mRNA_S-dermatodea_contig9601.17621.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9601.17621.1
Unique NamemRNA_S-dermatodea_contig9601.17621.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig9601.17621.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.090e-33
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    4 EVSLLDVATVPGLIQWPLVPITTGELVSCGMLQQVVRACPSMLNDVKKRGLAVSLTTLQRTEAAADKRDEKELQELLARQALEANPTGQNDVG 282
            EVSLLDVA+VPGL  WPLVPITTGELVSC MLQQVVRACPSMLN+VK+RGL V+L  ++R E AAD+RDE ELQELLARQA EA+P G+   G
Sbjct: 1176 EVSLLDVASVPGLGSWPLVPITTGELVSCSMLQQVVRACPSMLNEVKQRGLGVALAAMERAEKAADERDENELQELLARQAQEADPGGEEGDG 1268
[Close]
BLAST of mRNA_S-dermatodea_contig9601.17621.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.880e-21
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:    4 EVSLLDVATVPGLIQWPLVPITTGELVSCGMLQQVVRACPSMLNDVKKRGLAVSLTTLQRTE 189
            EVSLLDVA+VPGL  WPLVPITTGELVSC MLQQVVRACPSMLN+VKKRGL V+L  ++R E
Sbjct: 3135 EVSLLDVASVPGLGSWPLVPITTGELVSCSMLQQVVRACPSMLNEVKKRGLEVALAAVERAE 3196
[Close]
BLAST of mRNA_S-dermatodea_contig9601.17621.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.960e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 REVSLLDVATVPGLIQWPLVPITTGELVSCGMLQQVVRACPSMLN-DVKKR 150
            REV + D A V  L +WPLVPITTGEL SC +   + RACP  ++ D ++R
Sbjct: 4427 REVPMSDAALVAALHEWPLVPITTGELASCSLAPSIFRACPGAIHADTQRR 4477
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9601.17621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJG4_ECTSI3.090e-3375.27RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K688_9PHAE1.880e-2180.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YL62_9STRA7.960e-650.98RING-type domain-containing protein n=1 Tax=Tribon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9601contigS-dermatodea_contig9601:2712..4184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog2880.D8LJG4
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs28IDA@1,2S4Z3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size619
Cds size618
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9601.17621.1prot_S-dermatodea_contig9601.17621.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9601 2712..4183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925420.145942-CDS-S-dermatodea_contig9601:2711..28161622925420.145942-CDS-S-dermatodea_contig9601:2711..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 2712..2816 +
1694079920.9349208-CDS-S-dermatodea_contig9601:2711..28161694079920.9349208-CDS-S-dermatodea_contig9601:2711..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 2712..2816 +
1622925420.1573896-CDS-S-dermatodea_contig9601:3263..33711622925420.1573896-CDS-S-dermatodea_contig9601:3263..3371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 3264..3371 +
1694079920.9661005-CDS-S-dermatodea_contig9601:3263..33711694079920.9661005-CDS-S-dermatodea_contig9601:3263..3371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 3264..3371 +
1622925420.1700516-CDS-S-dermatodea_contig9601:3778..41831622925420.1700516-CDS-S-dermatodea_contig9601:3778..4183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 3779..4183 +
1694079920.9791005-CDS-S-dermatodea_contig9601:3778..41831694079920.9791005-CDS-S-dermatodea_contig9601:3778..4183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9601 3779..4183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9601.17621.1

>prot_S-dermatodea_contig9601.17621.1 ID=prot_S-dermatodea_contig9601.17621.1|Name=mRNA_S-dermatodea_contig9601.17621.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=206bp
REVSLLDVATVPGLIQWPLVPITTGELVSCGMLQQVVRACPSMLNDVKKR
GLAVSLTTLQRTEAAADKRDEKELQELLARQALEANPTGQNDVGENGQRW
PDDEDDEEREEDAEATAGAGSGNGHPRERDRESGGSGAENELQSVGDSSS
LNSSEYADAFDDGAAGPSARPQDASSSHNPSGIASVNAPASSVAVGGGPA
ASGLRP
back to top

mRNA from alignment at S-dermatodea_contig9601:2712..4184+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9601.17621.1 ID=mRNA_S-dermatodea_contig9601.17621.1|Name=mRNA_S-dermatodea_contig9601.17621.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1473bp|location=Sequence derived from alignment at S-dermatodea_contig9601:2712..4184+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGAGGTATCGCTGCTTGATGTGGCCACCGTGCCGGGCCTCATACAGTG
GCCGCTGGTGCCGATCACGACCGGAGAGCTTGTTTCTTGCGGCATGTTGC
AGCAGGTGGGAGTCATAGGATACGTCTTAGATGGCCCGTGTCACGCCGTA
TTACCGCGTCTGCGATCACGATCGTAGTGTTGCTTCTACTTGTACAAGTT
TTGGCAAAATATTGCTCGGGTGGCGGATTCCGAGGCCATCGGCTTGTTTC
GGACATCTAATTTTTGCCGGGCGGTACGTTGGTGACCTCAACGCCTTCTG
GCTGTGTCAGCGTAACCTCCTGGCGTGCAGGACCAGTACCTCTGTTTTTG
TTCCTTGCGCCCGTTGTTTTCGTTTCCGTTTGGTTTTGTTTTCTAGCGCT
CGTACCCTATTGGCCTACAGTTCCGTTCGCGGTGTAAGACGAGAAAAGTG
GTGTAATACAAACCAACAGTTGAATCAGGAAAGAGCGTCCTTCTGAGCGC
CACGTAAAGGTGCTTACCAAACCCTTCATTTGATGTCTTTCGTGTTTTGC
AGGTTGTCCGGGCGTGCCCGAGCATGCTAAACGACGTCAAGAAGAGGGGG
CTCGCCGTGTCGCTGACTACCCTGCAAAGGACGGAGGCGGCCGCGGACAA
ACGCGACGAGGTGGGTAAAGTCGTGCTTGAGACTTGGGTGGCGTAACTGA
AACGCTACGGGATATCTGATATCGAAGCTCCGAGAAGAGCCGCGATTTAC
ATATGTTGCTCCTCTGGTGTATCCGGCAATAGTCTCCCTCAAAGAGTCGC
ACAATCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCC
CCCCCCCCCCCTCCCCCCCCTTCCCCCACCCCCCCCTGACCCCCCCACAC
CTTCNNNNNNNNNNAATATTATCATAAACGATTGAAAACGGTGTAGCTAG
AGATGAAGCAGCCTCGAAAATATGACGAAAGGCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCACTCGACCCTAACAGACTTGTCGCCCCATTTCGTACCT
CTATCGCCGCTCTTCAGAAAGAACTCCAGGAACTGTTGGCCAGGCAGGCA
CTGGAAGCCAATCCTACCGGGCAGAATGACGTAGGCGAGAACGGCCAACG
GTGGCCTGACGACGAAGATGACGAAGAAAGGGAAGAAGACGCAGAGGCAA
CGGCTGGAGCTGGGTCAGGAAACGGTCACCCGCGCGAGCGCGACCGCGAA
TCTGGCGGTTCCGGCGCTGAGAACGAGCTCCAGTCGGTAGGAGATTCCTC
TTCTCTTAATTCCAGCGAATACGCCGACGCGTTTGATGACGGCGCGGCTG
GCCCATCCGCCCGCCCCCAAGACGCCTCTTCCTCCCATAACCCCAGCGGA
ATCGCTTCCGTCAACGCTCCAGCCTCGTCAGTCGCGGTGGGCGGTGGCCC
TGCCGCTTCAGGTCTTCGTCCAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9601:2712..4184+

>mRNA_S-dermatodea_contig9601.17621.1 ID=mRNA_S-dermatodea_contig9601.17621.1|Name=mRNA_S-dermatodea_contig9601.17621.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at S-dermatodea_contig9601:2712..4184+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAGAGGTATCGCTGCTTGATGTGGCCACCGTGCCGGGCCTCATACAGTG
GCCGCTGGTGCCGATCACGACCGGAGAGCTTGTTTCTTGCGGCATGTTGC
AGCAGAGAGAGGTATCGCTGCTTGATGTGGCCACCGTGCCGGGCCTCATA
CAGTGGCCGCTGGTGCCGATCACGACCGGAGAGCTTGTTTCTTGCGGCAT
GTTGCAGCAGGTTGTCCGGGCGTGCCCGAGCATGCTAAACGACGTCAAGA
AGAGGGGGCTCGCCGTGTCGCTGACTACCCTGCAAAGGACGGAGGCGGCC
GCGGACAAACGCGACGAGGTTGTCCGGGCGTGCCCGAGCATGCTAAACGA
CGTCAAGAAGAGGGGGCTCGCCGTGTCGCTGACTACCCTGCAAAGGACGG
AGGCGGCCGCGGACAAACGCGACGAGAAAGAACTCCAGGAACTGTTGGCC
AGGCAGGCACTGGAAGCCAATCCTACCGGGCAGAATGACGTAGGCGAGAA
CGGCCAACGGTGGCCTGACGACGAAGATGACGAAGAAAGGGAAGAAGACG
CAGAGGCAACGGCTGGAGCTGGGTCAGGAAACGGTCACCCGCGCGAGCGC
GACCGCGAATCTGGCGGTTCCGGCGCTGAGAACGAGCTCCAGTCGGTAGG
AGATTCCTCTTCTCTTAATTCCAGCGAATACGCCGACGCGTTTGATGACG
GCGCGGCTGGCCCATCCGCCCGCCCCCAAGACGCCTCTTCCTCCCATAAC
CCCAGCGGAATCGCTTCCGTCAACGCTCCAGCCTCGTCAGTCGCGGTGGG
CGGTGGCCCTGCCGCTTCAGGTCTTCGTCCAAAAGAACTCCAGGAACTGT
TGGCCAGGCAGGCACTGGAAGCCAATCCTACCGGGCAGAATGACGTAGGC
GAGAACGGCCAACGGTGGCCTGACGACGAAGATGACGAAGAAAGGGAAGA
AGACGCAGAGGCAACGGCTGGAGCTGGGTCAGGAAACGGTCACCCGCGCG
AGCGCGACCGCGAATCTGGCGGTTCCGGCGCTGAGAACGAGCTCCAGTCG
GTAGGAGATTCCTCTTCTCTTAATTCCAGCGAATACGCCGACGCGTTTGA
TGACGGCGCGGCTGGCCCATCCGCCCGCCCCCAAGACGCCTCTTCCTCCC
ATAACCCCAGCGGAATCGCTTCCGTCAACGCTCCAGCCTCGTCAGTCGCG
GTGGGCGGTGGCCCTGCCGCTTCAGGTCTTCGTCCA
back to top