prot_S-dermatodea_contig97740.17757.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig97740.17757.1
Unique Name	prot_S-dermatodea_contig97740.17757.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	133

Homology

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.390e-55
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            MSRSQRNDNFIDKTFTI+AD+ILK+FPA+KEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS XXXXXXXXXXXXXXXXXXXXXXXXXXX N NLPQAL NIAVIYHYQGVK SEKQN+D+AK
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNLPQALNNIAVIYHYQGVKASEKQNIDVAK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.750e-53
Identity = 116/133 (87.22%), Postives = 128/133 (96.24%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M+RSQ+NDNFIDKTFT++AD++LK+FPA+KEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRSXXXXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQAL NIAVIYHYQG+K SEKQN+DIAK
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXELNTNLPQALNNIAVIYHYQGIKASEKQNIDIAK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.010e-53
Identity = 115/133 (86.47%), Postives = 125/133 (93.98%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M RSQRNDNFIDKTFTI+AD++LK+ PA+K+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQGVK S+K+N++IAK
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNLNLPQALNNIAVIYHYQGVKASKKKNLEIAK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 171 bits (432), Expect = 6.580e-52
Identity = 110/133 (82.71%), Postives = 125/133 (93.98%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M RSQRNDNFIDKTFT++AD++LK+FPA+KEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR   XXXXXXXXXXXXXXXXXXXXXXXXX LN NLPQAL NIAVIYHYQG+K ++KQN+++A+
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDRGFIXXXXXXXXXXXXXXXXXXXXXXXXXALNSNLPQALNNIAVIYHYQGMKATKKQNVEVAR 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.370e-51
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M R Q+NDNFIDKTFTIIAD++LK+FPA+K+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQG+K SE +N+++AK
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGIKASEVENLEVAK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A2U9NLZ0_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Proboscia sp. TaxID=1923967 RepID=A0A2U9NLZ0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.230e-50
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            MSR QRNDNFIDKTF+I+AD++LKL PA+  EKQAFFYYRDGMSAQSEGEYAEALE+YYEALQLEEDP+DRS XXXXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQGVK S+KQN+++AK
Sbjct:    1 MSRGQRNDNFIDKTFSIVADILLKLLPASMREKQAFFYYRDGMSAQSEGEYAEALEDYYEALQLEEDPFDRSFXXXXXXXXXXXXXXXXXXXXXXXXXXXLNFNLPQALNNIAVIYHYQGVKASKKQNLEVAK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 9.100e-50
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M RSQRNDNFIDKTFT++AD++LK+FPA+K+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQAL NIAVIYHYQG +  EKQN + +K
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNSNLPQALNNIAVIYHYQGSQAIEKQNTETSK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 164 bits (415), Expect = 2.520e-49
Identity = 107/133 (80.45%), Postives = 122/133 (91.73%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M RSQ+NDNFIDKTFT++AD+ILK+ P +KEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXXXLN NLPQA  NIAVIYHYQG+K +++Q ++++K
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXXLNANLPQAFNNIAVIYHYQGIKAAQQQKLNMSK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1C9CH18_PALPL (Photosystem I assembly protein Ycf3 n=4 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1C9CH18_PALPL)

HSP 1 Score: 163 bits (412), Expect = 7.660e-49
Identity = 109/133 (81.95%), Postives = 118/133 (88.72%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            MSRSQ+NDNFIDKTFT++AD++LK+ P +KEEK+AF YYRDGMSAQSEGEYAEALENYYEAL LEEDPYDRS   XXXXXXXXXXXXXXXXXXXXXXXX LN  LPQAL NIAVIYHYQGVK SEK   DI+K
Sbjct:    1 MSRSQKNDNFIDKTFTVLADIVLKVLPTSKEEKEAFCYYRDGMSAQSEGEYAEALENYYEALGLEEDPYDRSYILXXXXXXXXXXXXXXXXXXXXXXXXELNTKLPQALNNIAVIYHYQGVKASEKNKKDISK 133

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BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Match: A0A1C9CCZ3_9RHOD (Photosystem I assembly protein Ycf3 n=8 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCZ3_9RHOD)

HSP 1 Score: 162 bits (410), Expect = 1.360e-48
Identity = 105/133 (78.95%), Postives = 116/133 (87.22%), Query Frame = 0

Query:    1 MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK 133
            M RSQRNDNFIDKTFT++AD++LK+ PA+KEEK+AF YYRDGMSAQ+EGEYAEALENYYEAL+LEEDPYDRS      XXXXXXXXXXXXXXXXXXXXXXLN  LPQAL NIAVIYHYQG+K S K N + AK
Sbjct:    1 MPRSQRNDNFIDKTFTVLADIVLKILPASKEEKEAFSYYRDGMSAQTEGEYAEALENYYEALRLEEDPYDRSYILYNIXXXXXXXXXXXXXXXXXXXXXXLNSKLPQALNNIAVIYHYQGIKASRKNNFETAK 133

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig97740.17757.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1V5_9PHAE	1.390e-55	90.23	Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo...	[more]
A0A7S6U9V8_9STRA	1.750e-53	87.22	Photosystem I assembly protein Ycf3 n=1 Tax=Schizo...	[more]
A0A023HBL3_9STRA	3.010e-53	86.47	Photosystem I assembly protein Ycf3 n=10 Tax=Ochro...	[more]
B2XT84_HETAK	6.580e-52	82.71	Photosystem I assembly protein Ycf3 n=2 Tax=Hetero...	[more]
A0A516ZA68_9STRA	1.370e-51	83.46	Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo...	[more]
A0A2U9NLZ0_9STRA	1.230e-50	85.71	Photosystem I assembly protein Ycf3 n=1 Tax=Probos...	[more]
J9QSV9_9STRA	9.100e-50	81.95	Photosystem I assembly protein Ycf3 n=3 Tax=Pelago...	[more]
A0A1Z1M4W4_OSMFI	2.520e-49	80.45	Photosystem I assembly protein Ycf3 n=1 Tax=Osmund...	[more]
A0A1C9CH18_PALPL	7.660e-49	81.95	Photosystem I assembly protein Ycf3 n=4 Tax=Nemali...	[more]
A0A1C9CCZ3_9RHOD	1.360e-48	78.95	Photosystem I assembly protein Ycf3 n=8 Tax=Rhodop...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 35..68 e-value: 0.012 score: 24.8 coord: 72..105 e-value: 1.9E-7 score: 40.8
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 35..68 score: 9.853
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 72..105 score: 13.069
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 74..104 e-value: 9.2E-11 score: 41.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 8..131 e-value: 2.8E-19 score: 71.7
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 22..120
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 1..130
None	No IPR available	PANTHER	PTHR26312:SF145	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3	coord: 1..130
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 35..133 score: 20.613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig97740	contig	S-dermatodea_contig97740:108..506 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig97740.17757.1	mRNA_S-dermatodea_contig97740.17757.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig97740 108..506 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig97740.17757.1 ID=prot_S-dermatodea_contig97740.17757.1|Name=mRNA_S-dermatodea_contig97740.17757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MSRSQRNDNFIDKTFTIIADLILKLFPANKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIFSSNGDYLKALEYYHQALE
LNPNLPQALKNIAVIYHYQGVKDSEKQNMDIAK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR001440	TPR_1
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom