mRNA_S-dermatodea_contig95949.17612.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6G0W3Y6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W3Y6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.200e-16 Identity = 59/159 (37.11%), Postives = 83/159 (52.20%), Query Frame = 1
Query: 16 ELKERLAALAAGITEAGCQRMSTDGQKELWRLVMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
E+K L + A + GC EL+ L YS FR +L +DPP M PL+V + A R K R S + +++ +H+R+LE A +YRNP + +AS + +RK KD +R+ D R VN+ E PMP LE + LA AT F LD
Sbjct: 729 EVKAVLDSKVAEAVDYGCGDEFASRLSELFVL----YSDVFRLSLGKDPPVSMPPLKVHLKEGAKPIRCKSRRYSLPQRQFMQKHVRELEKAGFIYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPVNAQTEQIVWPMPMLEVVIDHLAGATCFFLLD 883
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6A4YZG8_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZG8_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.000e-15 Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 112 VMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
+++ Y FR +L DPP M PL+V N A R K R S + E++ +H+++LEAA VYRNP + +AS + +RK KD +R+ D R +NS E A PMP LE + L+ A F LD
Sbjct: 481 LLDKYVDVFRLSLGRDPPVKMPPLKVHLANGARPIRCKARRYSLPQREFMQQHVKELEAAGFVYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPINSQTEQIAWPMPMLEVVVDHLSGAVCFFLLD 607
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6G0XGL8_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGL8_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 9.050e-15 Identity = 57/159 (35.85%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 16 ELKERLAALAAGITEAGCQRMSTDGQKELWRLVMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
E+K L + A + GC + L L++++ S FR +L +DPP M PL+V ++ A R K R S + +++ +H+R+LE A +YRNP + +AS + +RK KD +R+ D R VN+ E PMP LE + LA AT F LD
Sbjct: 145 EVKAVLDSKVAETVDYGC---GDEFASRLSELLVQN-SDVFRLSLGKDPPVSMPPLKVHLKDGAKPIRCKSRRYSLPQRQFMQKHVRELEEAGFIYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPVNAQTEQIVWPMPMLEVVIDHLAGATCFFLLD 299
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6G0WUQ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ0_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 9.610e-15 Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 1
Query: 34 AALAAGITEAGCQRMSTDGQKELWRLVMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRKKD--TYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
A L I E+ C+ +S + L R ++ + FR + D P +EPLRVR + A + R PA E+L +H+R+LEAA +VYRN +A +AS + KKD R+ D R +N+ EP PMPNL+ +L + A+ TLD
Sbjct: 591 AVLEDKIQESKCEGLSAAFLERL-RKILTTHVDVFRLEIGHDKPIAVEPLRVRIKLGAIPVKCGLRRYPPAHVEFLKKHVRELEAAGLVYRNNRATWASAPRIVPKKDHNDLRMTIDSRPINACTEPMPWPMPNLDAALTVLVGSRAYFTLD 741
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6A4ZFF1_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZFF1_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.690e-14 Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 112 VMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
+++ Y FR +L DPP M PL+V + A R K R S + +++ +H+++LEAA VYRNP + +AS + +RK KD +R+ D R +NS E A PMP LE + L+ A F LD
Sbjct: 385 LLDKYVDVFRLSLGRDPPVKMPPLKVHLADGARPIRCKARRYSLPQRDFMQQHLKELEAAGFVYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPINSQTEQIAWPMPMLEVVVDHLSGAACFFLLD 511
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6A4YZY1_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YZY1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.220e-14 Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 1
Query: 112 VMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
+++ Y FR +L DPP M PL+V + A R K R S + +++ +H+++LEAA VYRNP + +AS + +RK KD +R+ D R +NS E A PMP LE + L+ A F LD
Sbjct: 199 LLDKYVDVFRLSLGRDPPVKMPPLKVHLADGARPIRCKARRYSLPQRDFMQQHVKELEAAGFVYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPINSQTEQIAWPMPMLEVVVDHLSGAACFFLLD 325
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6A4ZAT1_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAT1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.070e-14 Identity = 53/146 (36.30%), Postives = 78/146 (53.42%), Query Frame = 1
Query: 52 ITEAGCQRMSTDGQKELWRLVMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRKK--DTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
I EA +S + EL R +++D++ FR +D P D+EPL+VR + A + R PA E+L +H+ +LEAA +VYRN +A +A+ + KK YR+ D R +N+ P PMPNL+ L F TLD
Sbjct: 19 IAEAIQLGLSPAHESEL-RRILDDHADVFRLEFGQDLPVDVEPLKVRLKEGAVPVKCALRRYPPAHMEYLKQHVEELEAAGLVYRNNRATWAAAPRIVAKKAPGEYRMTIDSRPINAWTIPMPWPMPNLDAAMATLVGMNVFFTLD 163
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6A4YZ10_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZ10_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.080e-13 Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 1
Query: 112 VMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
+++ Y FR +L DPP M L+V N A R K R S + E++ H+++LEAA VYRNP + +AS + +RK KD +R+ D R +NS E A PMP LE + L+ A F LD
Sbjct: 689 LLDKYVDVFRLSLGRDPPVKMPLLKVHFANGARLIRCKARRYSLPQREFMQHHVKELEAAGFVYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPINSQTEQIAWPMPMLEVVVDHLSGAVCFFLLD 815
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6G0WYM7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYM7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.830e-13 Identity = 53/158 (33.54%), Postives = 78/158 (49.37%), Query Frame = 1
Query: 16 ELKERLAALAAGITEAGCQRMSTDGQKELWRLVMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRKKDT--YRVVADFRAVNSLVEPAAMPMPNLEELGRLLAAATAFCTLD 480
E++E L A E G GQ + R ++ Y FR +DPP + PL+VR + A + R PA ++L +H+ +LEAA ++YRN +A +A+ + KK+ YR+ D R +N+ E PMPNLE L F TLD
Sbjct: 39 EVQEVLEQKVAEAVEQGLP----PGQVDELRRILRAYQDVFRLDFGKDPPVKVAPLKVRLKEGAVPVKVGLRRYPPAHMDYLRQHVAELEAAGLIYRNNRATWAAAPRIVPKKNPGEYRMTIDSRPINAWTEAMPWPMPNLEAAMATLVGMEVFFTLD 192
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Match: A0A6A4YTM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YTM1_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.330e-13 Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 112 VMEDYSGAFRRALIEDPPADMEPLRVR-RNAATHARAKPRPMSPAKAEWLAEHMRQLEAARMVYRNPQAAFASVAMAIRK---KDTYRVVADFRAVNSLVEPAAMPMPNLE 432
+++ Y FR +L DPP M PL+V + A R K R S + +++ +H+++LEAA VYRNP + +AS + +RK KD +R+ D R +NS E A PMP LE
Sbjct: 385 LLDKYVDVFRLSLGRDPPVKMPPLKVHLADGARPIRCKARRYSLHQRDFMQQHVKELEAAGFVYRNPASRWASAPLIVRKPHTKDEFRMTVDLRPINSQTEQIAWPMPMLE 495 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig95949.17612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig95949.17612.1 >prot_S-dermatodea_contig95949.17612.1 ID=prot_S-dermatodea_contig95949.17612.1|Name=mRNA_S-dermatodea_contig95949.17612.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=160bp MPPEVELKERLAALAAGITEAGCQRMSTDGQKELWRLVMEDYSGAFRRALback to top mRNA from alignment at S-dermatodea_contig95949:2..481- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig95949.17612.1 ID=mRNA_S-dermatodea_contig95949.17612.1|Name=mRNA_S-dermatodea_contig95949.17612.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig95949:2..481- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig95949:2..481- >mRNA_S-dermatodea_contig95949.17612.1 ID=mRNA_S-dermatodea_contig95949.17612.1|Name=mRNA_S-dermatodea_contig95949.17612.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at S-dermatodea_contig95949:2..481- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |