mRNA_S-dermatodea_contig9536.17557.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9536.17557.1
Unique NamemRNA_S-dermatodea_contig9536.17557.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 3.690e-138
Identity = 236/435 (54.25%), Postives = 288/435 (66.21%), Query Frame = 1
Query:   19 AMQAHTQQEFGASIQSGASTADRLDGKGWLTVTGRPNPRKPDAGFSFLVDGTS----MQNRDENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELLRTRASNSLLGTVAAPGQECEESRPSG-GTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASFGVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRADAISWERLHLPAFPYFQYLN-------------------KKQGRAAAGWVRILTSVLRDCYMKRLENGNLEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
            AMQAHTQ+EF AS + G S ADR  G GWL +T RPNPR  D+  S+ V G S    +  RD  EDGHNFK +PWSRH+V+FE   +  LVV C +G TD +A+L +      G  G+P RSE   TRVRSLGYVGSFLREYGSAAELLR   S+SLL  VAAPGQ+C     SG GTF+       LDTS VPLN +Q  AV++LTGGLD++VGPPGTGKSTTI+H+  SR+  + RVL+T  RNQAVDAVT+KV SFGVLVFGNE R+G  +KN T+ GRM ND EL+ WR+    W+K  + A A+SW RLHLP FP    L                    ++ GRAA  W   L  VL+  + KRL NG+L Q+  L Q++ L+K+ + LS G  R   +L RLE LTR+RIFT+TRVLICTVDSTERM+
Sbjct:   92 AMQAHTQKEFEASARQGVSNADRQGG-GWLVLTCRPNPRWQDSRLSYYVHGKSENGGLGTRDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACGEGVTDNEAFLAITP----GTDGIPVRSEHLHTRVRSLGYVGSFLREYGSAAELLRRDESDSLLNAVAAPGQQCTLPSSSGAGTFLPRGQVRTLDTSSVPLNATQKDAVLSLTGGLDLVVGPPGTGKSTTIYHINESRIRAEGRVLITSIRNQAVDAVTEKVDSFGVLVFGNEARLGPHSKNFTMAGRMANDAELLFWRDARETWTKHLKSAQAVSWSRLHLPNFPGVARLFALEQESLKSTGTGKKHHQLRRSGRAAGKWAFALKRVLKANFYKRLVNGSLAQRLMLHQLKALDKWVRLLSEGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTERMV 520          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A6H5JRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT8_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.400e-90
Identity = 194/440 (44.09%), Postives = 248/440 (56.36%), Query Frame = 1
Query:   19 AMQAHTQQEFGASIQSGASTADRLDGKGWLTVTGRPNPRKPDAGFSFLVDGTS----MQNRDENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELLRTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVT--CTRNQAVDAVTQKVASFGVL----VFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRADAISWERLHLPAFPYFQYLN-------------------KKQGRAAAGWVRILTSVLRDCYMKRLENGNLEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
            AMQAHTQ+EF AS + G S ADR  G GWL +T RPNPR  D+  S+ V G S    +  +D  EDGHNFK +PWSRH+V+FE   +  LVV C +G TD QA+L +      G  G+P  SE   TRVRSLGYVGSFLREYGSAAELLR   S+SLL  VAAPGQ    S    GTF+ P      + +R+ L+         +    +++            W         DA+   T    + +AV      + SF  L    VFGNE R+G  +KN T+ GRM ND EL+ WR+  + W+K  ++A A+SW RLHLP+FP    L                    ++ GR A  W   LT VL+  + KRLENG+  Q+  LRQ+  L+K+ + LS G  R   +L RLE LTR+RIFT+TRVLICTVDSTERM+
Sbjct:   92 AMQAHTQKEFEASARQGVSNADRQGG-GWLLLTCRPNPRWQDSCLSYYVHGKSENGGLDTQDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACVEGVTDNQAFLAIVP----GADGIPVLSEHLQTRVRSLGYVGSFLREYGSAAELLRRDESDSLLNAVAAPGQCTLPSSSGAGTFL-PRGQVFGNEARLGLHSKNFTMAGRMANDAELL-----------FWR--------DAQATWTKHLKKAKAVSWRRLHLPSFPGLRARGVFGNEARLGLHSKNFTMAGRMANDAELLFWRDARATWTKHLEKAKAVSWRRLHLPSFPGIARLLALEQESLRSTGTGEKHDKLRRSGRTAGKWAFALTCVLKANFYKRLENGSRAQRLMLRQLNALDKWVRLLSQGASRVASLLMRLEGLTRFRIFTETRVLICTVDSTERMV 505          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: E1ZLN5_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZLN5_CHLVA)

HSP 1 Score: 153 bits (387), Expect = 4.760e-37
Identity = 149/440 (33.86%), Postives = 203/440 (46.14%), Query Frame = 1
Query:   22 MQAHTQQEFGASIQSGASTADRLDGKGWLTVTGR-PNPRKPDAGFSFLVDG------TSMQNRDENEDGHNFKDEPWSRHVVQFEGKD---VPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAEL---LRTR----ASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF--GVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRADAISWERLHLPAFPYFQYLNKKQGRAAAGWVRILTSVLRDCYMKRLENGNL-EQKKTLRQIRVLEKYKQ----------FLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
            MQAHT  EF A+  +  ++A+           GR P P +    F ++ D       T  Q+ D +++G     EPW +H+VQ +  D   V  L     D   D    L    A G     V         ++RSLGY+GSFL +Y SA  L   LRTR    A+  +L   A P ++   S    GT  R       DT  VP+N  Q  AV  L GGL II GPPGTGKSTTI+H++ SRV P A+VLVTC+RNQAVDAV  K+A     +LVFG E R+GD AK +T+T R+   P +  W +++    +                        N       A  VR   +VL         +G   E+ +TLR  R+LE+ +Q             A  +    +L  ++A  +  I   TRV  CT+DST RM+
Sbjct:   86 MQAHTALEFQAAAAAALASAE-----------GRHPEPAQLWWNFGWVSDAKWRALRTRGQSLDFSDEG-----EPWVKHLVQVKETDSYHVARLARRDPDSGDDVLVLLPTVEAGGRAREVV---------QMRSLGYLGSFLLQYTSAQALRYQLRTRTLPPAAQHMLQLAADPTRQLSSSGQ--GTLRRGPVHLLTDT--VPINAGQRAAVEGLQGGLSIIHGPPGTGKSTTIFHIVESRVQPRAQVLVTCSRNQAVDAVVGKLAGVEGSLLVFGREERLGDKAKQYTLTARLARHPTVAAWLDLMRQLQELRD---------------------NTVPPGTLAARVRQAEAVLAAVVAAGASDGVAQEEMRTLR--RLLERLRQRDYSTLAADILQPAITRLLARVLPEVKAAAKREILASTRVYACTIDSTPRMV 473          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A2P6TVU4_CHLSO (DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVU4_CHLSO)

HSP 1 Score: 147 bits (372), Expect = 1.730e-35
Identity = 120/320 (37.50%), Postives = 160/320 (50.00%), Query Frame = 1
Query:   19 AMQAHTQQEFGASIQSGASTADRLDGK----GWLTVTGRPNPRKPDAGFSFLVDGTSMQNR--DENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYLVVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELL----------RTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF--GVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRAD 924
            AMQ+    EF ASI+     A+R   +    GW     + + R   +G S L+DG             G +F+ + W RH+VQ        L +M A  D + Q +++           +P      S  +R+LG+VG FL +Y +A  L           RTR    LL  V  P      SR +  T + P  A  L T  VP+N SQ  AV  L GGL+II GPPGTGKSTTI+H+I++ V PDA+VLVTCTRNQAVD+V  KVA    G+LVFGN  R+G+ A  HT+  R+   P +V WR  +    K     D
Sbjct:  114 AMQSTAALEFQASIRQALEQAEREQRRTGVSGWHEFVPQRSRR---SGGSLLLDGGESHGTWVFAGHTGVDFEQDSWGRHLVQVRETGSFHLAIM-AKQDDETQEHVMAL---------LPTVECSGSASMRTLGFVGPFLAQYEAAQGLRYSLHCSTLPDRTRQ---LLAAVVRP--STLYSRGAASTLL-PAGAR-LRTDEVPINASQRAAVEALRGGLNIIHGPPGTGKSTTIFHLIDAGVQPDAQVLVTCTRNQAVDSVVDKVARLEGGILVFGNAKRLGERAAQHTLEARVEAHPAVVVWRAGLDELGKYRMHPD 413          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A813JMW8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JMW8_POLGL)

HSP 1 Score: 109 bits (273), Expect = 5.740e-22
Identity = 100/315 (31.75%), Postives = 149/315 (47.30%), Query Frame = 1
Query:  340 GVGDRGVPARSEFTST-RVRSLGYVGSFLREYGSAAEL--LRTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVAS---FGVLVFGNETRVGDFAKNHTI---TGRMYNDPELVHWREVVSNWSKASQRA--DAISWERLHLPAFPYFQYLNKKQGRAAAGWVRILTSVLRDCYMKRLENGNLEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLICTVDSTERML 1251
            GVG   V  R     T +V+SLGYVGSFL E+ +  EL  ++ R     +  +  P  +       G    RP +A       VP+NPSQ  A+  L   L+ I GPPGTGKSTTI+HV+++RV    RVLVTC+RN AV+++ QK++    + + VFG   RVG+ A+ H +    G  +++ ++     +V+  S+A + A     +W R          YL K+   A A         LRD    RL++                    + SA         ++L+A     +  + RV +CT+ ST RML
Sbjct: 1262 GVGKVAVKLRGGAARTGQVKSLGYVGSFLAEFSAILELRGMQPRDMTGPMRAILEPKVDLP-----GSYANRPINAAA-----VPVNPSQRTAIEGLRHALEKIQGPPGTGKSTTIFHVLDARVPAGQRVLVTCSRNVAVESIAQKLSGLEDWPLCVFGPRDRVGETARRHLLDSQVGGQFDERKIGKVALLVAERSRALREAIDGKEAWCRGRRAEGLLLAYLRKRHAAAYA---------LRDL-CSRLDS--------------------YCSAATTSPDWCKTQLQAGKEV-VLARARVFLCTIASTSRML 1535          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A7S4NY20_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NY20_GUITH)

HSP 1 Score: 101 bits (252), Expect = 6.280e-22
Identity = 50/101 (49.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  577 RVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF---GVLVFGNETRVGDFAKNHTITGRMYNDPEL 870
            +VP+N  Q   VM+L   L+ + GPPGTGKSTTI+H+I+SR++P +RVLVTC+RN A++++ QK+ S     +LVFGN TR+G+ A  + +  R  NDP L
Sbjct:   23 KVPVNSCQKVVVMSLKHALEKVQGPPGTGKSTTIFHIISSRLSPSSRVLVTCSRNVAIESLVQKLESHFSSSMLVFGNVTRIGETACKYLLDARAENDPIL 123          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A813J659_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J659_POLGL)

HSP 1 Score: 108 bits (271), Expect = 1.050e-21
Identity = 82/233 (35.19%), Postives = 121/233 (51.93%), Query Frame = 1
Query:  340 GVGDRGVPARSEFTST-RVRSLGYVGSFLREYGSAAEL--LRTRASNSLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVAS---FGVLVFGNETRVGDFAKNHTI---TGRMYNDPELVHWREVVSNWSKASQRA--DAISWERLHLPAFPYFQYLNKKQGRAAA 1005
            GVG   V  R     T +V+SLGYVGSFL E+ +  EL  ++ R     +  +  P  +       G    RP +A       VP+NPSQ  A+  L   L+ I GPPGTGKSTTI+HV+++RV    RVLVTC+RN AV+++ QK++    + + VFG   RVG+ A+ H +    G  +++ ++     +V+  S+A + A     +W R          YL K+   A A
Sbjct: 1523 GVGKVAVKLRGGAARTGQVKSLGYVGSFLAEFSAILELRGMQPRDMTGPMRAILEPKVDLP-----GSYANRPINAAA-----VPVNPSQRTAIEGLRHALEKIQGPPGTGKSTTIFHVLDARVPAGQRVLVTCSRNVAVESIAQKLSGLEDWPLCVFGPRDRVGETARRHLLDSQVGGQFDERKIGKVALLVAERSRALREAIDGKEAWCRGRRAEGLLLAYLRKRHAAAYA 1745          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A7S4QCG3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QCG3_9DINO)

HSP 1 Score: 105 bits (263), Expect = 7.840e-21
Identity = 74/186 (39.78%), Postives = 102/186 (54.84%), Query Frame = 1
Query:  325 VAAAQ---GVGDRGVPARS-EFTSTRVRSLGYVGSFLREYGSAAELLR------TRASNSLLGT-VAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASFG---VLVFGNETRVGDFAKNHTI 840
            +A AQ   GVG   V  R     S  VRS+GY+GS+L E+ +  EL +      TR   ++L   V  PG   +          +P  A     S VP+NPSQ  A+  L   L+ I GPPGTGKSTTI+H++++RV P  RVLVTC+RN AV+++ QK+       + VFG   RVG+ A+ H +
Sbjct:   16 IATAQRLLGVGSIAVKLRGGSARSGSVRSIGYIGSYLSEFAAILELRKLPPNEVTRPMRAILQPKVDIPGDFAQ----------KPVRA-----SLVPVNPSQGAAINGLQHALEKIQGPPGTGKSTTIFHILDARVPPGQRVLVTCSRNVAVESIAQKLEGLDGWPLCVFGPRDRVGETARRHLL 186          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A812PVU5_9DINO (SETX protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PVU5_9DINO)

HSP 1 Score: 106 bits (264), Expect = 8.220e-21
Identity = 66/161 (40.99%), Postives = 97/161 (60.25%), Query Frame = 1
Query:  382 STRVRSLGYVGSFLREYGSAAELLRTRASNSLLGTVAAPGQECEESRPS-GGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVAS---FGVLVFGNETRVGDFAKNHTITGRM 852
            S +VRSLGY+GSFL EY +A EL R + ++     V  P +   E +    G F R      ++ + VP+NPSQ  A+  L   L+ I GPPGTGKSTTI+H++++RV    RVLVTC+RN AV+++ QK+     + + VFG   RVG  A+ + +  ++
Sbjct: 1768 SGQVRSLGYIGSFLAEYSAALELQRCKPTD-----VTNPMKAILEPKVDLPGDFARRP----VNAALVPVNPSQRAAIEGLKYALEKIQGPPGTGKSTTIFHILDARVPAGQRVLVTCSRNVAVESIAQKLEGLQGWPLCVFGPRDRVGGTARRYLLDSQV 1919          
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Match: A0A7S1JFX9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JFX9_9EUGL)

HSP 1 Score: 102 bits (254), Expect = 1.170e-20
Identity = 72/160 (45.00%), Postives = 87/160 (54.37%), Query Frame = 1
Query:  361 PARSEFTSTRVRSLGYVGSFLREYGSAAELLR-----TRASNSLL-GTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNLTGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKVASF--GVLVFGNETRVG 816
            P R    S RV SLGY+GSF+ EY  A ELL+     T    S+L   +  PG E E  R              LD   VP NPSQ  AV  L   L+ I GPPGTGKSTTI H+I SRV    RVLVTC+RN AV+++ QK+      + V GN+ R+G
Sbjct:  192 PLRDAGGSVRVYSLGYIGSFMVEYNCALELLKDCSHVTPLFRSILCPRLNLPG-EYENRR--------------LDLKLVPCNPSQKTAVEGLQYALEKIQGPPGTGKSTTIHHIIMSRVPRGKRVLVTCSRNVAVESIAQKLEGLVDDIFVSGNKDRLG 336          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9536.17557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY65_ECTSI3.690e-13854.25AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JRT8_9PHAE1.400e-9044.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
E1ZLN5_CHLVA4.760e-3733.86Expressed protein n=1 Tax=Chlorella variabilis Tax... [more]
A0A2P6TVU4_CHLSO1.730e-3537.50DNA helicase n=1 Tax=Chlorella sorokiniana TaxID=3... [more]
A0A813JMW8_POLGL5.740e-2231.75Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4NY20_GUITH6.280e-2249.50Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A813J659_POLGL1.050e-2135.19Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S4QCG3_9DINO7.840e-2139.78Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812PVU5_9DINO8.220e-2140.99SETX protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A7S1JFX9_9EUGL1.170e-2045.00Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9536contigS-dermatodea_contig9536:861..3093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score423.7
Seed ortholog evalue9.8e-116
Seed eggNOG ortholog2880.D7FY65
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1252
Cds size1230
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9536.17557.1prot_S-dermatodea_contig9536.17557.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9536 882..3093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.938898-UTR-S-dermatodea_contig9536:860..8811622925414.938898-UTR-S-dermatodea_contig9536:860..881Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9536 861..881 +
1694079918.098741-UTR-S-dermatodea_contig9536:860..8811694079918.098741-UTR-S-dermatodea_contig9536:860..881Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9536 861..881 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925414.952862-CDS-S-dermatodea_contig9536:881..15151622925414.952862-CDS-S-dermatodea_contig9536:881..1515Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9536 882..1515 +
1694079918.1119-CDS-S-dermatodea_contig9536:881..15151694079918.1119-CDS-S-dermatodea_contig9536:881..1515Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9536 882..1515 +
1622925414.9645624-CDS-S-dermatodea_contig9536:2073..22071622925414.9645624-CDS-S-dermatodea_contig9536:2073..2207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9536 2074..2207 +
1694079918.1240795-CDS-S-dermatodea_contig9536:2073..22071694079918.1240795-CDS-S-dermatodea_contig9536:2073..2207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9536 2074..2207 +
1622925414.974341-CDS-S-dermatodea_contig9536:2631..30931622925414.974341-CDS-S-dermatodea_contig9536:2631..3093Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9536 2632..3093 +
1694079918.1455066-CDS-S-dermatodea_contig9536:2631..30931694079918.1455066-CDS-S-dermatodea_contig9536:2631..3093Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9536 2632..3093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9536.17557.1

>prot_S-dermatodea_contig9536.17557.1 ID=prot_S-dermatodea_contig9536.17557.1|Name=mRNA_S-dermatodea_contig9536.17557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=410bp
MQAHTQQEFGASIQSGASTADRLDGKGWLTVTGRPNPRKPDAGFSFLVDG
TSMQNRDENEDGHNFKDEPWSRHVVQFEGKDVPCLVVMCADGDTDFQAYL
VVAAAQGVGDRGVPARSEFTSTRVRSLGYVGSFLREYGSAAELLRTRASN
SLLGTVAAPGQECEESRPSGGTFVRPTSAGCLDTSRVPLNPSQSQAVMNL
TGGLDIIVGPPGTGKSTTIWHVINSRVAPDARVLVTCTRNQAVDAVTQKV
ASFGVLVFGNETRVGDFAKNHTITGRMYNDPELVHWREVVSNWSKASQRA
DAISWERLHLPAFPYFQYLNKKQGRAAAGWVRILTSVLRDCYMKRLENGN
LEQKKTLRQIRVLEKYKQFLSAGHKRAKMILSRLEALTRYRIFTKTRVLI
CTVDSTERML
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mRNA from alignment at S-dermatodea_contig9536:861..3093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9536.17557.1 ID=mRNA_S-dermatodea_contig9536.17557.1|Name=mRNA_S-dermatodea_contig9536.17557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2233bp|location=Sequence derived from alignment at S-dermatodea_contig9536:861..3093+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTCTCGCCCATCTCAGGCTATGCAAGCCCACACGCAACAGGAGTTTGG AGCCTCCATTCAATCAGGCGCCAGCACGGCTGATCGCCTCGACGGGAAGG GATGGCTAACCGTGACCGGTCGGCCGAACCCCCGAAAGCCTGACGCTGGT TTTTCCTTCCTGGTCGACGGAACGTCCATGCAGAACCGCGACGAGAACGA AGATGGCCACAACTTCAAGGACGAGCCGTGGTCACGTCACGTGGTCCAGT TCGAAGGCAAGGATGTCCCATGCTTGGTGGTCATGTGCGCAGATGGTGAC ACCGACTTCCAAGCCTACCTCGTGGTTGCTGCGGCTCAAGGAGTTGGGGA CCGTGGAGTTCCTGCTCGTTCAGAGTTCACGAGCACGCGCGTGCGCTCTC TTGGGTACGTTGGGTCTTTTCTACGCGAGTATGGGAGCGCGGCGGAGCTC CTTCGCACCCGTGCCAGCAACAGCTTGCTCGGCACGGTCGCTGCCCCTGG CCAGGAGTGCGAAGAGTCCCGACCATCCGGGGGGACGTTTGTGCGACCGA CGAGCGCGGGATGTTTAGATACGTCGCGGGTCCCTCTTAATCCAAGCCAA AGTCAAGCTGTCATGAACCTCACTGGTGGTCTGGACATTATCGTGGGACC CCCTGGTAAGACTTCAACGTGTCTGCTTAGGGGTAGTCGCACTCCGAGTC CGTCCATTAGAGGCCGCCTGGTGTGAGAGTATGTTTCATAGCATCCCGAT AGTATTTCCCGTTGATTCATATACGATATTCTCGTTGACGCCCACCCTCT GCTGTTTGTGAATTATTGCCGTCTTTAAAGTGGAAGCTCATCAAGTAGAG AGTAGGGGGGGGGGGGGTAGGAAAATCGGGTTTTGTCTGTTGCCCGGGAT TTGGAAGGCGTTTTCCTATGTGCTGTGCTCGCGCCTGATTGGCCAGCCCA TCTCAGATCCAGTTCCTCCGAGTTTACCAGGTTCCACCATTCGGATTGAA AAATGTTATTATGGCTGGCCGGCCAACAACTCCTACCCCCCCCAGTATTT GGAGCGATCATAGTTCAGATAGACATGCATGAGCGATATCATTTTTTGAA CGGCTTCCAAGTTTTTTTCCGGGGAATAAACCCCGTGATGCTGGGGTCTC CCCCAACCAAGTTTCACCAATCAGCTGACTAACTCGAGCGACCTGTGCTC ATGAATACATCAGGCACGGGCAAGTCCACCACGATATGGCACGTCATCAA CTCGCGTGTGGCTCCAGATGCCCGTGTCCTGGTCACCTGCACACGAAACC AAGCCGTCGACGCCGTGACGCAAAAGGTGGCCAGCTTTGGCGTGCTGGTA AGTAAGGACACGCGTGCTGTTCTAAAGCGTCCTAAGGCCTCTTGTCGCTC CTGCTCTTTTGGTAATCGCTGAATGGCTGAAACAAGGTGCGGAGTACGAC GAAGCGTTCACGAGGTTCCGTAGCTTTAGCATCAACGTGATTCGACGAAT TTCCCCCAGCAGTGACCTTCGTACATCTCAGGCGCACCTTGCACTGCCAC TCAGTTCTCATCGGAAGGTGCCCAGACTTACAGCGGACCTCGAAGTGAAA TGTTTTGCAATCTAGGCGCACGCGGGTCTGGCGAAGTTGCGTCCTAGATA TTGCGTAGCAACACATACCTCGCGCGTGGAGAGTTTGTATTCGACCAATG CATATATACTCGCGCCTTAACAACGTCCGCGCAATCTGGTCCGTGTTTGT GCACCTGCGCTCGGGATGTAGGTATTCGGCAACGAGACGCGCGTGGGCGA TTTCGCCAAGAACCACACCATTACAGGTCGTATGTACAACGACCCTGAGC TCGTGCACTGGCGCGAGGTCGTTTCCAACTGGAGCAAGGCTTCACAACGC GCCGATGCGATCTCGTGGGAACGGCTTCACCTCCCTGCTTTCCCGTATTT CCAGTATCTGAATAAGAAGCAAGGCAGGGCTGCCGCAGGGTGGGTCCGGA TCCTCACGAGCGTACTTCGTGACTGCTACATGAAGAGGCTCGAGAACGGA AACCTTGAGCAGAAAAAGACGCTTCGGCAGATTCGCGTGCTGGAAAAGTA CAAGCAGTTCCTCTCTGCTGGGCACAAGCGTGCCAAAATGATTCTATCAC GGCTGGAGGCCCTCACACGCTACCGCATCTTCACCAAGACGCGGGTGCTC ATCTGCACCGTCGACAGCACGGAGCGCATGCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9536:861..3093+

>mRNA_S-dermatodea_contig9536.17557.1 ID=mRNA_S-dermatodea_contig9536.17557.1|Name=mRNA_S-dermatodea_contig9536.17557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at S-dermatodea_contig9536:861..3093+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAAGCCCACACGCAACAGGAGTTTGGAGCCTCCATTCAATCAGGCGC
CAGCACGGCTGATCGCCTCGACGGGAAGGGATGGCTAACCGTGACCGGTC
GGCCGAACCCCCGAAAGCCTGACGCTGGTTTTTCCTTCCTGGTCGACGGA
ACGTCCATGCAGAACCGCGACGAGAACGAAGATGGCCACAACTTCAAGGA
CGAGCCGTGGTCACGTCACGTGGTCCAGTTCGAAGGCAAGGATGTCCCAT
GCTTGGTGGTCATGTGCGCAGATGGTGACACCGACTTCCAAGCCTACCTC
GTGGTTGCTGCGGCTCAAGGAGTTGGGGACCGTGGAGTTCCTGCTCGTTC
AGAGTTCACGAGCACGCGCGTGCGCTCTCTTGGGTACGTTGGGTCTTTTC
TACGCGAGTATGGGAGCGCGGCGGAGCTCCTTCGCACCCGTGCCAGCAAC
AGCTTGCTCGGCACGGTCGCTGCCCCTGGCCAGGAGTGCGAAGAGTCCCG
ACCATCCGGGGGGACGTTTGTGCGACCGACGAGCGCGGGATGTTTAGATA
CGTCGCGGGTCCCTCTTAATCCAAGCCAAAGTCAAGCTGTCATGAACCTC
ACTGGTGGTCTGGACATTATCGTGGGACCCCCTGATGCAAGCCCACACGC
AACAGGAGTTTGGAGCCTCCATTCAATCAGGCGCCAGCACGGCTGATCGC
CTCGACGGGAAGGGATGGCTAACCGTGACCGGTCGGCCGAACCCCCGAAA
GCCTGACGCTGGTTTTTCCTTCCTGGTCGACGGAACGTCCATGCAGAACC
GCGACGAGAACGAAGATGGCCACAACTTCAAGGACGAGCCGTGGTCACGT
CACGTGGTCCAGTTCGAAGGCAAGGATGTCCCATGCTTGGTGGTCATGTG
CGCAGATGGTGACACCGACTTCCAAGCCTACCTCGTGGTTGCTGCGGCTC
AAGGAGTTGGGGACCGTGGAGTTCCTGCTCGTTCAGAGTTCACGAGCACG
CGCGTGCGCTCTCTTGGGTACGTTGGGTCTTTTCTACGCGAGTATGGGAG
CGCGGCGGAGCTCCTTCGCACCCGTGCCAGCAACAGCTTGCTCGGCACGG
TCGCTGCCCCTGGCCAGGAGTGCGAAGAGTCCCGACCATCCGGGGGGACG
TTTGTGCGACCGACGAGCGCGGGATGTTTAGATACGTCGCGGGTCCCTCT
TAATCCAAGCCAAAGTCAAGCTGTCATGAACCTCACTGGTGGTCTGGACA
TTATCGTGGGACCCCCTGGCACGGGCAAGTCCACCACGATATGGCACGTC
ATCAACTCGCGTGTGGCTCCAGATGCCCGTGTCCTGGTCACCTGCACACG
AAACCAAGCCGTCGACGCCGTGACGCAAAAGGTGGCCAGCTTTGGCGTGC
TGGCACGGGCAAGTCCACCACGATATGGCACGTCATCAACTCGCGTGTGG
CTCCAGATGCCCGTGTCCTGGTCACCTGCACACGAAACCAAGCCGTCGAC
GCCGTGACGCAAAAGGTGGCCAGCTTTGGCGTGCTGGTATTCGGCAACGA
GACGCGCGTGGGCGATTTCGCCAAGAACCACACCATTACAGGTCGTATGT
ACAACGACCCTGAGCTCGTGCACTGGCGCGAGGTCGTTTCCAACTGGAGC
AAGGCTTCACAACGCGCCGATGCGATCTCGTGGGAACGGCTTCACCTCCC
TGCTTTCCCGTATTTCCAGTATCTGAATAAGAAGCAAGGCAGGGCTGCCG
CAGGGTGGGTCCGGATCCTCACGAGCGTACTTCGTGACTGCTACATGAAG
AGGCTCGAGAACGGAAACCTTGAGCAGAAAAAGACGCTTCGGCAGATTCG
CGTGCTGGAAAAGTACAAGCAGTTCCTCTCTGCTGGGCACAAGCGTGCCA
AAATGATTCTATCACGGCTGGAGGCCCTCACACGCTACCGCATCTTCACC
AAGACGCGGGTGCTCATCTGCACCGTCGACAGCACGGAGCGCATGCTCGT
ATTCGGCAACGAGACGCGCGTGGGCGATTTCGCCAAGAACCACACCATTA
CAGGTCGTATGTACAACGACCCTGAGCTCGTGCACTGGCGCGAGGTCGTT
TCCAACTGGAGCAAGGCTTCACAACGCGCCGATGCGATCTCGTGGGAACG
GCTTCACCTCCCTGCTTTCCCGTATTTCCAGTATCTGAATAAGAAGCAAG
GCAGGGCTGCCGCAGGGTGGGTCCGGATCCTCACGAGCGTACTTCGTGAC
TGCTACATGAAGAGGCTCGAGAACGGAAACCTTGAGCAGAAAAAGACGCT
TCGGCAGATTCGCGTGCTGGAAAAGTACAAGCAGTTCCTCTCTGCTGGGC
ACAAGCGTGCCAAAATGATTCTATCACGGCTGGAGGCCCTCACACGCTAC
CGCATCTTCACCAAGACGCGGGTGCTCATCTGCACCGTCGACAGCACGGA
GCGCATGCTC
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