF+DSMLL+ + T+W+ +W +  W KS G  ++N DL+++L     SR ++WTHV AHT   D+ S WND  D  A
Sbjct:  203 TNNRAEYMAALEAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLVAEKGSRRIRWTHVKAHTRKQDWRSKWNDVADNAA 307

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A225VA59_9STRA (Ribonuclease (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA59_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.120e-24
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DP+ ++ L+IF+DSMLL+ + T+W+ +W +K W KS G  ++N DL+++L      R ++W HV AHT  +D+ S WND  D  A
Sbjct:   52 TNNRAEYMAALEAMKRANIEDPDGSRLLYIFSDSMLLIRSMTEWVGTWQKKNWVKSDGAPVQNRDLLELLMAEKGDRRIRWIHVKAHTGKSDWRSKWNDVADNAA 156

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: G4Z6L5_PHYSP (Ribonuclease H n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6L5_PHYSP)

HSP 1 Score: 104 bits (260), Expect = 1.120e-24
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKKS G  ++N DL+++L      R V+WTHV AHT   D+ S WND  D  A
Sbjct:  215 TNNRAEYMAALEAMKRANIEDPEASRVLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMAEKGKRRVRWTHVKAHTGKKDWRSKWNDVADNAA 319

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: H3GUN7_PHYRM (Ribonuclease H n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUN7_PHYRM)

HSP 1 Score: 104 bits (259), Expect = 2.950e-24
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKS-GGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKKS G  ++N DL+++L     +R ++WTHV AHT   D+ S WND  D  A
Sbjct:  261 TNNRAEYMAALEAMKRANVEDPEGSRMLFIFSDSMLLIRSMTEWVGTWQKNNWKKSDGASVQNRDLLELLMTEKGNRRIRWTHVKAHTGKKDWGSKWNDVADHAA 365

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A3M6VUM9_9STRA (Ribonuclease H n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VUM9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.480e-24
Identity = 44/105 (41.90%), Postives = 70/105 (66.67%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DP+ ++ L+IF+DSMLL+ + T+W+ +W +  W+KS G+ ++N DL+++L     +R ++W HV AHT   D+ S WND  D  A
Sbjct:  109 TNNRAEYMAALEAMKRANVEDPDGSRPLYIFSDSMLLIRSMTEWVGTWQKNNWRKSDGKPVRNHDLLELLVAEKGNRCIRWNHVKAHTGKKDWKSKWNDVADHAA 213

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6A3RGN8_9STRA (RNase H type-1 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RGN8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.630e-24
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKK+ G+ ++N DL+++L     +R V+WTHV AHT   D+ S WND  D  A
Sbjct:  326 TNNRAEYMAALEAMKRANLEDPEGSRVLFIFSDSMLLIRSMTEWVQTWQKNNWKKADGQPVQNRDLLELLMVEKGNRRVRWTHVKAHTGKKDWRSKWNDVADNAA 430

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: V9FMU7_PHYPR (Ribonuclease H n=5 Tax=Phytophthora TaxID=4783 RepID=V9FMU7_PHYPR)

HSP 1 Score: 102 bits (254), Expect = 8.410e-24
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLAYS 116
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +K W KS G  ++N DL+++L     SR ++W HV AHT   D+ S WND  D  A S
Sbjct:  219 TNNRAEYMAALEAMKRANLEDPEGSRMLFIFSDSMLLIRSMTEWIGTWQKKNWLKSDGTPVQNRDLLELLVKEKGSRRIRWMHVKAHTGKQDWRSKWNDVADNAARS 325

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6G0RAG9_9STRA (RNase H type-1 domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RAG9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.110e-23
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY AA+ AM+  +  DPE ++ L IF+DSMLL+ + T+W+ +W +  WKK+ G+ ++N DL+++L     +R V+WTHV AHT   D+ S WND  D  A
Sbjct:  326 TNNRAEYMAALEAMKRANLEDPEGSRVLFIFSDSMLLIRSMTEWVQTWQKNNWKKADGQPVQNRDLLELLMVEKGNRRVRWTHVKAHTGKKDWRSKWNDVADNAA 430

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BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Match: A0A6C0KWW7_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KWW7_9ZZZZ)

HSP 1 Score: 99.4 bits (246), Expect = 2.550e-23
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 0

Query:   11 SNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNTCTKWMHSWFRKGWKKSGGE-IKNLDLVKMLYDHCNSRTVKWTHVPAHTSGTDFNSVWNDKVDKLA 114
            +NNR EY A   A+E VD  D  K KT++I+TDS L++++ +KW+  W R GWKK  G+ + N D++K + D    R V + HV AHT   D+ SVWND+ DK A
Sbjct:  118 TNNRAEYTAVQLALEQVDREDSMKRKTVYIYTDSQLIVDSMSKWITQWKRNGWKKKDGKPVLNQDILKRIDDLSQLRRVVYKHVMAHTGRDDWESVWNDRADKEA 222

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig9934.17862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
T0R7Q0_SAPDV	9.300e-30	48.25	Ribonuclease H n=1 Tax=Saprolegnia diclina (strain...	[more]
D0NEW7_PHYIT	6.520e-25	44.76	Ribonuclease H n=2 Tax=Phytophthora infestans TaxI...	[more]
A0A225VA59_9STRA	1.120e-24	42.86	Ribonuclease (Fragment) n=1 Tax=Phytophthora megak...	[more]
G4Z6L5_PHYSP	1.120e-24	45.71	Ribonuclease H n=1 Tax=Phytophthora sojae (strain ...	[more]
H3GUN7_PHYRM	2.950e-24	44.76	Ribonuclease H n=1 Tax=Phytophthora ramorum TaxID=...	[more]
A0A3M6VUM9_9STRA	4.480e-24	41.90	Ribonuclease H n=1 Tax=Peronospora effusa TaxID=54...	[more]
A0A6A3RGN8_9STRA	5.630e-24	44.76	RNase H type-1 domain-containing protein n=4 Tax=P...	[more]
V9FMU7_PHYPR	8.410e-24	44.86	Ribonuclease H n=5 Tax=Phytophthora TaxID=4783 Rep...	[more]
A0A6G0RAG9_9STRA	1.110e-23	44.76	RNase H type-1 domain-containing protein n=4 Tax=P...	[more]
A0A6C0KWW7_9ZZZZ	2.550e-23	45.71	RNase H type-1 domain-containing protein n=1 Tax=v...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..116 e-value: 3.1E-29 score: 103.8
IPR002156	Ribonuclease H domain	PFAM	PF00075	RNase_H	coord: 10..114 e-value: 3.2E-18 score: 66.3
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 1..116 score: 15.274
None	No IPR available	PANTHER	PTHR10642:SF21	RIBONUCLEASE HI	coord: 11..114
None	No IPR available	PANTHER	PTHR10642	RIBONUCLEASE H1	coord: 11..114
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 7..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig9934	contig	S-dermatodea_contig9934:6197..6544 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig9934.17862.1	mRNA_S-dermatodea_contig9934.17862.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig9934 6197..6544 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig9934.17862.1 ID=prot_S-dermatodea_contig9934.17862.1|Name=mRNA_S-dermatodea_contig9934.17862.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
AYHLPPTWVRSNNRCEYYAAIRAMELVDEYDPEKTKTLHIFTDSMLLLNT
CTKWMHSWFRKGWKKSGGEIKNLDLVKMLYDHCNSRTVKWTHVPAHTSGT
DFNSVWNDKVDKLAYS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR002156	RNaseH_domain
IPR012337	RNaseH-like_sf