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Homology
BLAST of mRNA_S-dermatodea_contig12936.1785.1 vs. uniprot
Match: D7G5A9_ECTSI (Vesicle docking protein P115 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A9_ECTSI) HSP 1 Score: 204 bits (520), Expect = 1.600e-55 Identity = 165/344 (47.97%), Postives = 205/344 (59.59%), Query Frame = 1
Query: 19 QTSCASNGGLRLDPNFRPLLEKASEEVRRRVISIFTHGGGHVAGGDAAKA----------------------SPDPGKGSTGALDAASEGGLASMVEVQEREICRLREELSEAVSRLPRGGE----ITALEESLGDQVKELEETVSANSKKIGKLGAQLSEALGQASAEKERGDLLMSELQGLSITMGSLERQLLDRETVCDGLRRELDAGDDRSERELELTRQVEEARAHASGAEDALEQLQRQSMADAXXXXXXXXXXXXXXXXXXEAKWSARVEEVQAALEEARGEAKSAAGALAVAD---TALHGTASAELANTVEKLGDARKALQELEEKGEELERALV 963
Q +NG LRLDP F LL +AS EVR+RVISI THG GG AA + GLASMVE+QE+EI LREELSEA+SR+PRGG ++ALE +L +QV++LE S+ +L +LS+AL Q AEKE LL SELQGL+++ SLERQLLDRE+VCDGLRR+LDAG+D S RE EL RQ+EEA + A AE+ALE Q+QS+A+A XXXXXXXXXX AKW A+VE++QAALEEAR +A +AD + T SA+L E L RK+ E E K E++ RAL
Sbjct: 756 QEGAGNNGELRLDPGFSSLLARASAEVRQRVISILTHGDASDGGGVAADSLETNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLASMVELQEKEIAGLREELSEALSRVPRGGGEGGGVSALEGALRNQVEQLEAAAVEQSEGFKRLQTELSDALAQVEAEKESLQLLTSELQGLAVSTSSLERQLLDRESVCDGLRRQLDAGEDSSAREGELARQLEEAHSRALKAEEALELSQKQSLANATADEXXXXXXXXXX-----AKWEAKVEQLQAALEEARRDAAXXXXXXXLADDDSSKAAATVSAQLVTATEDLESMRKSSVEREAKLEQIGRALA 1094
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 213.0 |
| Seed ortholog evalue | 2.1e-52 |
| Seed eggNOG ortholog | 2880.D7G5A9 |
| Preferred name | USO1 |
| KEGG ko | ko:K11675,ko:K20361,ko:K20478 |
| GOs | GO:0000139,GO:0001650,GO:0002009,GO:0002165,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007346,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010256,GO:0010389,GO:0010564,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022406,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044719,GO:0045056,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048211,GO:0048219,GO:0048278,GO:0048471,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051726,GO:0060429,GO:0060562,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090066,GO:0090114,GO:0090498,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140056,GO:1901987,GO:1901990,GO:1902749 |
| EggNOG free text desc. | Golgi vesicle docking |
| EggNOG OGs | KOG0946@1,KOG0946@2759 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03036,ko04131 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Model size | 973 |
| Cds size | 969 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12936.1785.1 >prot_S-dermatodea_contig12936.1785.1 ID=prot_S-dermatodea_contig12936.1785.1|Name=mRNA_S-dermatodea_contig12936.1785.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=323bp
GPDGGDQTSCASNGGLRLDPNFRPLLEKASEEVRRRVISIFTHGGGHVAG
GDAAKASPDPGKGSTGALDAASEGGLASMVEVQEREICRLREELSEAVSR
LPRGGEITALEESLGDQVKELEETVSANSKKIGKLGAQLSEALGQASAEK
ERGDLLMSELQGLSITMGSLERQLLDRETVCDGLRRELDAGDDRSERELE
LTRQVEEARAHASGAEDALEQLQRQSMADAAADEAAADEAAREATLEAEA
KWSARVEEVQAALEEARGEAKSAAGALAVADTALHGTASAELANTVEKLG
DARKALQELEEKGEELERALVKN back to topmRNA from alignment at S-dermatodea_contig12936:1695..4915- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig12936.1785.1 ID=mRNA_S-dermatodea_contig12936.1785.1|Name=mRNA_S-dermatodea_contig12936.1785.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3221bp|location=Sequence derived from alignment at S-dermatodea_contig12936:1695..4915- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCAGACGGCGGCGACCAAACATCCTGCGCGAGCAACGGAGGTGAAAG
CCGGGGTCGGTAGCACCAACTACGGGTATGCGGTAGATCGGGAAGCGCTT
GGGGGTGACGAGGCACTTCCAAACACGTGGGGTGCGGCTTTGGGAACAAA
CCGCCCGTGAAGCTTCACGCTTTTATCTGTTTGGACCGGGCAATCCTACG
GGAGGGGGGACTCATGTTTGGCATGCCTTAGGTGTTAGACCGTTGACCAC
GCGTCCTCGAGAGGACGAGCATTGTTCCCACAGGATCGAGATCGCCGATG
CCCAATCGTTCCTTCCTCCTCTGCCAAAGCGGGTACATTCGGGCCCGTTT
CGTTGAACGAACGAGCCCACCTTTTTGGAAGCGGCCAGCCATATTTACCT
TTTCCCTGTGTGACAGAATACTCCACTTTTTTCTCCGGCATAAATTCACT
TTTGCCGCGATCAGTCTTGGCCAACCGATATTTTTTTTTTATCGCGGTTT
TGGAGCATCGTGTAAAGCCCTGCCGCAGGATACCTCGCACGCGGTATGTA
TGTACTCGCGCGACCCCGTGCCCCGCCACCACACAATTGCCCCAATTTCG
CGGCTCTCTTGCCACGCCCTCGCATACCCTGCTTTTCAGGCCTCCGCCTC
GACCCGAACTTCCGCCCCCTGCTGGAAAAGGCGTCAGAGGAAGTCAGACG
ACGCGTCATCTCCATCTTCACGCACGGCGGCGGGCATGTCGCAGGAGGGG
ACGCAGCCAAAGCATCCCCTGATCCCGGGAAGGGCTCGACGGGCGCGTTG
GACGCGGCTAGCGAGGGGGGACTGGCGTCCATGGTGGAGGTGCAGGAGCG
GGAGATCTGTAGACTGAGGGAAGAGCTTTCCGAGGCCGTGAGCAGGTTGC
CGAGGGGCGGGGAGATTACTGCCTTGGAAGAATCGCTGGGCGATCAGGTA
CTTCTATTTGGTTGTCTTTTTCTTTTTCTTGGGAAAACGAGGCAAGCCGG
GAGCACAACCGCGGGGGTTGGTGATGAGGTTTTCGATCGGTGGCGGCCAG
GCGTCCGGTCGTTGTCGGGGAACGTTTACGGTTTAGTTGAGAGGGAGCCT
CGCCGGAGAGAGCGCCGCTTATTGTAGTATATTTCGGTGCTGAGTTTTCT
GCAGTCATCCTGACGTATTCCGTGTAACTTGTTGTGGCACAAACCTCCAA
CTCAGTTGATGGACGTGTTTTCGGATGGGTCTTGGATGCTCAGGTGAAGG
AGCTCGAGGAGACCGTTTCGGCGAATTCGAAGAAGATTGGAAAGCTCGGG
GCACAATTGAGCGAAGCCTTGGGGCAAGCGTCGGCTGAGAAAGAAAGGTA
TTGCACGCTTCGCAAATTTTGCGCCAGCTGTTCGAAGACGTCCTCCTCGT
CACTGCTGACTTTGTCGGGAAAGCGCACCAAAATGTTACAGCACCAACTC
TCACCGTTAGTACTACAATAGCGAGCTTTTCTCTTTCTTTTGTTTCCCTT
GGTTCATCCATCGTAGCGATAACGCGGCACCATCACGGCATCCTGATATT
AATGGATGACCTCCCGTGAAAACAGTAATATATAGCTCACAGCCACCGCC
GCGGGCGGGCATGGGTACGCTCGCCCCAATCCCTGCGCCGATGCAGAGCT
GTCGTAAATGTCAACGAGCGAAGTTATCACTCACTCTGTACCCGTCCGTT
CTCCTCCAACAAAACACAAATTCTTCCCGACCGCAACACCAGGGGGGACC
TTCTGATGTCAGAGCTGCAGGGGCTGTCGATCACCATGGGCTCCTTGGAG
CGGCAGCTGCTGGACCGCGAGACTGTCTGCGACGGCCTGAGGAGAGAGCT
CGACGCGGGGGACGATCGCTCCGAACGAGAACTCGAACTCACCAGACAGG
TACATAGTCGCACGTCTCCTTAGCTTAGCGCACACGCATGCCGGCTTGAG
ATCGCCAACAGCTTCGCCCACACTGCTTGTCGAAACCAGTCGGCGTTGGC
CCCTATTCTAGCCGAGTTTGACGCGCGAACAGTTCTCACCTTCTTCCTGG
GATCCTGCGGGTTTTCAGGTTGAAGAAGCTCGAGCACACGCCTCGGGCGC
GGAGGATGCCTTGGAGCAGTTGCAGCGGCAATCGATGGTGAGTTGCCCTG
CACGGCGGGGACGTCTCCCTGTCGTCCTCCTGTGCCAGCGGGCGTTGCCT
GTAAGCGTAGGAGCTCGATCCTTGGCGGCAATGTTGGGCCCTCCTAGCAC
AGGGAGGAGCGGGGGTATGCTACTCCGGTTGCGGCGCTCAAGTCACACTG
ACGCTGACACTGTTTTGTGGAACATATATTTGAGGGAATGTTGTCCCGTG
TGTCCCGAGAGCCTGGTTAATCCTCTCGGTGATGTCGAGATGGCGTCTTC
GAACGGCGGTGGGGTTTATCGGCCCCTTCTGTCGAAATCCGTCGTATTTT
CTTGCTGGTGATGCGCCGAGTTGTGTTATGTTGTGTTGTGCTGTGCTAAA
AGCTGTGCTGTGCTGTGCTGTGCGGTGCTGTGCGGTGCTGTGCTGTGCTA
TGCTGCAGGCCGACGCTGCGGCGGACGAGGCTGCAGCAGACGAGGCTGCG
AGAGAGGCGACTCTCGAAGCGGAAGCAAAGTGGTCGGCACGGGTAGAAGA
GGTGCAGGTATGCTGTTTGGCAGCCGTCGGCGCCACGTCCGCCCATAAGG
CTAGTTTACAGCAGTGGGACGGGAACCTGCTCTCGCGGTAATCGAGAGCC
GCCTTTAGGCCGTCTCAGCAGGGGCATTATGTACTGTGTAGGAACACTTG
GGGTCAACATGTCCTATGAAGTGGTAGCCCCCGCGCTCGGGGTGGAAGAG
ACGGTGCGCTGCCCCGACGACCGGGCGAAGACCGCACAGGTGGGCCACCG
AGAACGCGATGGAAACCCGCTAATCAACTCGAAGGAGGCGTTCTGCTTGT
CATCCCCTCTACCCCGGCGGTCACACACCAAATATGCCAAGGATGCCAAT
TTTTCAGCCTGTCCACATCGTGATCCACAGGCTGCCTTGGAAGAGGCTAG
AGGTGAGGCGAAGAGCGCCGCAGGAGCACTCGCGGTCGCCGATACGGCCC
TGCACGGGACTGCATCGGCAGAGCTAGCAAATACTGTGGAGAAGCTGGGG
GACGCCCGCAAGGCGCTGCAAGAACTCGAGGAAAAGGGGGAGGAGCTGGA
GCGGGCGCTGGTGAAAAATGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig12936:1695..4915- >mRNA_S-dermatodea_contig12936.1785.1 ID=mRNA_S-dermatodea_contig12936.1785.1|Name=mRNA_S-dermatodea_contig12936.1785.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at S-dermatodea_contig12936:1695..4915- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCCAGACGGCGGCGACCAAACATCCTGCGCGAGCAACGGAGGGCCCAG
ACGGCGGCGACCAAACATCCTGCGCGAGCAACGGAGGCCTCCGCCTCGAC
CCGAACTTCCGCCCCCTGCTGGAAAAGGCGTCAGAGGAAGTCAGACGACG
CGTCATCTCCATCTTCACGCACGGCGGCGGGCATGTCGCAGGAGGGGACG
CAGCCAAAGCATCCCCTGATCCCGGGAAGGGCTCGACGGGCGCGTTGGAC
GCGGCTAGCGAGGGGGGACTGGCGTCCATGGTGGAGGTGCAGGAGCGGGA
GATCTGTAGACTGAGGGAAGAGCTTTCCGAGGCCGTGAGCAGGTTGCCGA
GGGGCGGGGAGATTACTGCCTTGGAAGAATCGCTGGGCGATCAGGCCTCC
GCCTCGACCCGAACTTCCGCCCCCTGCTGGAAAAGGCGTCAGAGGAAGTC
AGACGACGCGTCATCTCCATCTTCACGCACGGCGGCGGGCATGTCGCAGG
AGGGGACGCAGCCAAAGCATCCCCTGATCCCGGGAAGGGCTCGACGGGCG
CGTTGGACGCGGCTAGCGAGGGGGGACTGGCGTCCATGGTGGAGGTGCAG
GAGCGGGAGATCTGTAGACTGAGGGAAGAGCTTTCCGAGGCCGTGAGCAG
GTTGCCGAGGGGCGGGGAGATTACTGCCTTGGAAGAATCGCTGGGCGATC
AGGTGAAGGAGCTCGAGGAGACCGTTTCGGCGAATTCGAAGAAGATTGGA
AAGCTCGGGGCACAATTGAGCGAAGCCTTGGGGCAAGCGTCGGCTGAGAA
AGAAAGGTGAAGGAGCTCGAGGAGACCGTTTCGGCGAATTCGAAGAAGAT
TGGAAAGCTCGGGGCACAATTGAGCGAAGCCTTGGGGCAAGCGTCGGCTG
AGAAAGAAAGGGGGGACCTTCTGATGTCAGAGCTGCAGGGGCTGTCGATC
ACCATGGGCTCCTTGGAGCGGCAGCTGCTGGACCGCGAGACTGTCTGCGA
CGGCCTGAGGAGAGAGCTCGACGCGGGGGACGATCGCTCCGAACGAGAAC
TCGAACTCACCAGACAGGGGGGACCTTCTGATGTCAGAGCTGCAGGGGCT
GTCGATCACCATGGGCTCCTTGGAGCGGCAGCTGCTGGACCGCGAGACTG
TCTGCGACGGCCTGAGGAGAGAGCTCGACGCGGGGGACGATCGCTCCGAA
CGAGAACTCGAACTCACCAGACAGGTTGAAGAAGCTCGAGCACACGCCTC
GGGCGCGGAGGATGCCTTGGAGCAGTTGCAGCGGCAATCGATGGTTGAAG
AAGCTCGAGCACACGCCTCGGGCGCGGAGGATGCCTTGGAGCAGTTGCAG
CGGCAATCGATGGCCGACGCTGCGGCGGACGAGGCTGCAGCAGACGAGGC
TGCGAGAGAGGCGACTCTCGAAGCGGAAGCAAAGTGGTCGGCACGGGTAG
AAGAGGTGCAGGCCGACGCTGCGGCGGACGAGGCTGCAGCAGACGAGGCT
GCGAGAGAGGCGACTCTCGAAGCGGAAGCAAAGTGGTCGGCACGGGTAGA
AGAGGTGCAGGCTGCCTTGGAAGAGGCTAGAGGTGAGGCGAAGAGCGCCG
CAGGAGCACTCGCGGTCGCCGATACGGCCCTGCACGGGACTGCATCGGCA
GAGCTAGCAAATACTGTGGAGAAGCTGGGGGACGCCCGCAAGGCGCTGCA
AGAACTCGAGGAAAAGGGGGAGGAGCTGGAGCGGGCGCTGGTGAAAAATG
CTGCCTTGGAAGAGGCTAGAGGTGAGGCGAAGAGCGCCGCAGGAGCACTC
GCGGTCGCCGATACGGCCCTGCACGGGACTGCATCGGCAGAGCTAGCAAA
TACTGTGGAGAAGCTGGGGGACGCCCGCAAGGCGCTGCAAGAACTCGAGG
AAAAGGGGGAGGAGCTGGAGCGGGCGCTGGTGAAAAAT back to top
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