mRNA_S-dermatodea_contig9873.17834.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9873.17834.1
Unique NamemRNA_S-dermatodea_contig9873.17834.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9873.17834.1 vs. uniprot
Match: A0A6H5L3N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.340e-7
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   13 RRSVHPQDFEPLAVIGEGHFGKVLLVRWKNG 105
            RR +  QDFEPL+VIGEGHFGKVLLVRW NG
Sbjct:    8 RRQIALQDFEPLSVIGEGHFGKVLLVRWNNG 38
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9873.17834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3N8_9PHAE2.340e-780.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9873contigS-dermatodea_contig9873:3668..7140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925436.2048707-CDS-S-dermatodea_contig9873:3667..37001622925436.2048707-CDS-S-dermatodea_contig9873:3667..3700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9873 3668..3700 +
1694079932.2869864-CDS-S-dermatodea_contig9873:3667..37001694079932.2869864-CDS-S-dermatodea_contig9873:3667..3700Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9873 3668..3700 +
1622925436.2200954-CDS-S-dermatodea_contig9873:6828..71401622925436.2200954-CDS-S-dermatodea_contig9873:6828..7140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9873 6829..7140 +
1694079932.2955463-CDS-S-dermatodea_contig9873:6828..71401694079932.2955463-CDS-S-dermatodea_contig9873:6828..7140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9873 6829..7140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9873.17834.1prot_S-dermatodea_contig9873.17834.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9873 3668..7140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9873.17834.1

>prot_S-dermatodea_contig9873.17834.1 ID=prot_S-dermatodea_contig9873.17834.1|Name=mRNA_S-dermatodea_contig9873.17834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
MNRARRSVHPQDFEPLAVIGEGHFGKVLLVRWKNGGGVSPPASASASSIS
SRKKSLSSTSAAPLPSRLTEEEGEDGDADNASGGGSRSSIRARSRSSSSR
SHSSSNSSFSRGTDN
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mRNA from alignment at S-dermatodea_contig9873:3668..7140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9873.17834.1 ID=mRNA_S-dermatodea_contig9873.17834.1|Name=mRNA_S-dermatodea_contig9873.17834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3473bp|location=Sequence derived from alignment at S-dermatodea_contig9873:3668..7140+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACCGCGCTCGGCGTAGCGTTCACCCTCAGGTACGCGCGCGCGTTCC
GTGTGTTGTGTTGTGTTGTGTTGTACCAGTATTTCTCTGGGATTTTTTTG
TGTGCGTGTGTTTGTGTTCCAAGTATTTGTGTGTTCTGTGTTTTTGGCTT
TTTTTGTGCCAAAAAATCTGCAAATATTTCACGTGTGCAGGAGCCGTGGT
GGTGTGGTGCGGTGTGTATCGTATTATTTCATATGCAGCTGGGCATGTTA
GTATAATACCTGTGTGTTTGATTTGGTTTTCATTGGTTTGATTTGATTTG
TACACGTATATATTGCATACTGTATTGCCAATCGACTTACTCCGCCCCGA
CTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAAGAACTAATCAGAAC
TCTACGTCTGTGTGTATGTTTACAAACAGCAGTAGCACTGGCTGCTGGGA
GCATATACCGTATATGGTGCAGTTGTCGGACAGTATGATAGCTGCAAGGT
GCTCCACTATTAATAGCCTAAAGGTGTCGCACGGCGGAATGTTCGCCCCG
AGGTTCCGTACCTCATGGTTGACATATGATAGAGAGCTCTCTACACTATA
CAAGTTATCTATTGTATTTGCTCTTTCTTTTCTTACTCCATCTGGTCAGC
AGTGGTATACACAAGTATGTGATAAAGACATCTATTACCATGTACCAATG
GTACTCAATTATTACCAGTATATTATATGACAGCAGTCTGGCAGCCCGCT
GCTCCTCCTTTATTGTGTGCTGAAGCTTTCTGCGGGGCACGGCGGCACAC
CACACTTGGTTGAGATAGCATGGAACAGAAGTCGCCAGAGGAATTTTCGA
TATTGCAAAGTATGTTGTACAAGTATATACTGTATAGAATTAAGCATCGC
ATGCATACTCCAATCGAGCATTTCCCCCGATGCGCCCATTCCAATAGTCG
CGTCGGGCCGCGTGAGATCACGATTCTACCCCAGGCAGAACAGAACGCAG
ATTCGAAAGGCCCCGAACGCCAACTGGTACAAATTACGAGTTTCATAGGG
CGGGCGTTTGTTGCCGCTTGCTTCGACGAAGCAGGGAATATTATATTTAC
TGCTGCTTGTGGCATCCTGGGCCGCTGCCGTAAAATATCATTGGATGTTT
TTGATGAGCTACTGCTACTGCTACTGCTACAGTAACTGCGCTTTGCTAAG
ATAGGTCTTTATGGTACAGTAATGGTATCGACGGTGTTGTGTCAGTTGGT
CCGGCCGTGTGGTACAGCACAGCACAGCAGTAGTATTAGTGTTATCGTGT
TATCGTGTGTGCAAGGAGGTGTTTTATGAATGCTTGGTATGCGTATGATA
TGTATCTTGGTATACAAGGGGGTTTATTCTTGCGAATATTTGATTGATAT
ATTGATTCATTTGCACACTTATACAGTAGTAGTAGCCCATCAGCGATCGA
TCGGCTTAGCCCGACCCGACTTCAACATACAGTGAGTAATACTAATGCTA
GAGTGTACCAGTAGTAGGTATGATATCTATACTCGTACTGCAAAAAGTGT
CCAAATCAATCAAGCAAACTGCTGCCAAGAGAGAAAGCTGCGCTTGTAGT
CTTGTGTAACACAGGTTGTTGGTTTTGTCTGTGTTTATAGAGCATACAAT
ATTACGTCAGATTTAGTGGGGGGTGGCGTACGCATCAGTTTCGTGACACC
GACATCACACATCATCAAAATCCATGGCAAACGTACGTGCATCATTCACC
CTCCCCCGCCCATGCCCCCGGCGTGAAGGAACGAATGAACGAACAAACGA
ATGAACCCAACGTAAACGTGAACCGTGAATGAAACACAAAATTAATACAG
TAGAACGTGCGTATGGGATCAATCGTTCGTTCGTTTCTCGTTTCGTTTCG
TTTCCGTTTCGAGGGAATGTTGGTTTATTGTTTATTGTTTACGTTTCTTC
CGACGGGTGCATGCATGCATGTATCTGCATCTGCATCTGCATCTGCATCC
GCATCAGAATGCATCCGGTGGCGATCGAATTTTATCCCCCCCGGGTATAG
TGTAGATGCGGATGCTGCTGTACACGAACTCCTCCCCCTAGCGTAGCGTA
GCGTAGCGTAGCGTAGCGTAGCATAGCTTAGCTTAGCTTGGCTCTACACC
GCGATGCTGTGGTACCTGTGGCGATTATTGGATAATAGATATTATGATAA
TGTGTTACATACGTGGTGGTCTCATGTGCCAGTATCGCATGTATGTATGT
GTGCACGAGCTGTTGCAAAGAAATTGACGTCCTAATTATTTCGTCACATA
CTTACAGTACAGTATAATACCAATTGCGATCGGAAAAATGGTTCCGTTTT
GACATGATCGTGATGTCTGTCTTCTTCAGGAGTGGTCGCGAGTTATTAGC
CCGCGCAGCGCGTCGGACGAACGAACGAGCAGTAGTCTATTAGAGCTCTA
TAGTCTTGGCAAGAGTCACAGCAGCAGGAGCAGCAAGCAGTAGCTCTCCC
ATACTTGTAGGGCTTGCTCGACAATCTGCAAACACACTGCCACCGATTTT
TGGTGATGGCGCTCGCGCTCGCCTGTCGCAGCTTCGACCATGTCCCCCCC
CCTCCCCCCCTCCCCCCCTCCCCCATCATTTTTTACTCGCTTGGCTCCTT
CGTGATCTGGCGCGATTTTCACCTCGCACTTGCAACTTGCAGCACGACAC
TCATACACCATGAAGTCATGATCTGGAAAATTCGGTCCGCGATGCTTGTG
GGCATAATATGTATGCAGGTCGTTCACAGCTCACAGCACGCGTGCTCGCC
CGACCCCCCATTGGACGCAGCCAGGGCGCGGTTGTCGGCTGTTCCGATCG
ATGCTCTGTCTCGGCTCGGGGTAATATTTTCCGCTGGGTTGACTTTCAAA
ACACGAATGACGATTACAGTATGATACTGCAACATTAGAGCTCTACTATA
ATACCTATATAATACTACAGTACGTACTAGTCAGTAGTGTTTCTGTTTTC
AAAACCCATGCACGGGAGTAGAACACATTACAAATAGTACACGTGTAGTA
TTAATAGTACAAAACCCTTTCCGGTCCCCTACCCTCTTGACACGCTGCCC
CCCCCCCCCCCCCCACCCCCTCTTTTTCCAAATGCCTGGCCGGAATGCTG
TACGCTCTCAGGACTTCGAGCCCCTGGCTGTTATCGGCGAGGGACACTTC
GGCAAGGTTCTCCTCGTGCGGTGGAAGAACGGGGGCGGTGTCTCGCCCCC
GGCCTCCGCCTCCGCTTCCTCCATCTCCTCCCGAAAAAAATCGCTGTCGT
CGACGTCAGCTGCTCCGCTACCTTCTCGCCTCACGGAAGAGGAGGGGGAA
GATGGCGACGCCGATAACGCTAGCGGCGGCGGCAGCAGGTCTAGCATCCG
CGCTCGGAGTCGCAGCAGCAGCAGCCGCAGCCACAGCAGCAGCAACAGCA
GTTTCAGCAGGGGCACAGATAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9873:3668..7140+

>mRNA_S-dermatodea_contig9873.17834.1 ID=mRNA_S-dermatodea_contig9873.17834.1|Name=mRNA_S-dermatodea_contig9873.17834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig9873:3668..7140+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACCGCGCTCGGCGTAGCGTTCACCCTCAGATGAACCGCGCTCGGCG
TAGCGTTCACCCTCAGGACTTCGAGCCCCTGGCTGTTATCGGCGAGGGAC
ACTTCGGCAAGGTTCTCCTCGTGCGGTGGAAGAACGGGGGCGGTGTCTCG
CCCCCGGCCTCCGCCTCCGCTTCCTCCATCTCCTCCCGAAAAAAATCGCT
GTCGTCGACGTCAGCTGCTCCGCTACCTTCTCGCCTCACGGAAGAGGAGG
GGGAAGATGGCGACGCCGATAACGCTAGCGGCGGCGGCAGCAGGTCTAGC
ATCCGCGCTCGGAGTCGCAGCAGCAGCAGCCGCAGCCACAGCAGCAGCAA
CAGCAGTTTCAGCAGGGGCACAGATAACGACTTCGAGCCCCTGGCTGTTA
TCGGCGAGGGACACTTCGGCAAGGTTCTCCTCGTGCGGTGGAAGAACGGG
GGCGGTGTCTCGCCCCCGGCCTCCGCCTCCGCTTCCTCCATCTCCTCCCG
AAAAAAATCGCTGTCGTCGACGTCAGCTGCTCCGCTACCTTCTCGCCTCA
CGGAAGAGGAGGGGGAAGATGGCGACGCCGATAACGCTAGCGGCGGCGGC
AGCAGGTCTAGCATCCGCGCTCGGAGTCGCAGCAGCAGCAGCCGCAGCCA
CAGCAGCAGCAACAGCAGTTTCAGCAGGGGCACAGATAAC
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