mRNA_S-dermatodea_contig97740.17757.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig97740.17757.1
Unique NamemRNA_S-dermatodea_contig97740.17757.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.390e-55
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            MSRSQRNDNFIDKTFTI+AD+ILK+FPA+KEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQAL NIAVIYHYQGVK SEKQN+D+AK
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASEKQNIDVAK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.750e-53
Identity = 116/133 (87.22%), Postives = 128/133 (96.24%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M+RSQ+NDNFIDKTFT++AD++LK+FPA+KEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRSXXXXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQAL NIAVIYHYQG+K SEKQN+DIAK
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASEKQNIDIAK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.010e-53
Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M RSQRNDNFIDKTFTI+AD++LK+ PA+K+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQGVK S+K+N++IAK
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASKKKNLEIAK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 171 bits (432), Expect = 6.580e-52
Identity = 110/133 (82.71%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M RSQRNDNFIDKTFT++AD++LK+FPA+KEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR   XXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQAL NIAVIYHYQG+K ++KQN+++A+
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATKKQNVEVAR 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.370e-51
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M R Q+NDNFIDKTFTIIAD++LK+FPA+K+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQG+K SE +N+++AK
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASEVENLEVAK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A2U9NLZ0_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Proboscia sp. TaxID=1923967 RepID=A0A2U9NLZ0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.230e-50
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            MSR QRNDNFIDKTF+I+AD++LKL PA+  EKQAFFYYRDGMSAQSEGEYAEALE+YYEALQLEEDP+DRS XXXXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQGVK S+KQN+++AK
Sbjct:    1 MSRGQRNDNFIDKTFSIVADILLKLLPASMREKQAFFYYRDGMSAQSEGEYAEALEDYYEALQLEEDPFDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNFNLPQALNNIAVIYHYQGVKASKKQNLEVAK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 9.100e-50
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M RSQRNDNFIDKTFT++AD++LK+FPA+K+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQG +  EKQN + +K
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIEKQNTETSK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 164 bits (415), Expect = 2.520e-49
Identity = 107/133 (80.45%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M RSQ+NDNFIDKTFT++AD+ILK+ P +KEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQA  NIAVIYHYQG+K +++Q ++++K
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQQQKLNMSK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1C9CH18_PALPL (Photosystem I assembly protein Ycf3 n=4 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1C9CH18_PALPL)

HSP 1 Score: 163 bits (412), Expect = 7.660e-49
Identity = 109/133 (81.95%), Postives = 118/133 (88.72%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            MSRSQ+NDNFIDKTFT++AD++LK+ P +KEEK+AF YYRDGMSAQSEGEYAEALENYYEAL LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXX LN  LPQAL NIAVIYHYQGVK SEK   DI+K
Sbjct:    1 MSRSQKNDNFIDKTFTVLADIVLKVLPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALGLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXELNTKLPQALNNIAVIYHYQGVKASEKNKKDISK 133          
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1C9CCZ3_9RHOD (Photosystem I assembly protein Ycf3 n=8 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCZ3_9RHOD)

HSP 1 Score: 162 bits (410), Expect = 1.360e-48
Identity = 105/133 (78.95%), Postives = 116/133 (87.22%), Query Frame = 1
Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 399
            M RSQRNDNFIDKTFT++AD++LK+ PA+KEEK+AF YYRDGMSAQ+EGEYAEALENYYEAL+LEEDPYDRS      XXXXXXXXXXXXXXXXXXXXXXLN  LPQAL NIAVIYHYQG+K S K N + AK
Sbjct:    1 MPRSQRNDNFIDKTFTVLADIVLKILPASKEEKEAFSYYRDGMSAQTEGEYAEALENYYEALRLEEDPYDRSYILYNIXXXXXXXXXXXXXXXXXXXXXXLNSKLPQALNNIAVIYHYQGIKASRKNNFETAK 133          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1V5_9PHAE1.390e-5590.23Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo... [more]
A0A7S6U9V8_9STRA1.750e-5387.22Photosystem I assembly protein Ycf3 n=1 Tax=Schizo... [more]
A0A023HBL3_9STRA3.010e-5386.47Photosystem I assembly protein Ycf3 n=10 Tax=Ochro... [more]
B2XT84_HETAK6.580e-5282.71Photosystem I assembly protein Ycf3 n=2 Tax=Hetero... [more]
A0A516ZA68_9STRA1.370e-5183.46Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo... [more]
A0A2U9NLZ0_9STRA1.230e-5085.71Photosystem I assembly protein Ycf3 n=1 Tax=Probos... [more]
J9QSV9_9STRA9.100e-5081.95Photosystem I assembly protein Ycf3 n=3 Tax=Pelago... [more]
A0A1Z1M4W4_OSMFI2.520e-4980.45Photosystem I assembly protein Ycf3 n=1 Tax=Osmund... [more]
A0A1C9CH18_PALPL7.660e-4981.95Photosystem I assembly protein Ycf3 n=4 Tax=Nemali... [more]
A0A1C9CCZ3_9RHOD1.360e-4878.95Photosystem I assembly protein Ycf3 n=8 Tax=Rhodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig97740contigS-dermatodea_contig97740:108..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2.9e-45
Seed eggNOG ortholog2880.D1J7B5
Preferred nameFKBPL
KEGG koko:K20097
GOsGO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009579,GO:0009628,GO:0009987,GO:0015979,GO:0016043,GO:0019684,GO:0022603,GO:0022607,GO:0031647,GO:0034622,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0048564,GO:0050789,GO:0050793,GO:0050821,GO:0050896,GO:0051239,GO:0060688,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:1901342,GO:1905330,GO:1905553,GO:2000026
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925430.5197232-CDS-S-dermatodea_contig97740:107..5061622925430.5197232-CDS-S-dermatodea_contig97740:107..506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97740 108..506 +
1694079928.4746041-CDS-S-dermatodea_contig97740:107..5061694079928.4746041-CDS-S-dermatodea_contig97740:107..506Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig97740 108..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig97740.17757.1prot_S-dermatodea_contig97740.17757.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig97740 108..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig97740.17757.1

>prot_S-dermatodea_contig97740.17757.1 ID=prot_S-dermatodea_contig97740.17757.1|Name=mRNA_S-dermatodea_contig97740.17757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIFSSNGDYLKALEYYHQALE
LNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK
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mRNA from alignment at S-dermatodea_contig97740:108..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig97740.17757.1 ID=mRNA_S-dermatodea_contig97740.17757.1|Name=mRNA_S-dermatodea_contig97740.17757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at S-dermatodea_contig97740:108..506+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTCGTTCACAAAGAAATGATAATTTTATAGATAAAACTTTTACAAT TATAGCTGATCTAATATTAAAACTTTTTCCTGCGAATAAAGAAGAAAAAC AAGCCTTTTTTTATTATAGGGATGGTATGTCAGCACAATCTGAGGGAGAA TATGCTGAAGCATTAGAAAACTATTACGAGGCCTTACAGCTTGAAGAAGA TCCATATGATCGAAGCTTTATTTTATATAATATTGGTCTAATTTTTTCTA GCAATGGTGATTATTTAAAAGCTTTAGAGTATTATCATCAAGCTTTAGAA TTAAATCCAAATTTACCGCAAGCATTAAAGAATATTGCTGTAATTTATCA TTACCAAGGTGTTAAAGATTCAGAAAAACAAAATATGGATATTGCAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig97740:108..506+

>mRNA_S-dermatodea_contig97740.17757.1 ID=mRNA_S-dermatodea_contig97740.17757.1|Name=mRNA_S-dermatodea_contig97740.17757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig97740:108..506+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGTCGTTCACAAAGAAATGATAATTTTATAGATAAAACTTTTACAAT
TATAGCTGATCTAATATTAAAACTTTTTCCTGCGAATAAAGAAGAAAAAC
AAGCCTTTTTTTATTATAGGGATGGTATGTCAGCACAATCTGAGGGAGAA
TATGCTGAAGCATTAGAAAACTATTACGAGGCCTTACAGCTTGAAGAAGA
TCCATATGATCGAAGCTTTATTTTATATAATATTGGTCTAATTTTTTCTA
GCAATGGTGATTATTTAAAAGCTTTAGAGTATTATCATCAAGCTTTAGAA
TTAAATCCAAATTTACCGCAAGCATTAAAGAATATTGCTGTAATTTATCA
TTACCAAGGTGTTAAAGATTCAGAAAAACAAAATATGGATATTGCAAAAA
TGAGTCGTTCACAAAGAAATGATAATTTTATAGATAAAACTTTTACAATT
ATAGCTGATCTAATATTAAAACTTTTTCCTGCGAATAAAGAAGAAAAACA
AGCCTTTTTTTATTATAGGGATGGTATGTCAGCACAATCTGAGGGAGAAT
ATGCTGAAGCATTAGAAAACTATTACGAGGCCTTACAGCTTGAAGAAGAT
CCATATGATCGAAGCTTTATTTTATATAATATTGGTCTAATTTTTTCTAG
CAATGGTGATTATTTAAAAGCTTTAGAGTATTATCATCAAGCTTTAGAAT
TAAATCCAAATTTACCGCAAGCATTAAAGAATATTGCTGTAATTTATCAT
TACCAAGGTGTTAAAGATTCAGAAAAACAAAATATGGATATTGCAAAA
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