prot_S-dermatodea_contig9873.17834.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9873.17834.1
Unique Nameprot_S-dermatodea_contig9873.17834.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length115
Homology
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BLAST of mRNA_S-dermatodea_contig9873.17834.1 vs. uniprot
Match: A0A6H5L3N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.340e-7
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0 
Query:    5 RRSVHPQDFEPLAVIGEGHFGKVLLVRWKNG 35
            RR +  QDFEPL+VIGEGHFGKVLLVRW NG
Sbjct:    8 RRQIALQDFEPLSVIGEGHFGKVLLVRWNNG 38
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9873.17834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3N8_9PHAE2.340e-780.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.200.20coord: 1..39
e-value: 2.1E-8
score: 35.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9873contigS-dermatodea_contig9873:3668..7140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9873.17834.1mRNA_S-dermatodea_contig9873.17834.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9873 3668..7140 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9873.17834.1 ID=prot_S-dermatodea_contig9873.17834.1|Name=mRNA_S-dermatodea_contig9873.17834.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
MNRARRSVHPQDFEPLAVIGEGHFGKVLLVRWKNGGGVSPPASASASSIS
SRKKSLSSTSAAPLPSRLTEEEGEDGDADNASGGGSRSSIRARSRSSSSR
SHSSSNSSFSRGTDN
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